Wall clock time and date at job start Mon Mar 30 2020 06:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00429 * 2 1 4 4 H 1.48505 * 109.46807 * 239.99817 * 3 2 1 5 5 H 1.48498 * 109.47203 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47208 * 119.99999 * 3 2 1 7 7 C 1.37880 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00054 * 173.48028 * 7 2 1 9 9 C 1.50694 * 119.99965 * 353.47645 * 7 2 1 10 10 C 1.53005 * 115.55133 * 85.11891 * 9 7 2 11 11 S 1.81395 * 109.46981 * 39.86865 * 10 9 7 12 12 O 1.42101 * 109.47285 * 283.70085 * 11 10 9 13 13 C 1.76201 * 102.99947 * 174.64087 * 11 10 9 14 14 C 1.38286 * 119.92221 * 90.00473 * 13 11 10 15 15 C 1.38101 * 120.07469 * 180.02562 * 14 13 11 16 16 C 1.38917 * 119.92614 * 359.97438 * 15 14 13 17 17 N 1.39672 * 120.07701 * 179.97438 * 16 15 14 18 18 C 1.38912 * 119.84693 * 0.26141 * 16 15 14 19 19 C 1.38104 * 119.92338 * 359.49117 * 18 16 15 20 20 C 1.53003 * 117.52126 * 230.82242 * 9 7 2 21 21 C 1.53004 * 60.00175 * 107.48042 * 20 9 7 22 22 H 0.97005 * 119.98997 * 5.04661 * 1 2 3 23 23 H 1.08997 * 109.46881 * 279.86880 * 10 9 7 24 24 H 1.09003 * 109.47404 * 159.87279 * 10 9 7 25 25 H 1.07998 * 119.96530 * 0.03885 * 14 13 11 26 26 H 1.08002 * 120.04123 * 179.97438 * 15 14 13 27 27 H 0.97003 * 119.99817 * 0.02562 * 17 16 15 28 28 H 0.96999 * 120.00135 * 179.72997 * 17 16 15 29 29 H 1.08000 * 120.03403 * 179.71802 * 18 16 15 30 30 H 1.08004 * 119.95738 * 180.25637 * 19 18 16 31 31 H 1.08997 * 117.50009 * 214.97457 * 20 9 7 32 32 H 1.08998 * 117.49720 * 359.97438 * 20 9 7 33 33 H 1.09000 * 117.49494 * 252.51319 * 21 20 9 34 34 H 1.08997 * 117.51142 * 107.48182 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0792 -1.1973 -0.1057 9 6 1.2582 -2.4948 0.1494 10 6 0.6947 -3.0843 -1.1452 11 16 1.8951 -2.8565 -2.4860 12 8 1.8670 -1.5044 -2.9224 13 6 1.1562 -3.7226 -3.8309 14 6 0.3023 -3.0591 -4.6928 15 6 -0.2790 -3.7349 -5.7475 16 6 -0.0045 -5.0827 -5.9426 17 7 -0.5910 -5.7695 -7.0080 18 6 0.8499 -5.7473 -5.0720 19 6 1.4318 -5.0641 -4.0222 20 6 1.7515 -3.4749 1.2157 21 6 0.4486 -2.7022 1.4310 22 1 -0.4849 0.8369 -0.0739 23 1 -0.2357 -2.5771 -1.4005 24 1 0.5023 -4.1482 -1.0066 25 1 0.0898 -2.0111 -4.5410 26 1 -0.9461 -3.2163 -6.4201 27 1 -1.1905 -5.3052 -7.6130 28 1 -0.3956 -6.7096 -7.1454 29 1 1.0618 -6.7962 -5.2181 30 1 2.0994 -5.5792 -3.3474 31 1 1.6747 -4.5395 0.9949 32 1 2.6163 -3.1791 1.8096 33 1 0.4562 -1.8979 2.1667 34 1 -0.4855 -3.2582 1.3518 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083855099.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:06 Heat of formation + Delta-G solvation = 11.034356 kcal Electronic energy + Delta-G solvation = -17581.388612 eV Core-core repulsion = 14799.394673 eV Total energy + Delta-G solvation = -2781.993939 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.97160 -36.44069 -34.54537 -34.28443 -31.82983 -30.63981 -28.50775 -27.45939 -25.20157 -22.60049 -21.95348 -21.04410 -19.16793 -17.48722 -16.85214 -16.73482 -16.00089 -15.12132 -14.55488 -14.07198 -13.97743 -13.93166 -13.27730 -13.18936 -12.93208 -12.80016 -12.44236 -11.96671 -11.48355 -10.93092 -10.83815 -10.77864 -10.63381 -10.52477 -10.40803 -10.09667 -9.61020 -9.17417 -8.72425 -8.70883 -8.32394 -8.06974 -7.66152 -7.06052 -5.94543 -4.04383 1.55309 1.68961 2.90960 3.42756 3.45816 3.52367 3.78139 3.86521 4.21546 4.54362 4.99634 5.12804 5.16754 5.37786 5.39526 5.64803 5.77077 5.96245 6.15614 6.28163 6.32482 6.39667 6.45780 6.59074 6.64190 6.80631 6.82861 6.98836 7.05884 7.18525 7.48586 7.51639 7.57673 7.66068 7.96546 8.42770 8.97637 9.67804 11.13772 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.027166 B = 0.005932 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.434385 B = 4719.020472 C = 5239.018391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.093 3.907 3 Si 0.887 3.113 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.064 0.936 9 C 0.063 3.937 10 C -0.390 4.390 11 S 1.337 4.663 12 O -0.835 6.835 13 C -0.517 4.517 14 C -0.007 4.007 15 C -0.216 4.216 16 C 0.230 3.770 17 N -0.881 5.881 18 C -0.219 4.219 19 C -0.003 4.003 20 C -0.209 4.209 21 C -0.156 4.156 22 H 0.260 0.740 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.125 0.875 26 H 0.114 0.886 27 H 0.396 0.604 28 H 0.396 0.604 29 H 0.119 0.881 30 H 0.132 0.868 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.645 -13.577 -9.141 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.113 4.113 3 Si 0.714 3.286 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.082 0.918 9 C 0.062 3.938 10 C -0.528 4.528 11 S 1.533 4.467 12 O -0.830 6.830 13 C -0.611 4.611 14 C -0.026 4.026 15 C -0.240 4.240 16 C 0.126 3.874 17 N -0.420 5.420 18 C -0.243 4.243 19 C -0.023 4.023 20 C -0.246 4.246 21 C -0.195 4.195 22 H 0.069 0.931 23 H 0.101 0.899 24 H 0.095 0.905 25 H 0.143 0.857 26 H 0.132 0.868 27 H 0.224 0.776 28 H 0.224 0.776 29 H 0.137 0.863 30 H 0.150 0.850 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.324 -12.942 -9.105 15.993 hybrid contribution -2.240 1.450 -0.988 2.846 sum 0.084 -11.491 -10.092 15.294 Atomic orbital electron populations 1.69970 1.06198 1.26858 1.47787 1.24852 0.94580 0.98987 0.92856 0.86724 0.79974 0.83151 0.78707 1.19577 1.21503 1.20221 1.20372 0.93050 0.88867 1.53342 0.91776 1.18249 0.97737 0.93325 0.84508 1.27221 1.12342 1.02593 1.10675 1.69090 1.03152 0.91486 0.82959 1.93073 1.80833 1.31932 1.77174 1.28526 1.11500 1.03930 1.17184 1.20969 0.90898 0.99354 0.91408 1.20655 1.07288 0.93281 1.02743 