Wall clock time and date at job start Mon Mar 30 2020 06:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99734 * 2 1 4 4 H 1.48504 * 109.47387 * 240.00260 * 3 2 1 5 5 H 1.48501 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47104 * 119.99988 * 3 2 1 7 7 C 1.37875 * 120.00414 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99916 * 177.02602 * 7 2 1 9 9 C 1.50701 * 119.99971 * 357.03301 * 7 2 1 10 10 C 1.53001 * 115.54880 * 84.72395 * 9 7 2 11 11 S 1.81396 * 109.47029 * 54.73745 * 10 9 7 12 12 O 1.42097 * 109.47188 * 75.37253 * 11 10 9 13 13 C 1.76204 * 103.00028 * 184.43262 * 11 10 9 14 14 C 1.38131 * 120.03502 * 265.25121 * 13 11 10 15 15 C 1.38258 * 120.07157 * 180.02562 * 14 13 11 16 16 C 1.38301 * 120.15381 * 0.02562 * 15 14 13 17 17 C 1.38084 * 120.07378 * 359.97438 * 16 15 14 18 18 C 1.38886 * 120.03761 * 85.27125 * 13 11 10 19 19 N 1.39670 * 120.07608 * 359.95583 * 18 13 11 20 20 C 1.52995 * 117.49948 * 230.39961 * 9 7 2 21 21 C 1.52998 * 117.49530 * 299.05860 * 9 7 2 22 22 H 0.96993 * 120.00284 * 5.10717 * 1 2 3 23 23 H 1.08992 * 109.47396 * 294.73092 * 10 9 7 24 24 H 1.09004 * 109.46664 * 174.73058 * 10 9 7 25 25 H 1.08003 * 119.95966 * 359.97438 * 14 13 11 26 26 H 1.08002 * 119.92031 * 179.72116 * 15 14 13 27 27 H 1.07998 * 119.96335 * 179.97438 * 16 15 14 28 28 H 1.07997 * 120.03754 * 179.97438 * 17 16 15 29 29 H 0.96998 * 119.99850 * 10.99044 * 19 18 13 30 30 H 0.97002 * 119.99636 * 190.98628 * 19 18 13 31 31 H 1.09001 * 117.50227 * 215.00411 * 20 9 7 32 32 H 1.09008 * 117.49703 * 0.02562 * 20 9 7 33 33 H 1.08999 * 117.50120 * 359.97438 * 21 9 7 34 34 H 1.09005 * 117.50002 * 144.97443 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0835 -1.1945 -0.0491 9 6 1.2527 -2.4983 0.0664 10 6 0.7520 -3.0409 -1.2737 11 16 2.1434 -3.1744 -2.4298 12 8 2.9380 -4.3013 -2.0865 13 6 1.3664 -3.6789 -3.9286 14 6 1.2961 -5.0196 -4.2537 15 6 0.6871 -5.4163 -5.4298 16 6 0.1467 -4.4731 -6.2848 17 6 0.2135 -3.1312 -5.9659 18 6 0.8242 -2.7291 -4.7846 19 7 0.8930 -1.3727 -4.4587 20 6 1.6958 -3.5159 1.1195 21 6 0.3829 -2.7497 1.2998 22 1 -0.4850 0.8366 -0.0748 23 1 0.0031 -2.3631 -1.6831 24 1 0.3082 -4.0252 -1.1241 25 1 1.7182 -5.7587 -3.5887 26 1 0.6375 -6.4649 -5.6837 27 1 -0.3279 -4.7864 -7.2029 28 1 -0.2083 -2.3952 -6.6342 29 1 1.4528 -1.0784 -3.7232 30 1 0.3811 -0.7250 -4.9680 31 1 1.6307 -4.5720 0.8577 32 1 2.5309 -3.2417 1.7642 33 1 0.3549 -1.9720 2.0629 34 1 -0.5462 -3.3014 1.1565 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083855098.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:04 Heat of formation + Delta-G solvation = -13.497832 kcal Electronic energy + Delta-G solvation = -17905.929023 eV Core-core repulsion = 15122.871288 eV Total energy + Delta-G solvation = -2783.057735 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.09431 -38.42172 -36.73837 -35.31310 -33.94861 -31.88043 -29.49511 -29.37598 -27.31570 -23.90927 -23.03932 -22.98227 -21.16494 -19.01920 -18.13554 -17.92009 -17.55787 -16.89899 -16.52324 -15.92574 -15.41725 -15.32264 -15.03020 -14.75314 -14.66411 -14.09177 -13.95192 -13.49683 -13.15785 -12.84305 -12.69054 -12.60083 -12.29767 -12.21303 -12.02953 -11.64783 -11.54024 -11.12907 -10.80400 -10.40686 -10.11189 -9.97342 -9.06551 -8.48228 -8.00788 -6.20057 0.11810 0.67068 1.14242 1.57651 1.61943 1.67261 2.11088 2.53194 2.80065 2.97219 3.18418 3.28197 3.46675 3.98102 4.14565 4.20776 4.39768 4.49950 4.58004 4.63127 4.73223 4.86318 4.89757 5.00169 5.03636 5.19041 5.25013 5.44633 5.52896 5.55843 5.62342 5.85211 5.98158 6.41091 6.56533 6.88561 7.01682 7.52008 9.06553 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021836 B = 0.007364 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.991338 B = 3801.494119 C = 4486.806268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.047 3.953 3 Si 0.941 3.059 4 H -0.245 1.245 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.067 0.933 9 C 0.046 3.954 10 C -0.378 4.378 11 S 1.367 4.633 12 O -0.923 6.923 13 C -0.562 4.562 14 C -0.040 4.040 15 C -0.206 4.206 16 C -0.040 4.040 17 C -0.212 4.212 18 C 0.288 3.712 19 N -0.860 5.860 20 C -0.212 4.212 21 C -0.152 4.152 22 H 0.265 0.735 23 H 0.111 0.889 24 H 0.039 0.961 25 H 0.096 0.904 26 H 0.135 0.865 27 H 0.160 0.840 28 H 0.158 0.842 29 H 0.405 0.595 30 H 0.417 0.583 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.061 0.221 -13.209 13.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.156 4.156 3 Si 0.766 3.234 4 H -0.169 1.169 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.085 0.915 9 C 0.045 3.955 10 C -0.516 4.516 11 S 1.570 4.430 12 O -0.919 6.919 13 C -0.665 4.665 14 C -0.060 4.060 15 C -0.227 4.227 16 C -0.058 4.058 17 C -0.235 4.235 18 C 0.178 3.822 19 N -0.400 5.400 20 C -0.250 4.250 21 C -0.191 4.191 22 H 0.074 0.926 23 H 0.129 0.871 24 H 0.058 0.942 25 H 0.114 0.886 26 H 0.153 0.847 27 H 0.177 0.823 28 H 0.176 0.824 29 H 0.236 0.764 30 H 0.249 0.751 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.248 0.492 -12.998 13.010 hybrid contribution -1.012 -1.176 0.972 1.831 sum -1.260 -0.684 -12.026 12.111 Atomic orbital electron populations 1.70100 1.07163 1.27896 1.47928 1.25557 0.95324 1.01372 0.93326 0.85875 0.78744 0.79031 0.79772 1.16880 1.21266 1.21022 1.20648 0.92858 0.88942 1.54035 0.91506 1.18526 0.98235 0.93696 0.85074 1.27110 1.13680 1.01958 1.08836 1.68822 0.83666 1.08363 0.82196 1.92850 1.59738 1.56075 1.83198 1.27241 1.22432 0.98964 1.17886 1.20865 0.94040 0.94277 0.96837 1.21201 1.04614 1.00866 0.96004 1.21432 0.93762 0.92132 0.98514 1.21118 1.07642 0.97664 0.97070 1.17367 0.89355 0.84298 0.91208 1.42762 1.53551 1.03777 1.39869 1.23085 0.98952 0.95835 1.07085 1.22453 0.92030 1.01105 1.03499 0.92606 0.87057 0.94158 0.88577 0.84747 0.82283 0.82441 0.76418 0.75132 0.91826 0.89836 0.91082 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.10 12.84 21.45 0.28 -44.82 16 2 C 0.05 2.26 5.41 84.65 0.46 2.72 16 3 Si 0.94 37.09 29.54 68.60 2.03 39.12 16 4 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 5 H -0.29 -11.28 7.11 99.48 0.71 -10.58 16 6 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.53 -25.91 8.11 25.60 0.21 -25.70 16 8 H 0.07 3.22 7.81 -2.91 -0.02 3.20 16 9 C 0.05 2.26 1.48 -52.93 -0.08 2.19 16 10 C -0.38 -17.01 5.82 71.98 0.42 -16.59 16 11 S 1.37 55.01 11.45 -56.49 -0.65 54.37 16 12 O -0.92 -46.25 16.79 -148.98 -2.50 -48.75 16 13 C -0.56 -19.95 5.65 22.40 0.13 -19.82 16 14 C -0.04 -1.45 9.45 22.25 0.21 -1.24 16 15 C -0.21 -5.73 10.04 22.29 0.22 -5.51 16 16 C -0.04 -0.88 10.04 22.25 0.22 -0.66 16 17 C -0.21 -4.83 9.91 22.40 0.22 -4.61 16 18 C 0.29 8.14 6.74 38.21 0.26 8.40 16 19 N -0.86 -20.07 8.97 -51.37 -0.46 -20.53 16 20 C -0.21 -10.15 9.93 30.62 0.30 -9.85 16 21 C -0.15 -7.41 9.39 30.62 0.29 -7.13 16 22 H 0.26 12.69 8.32 -92.71 -0.77 11.92 16 23 H 0.11 4.98 8.14 -2.39 -0.02 4.96 16 24 H 0.04 1.86 8.09 -2.39 -0.02 1.84 16 25 H 0.10 3.85 7.35 -2.91 -0.02 3.83 16 26 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 27 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 28 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 29 H 0.41 10.03 7.43 -92.71 -0.69 9.34 16 30 H 0.42 6.92 8.86 -92.71 -0.82 6.10 16 31 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.08 3.88 8.14 -2.38 -0.02 3.86 16 33 H 0.07 3.61 8.14 -2.39 -0.02 3.59 16 34 H 0.06 3.01 8.14 -2.38 -0.02 2.99 16 Total: -1.00 -66.71 305.60 1.16 -65.55 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: -0.39 Total: 32.86 kcal Atomic # 6 Polarization: -80.66 SS G_CDS: 2.86 Total: -77.80 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -0.19 Total: -65.35 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -2.50 Total: -48.75 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Atomic # 16 Polarization: 55.01 SS G_CDS: -0.65 Total: 54.37 kcal Total: -66.71 1.16 -65.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855098.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.051 kcal (2) G-P(sol) polarization free energy of solvation -66.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds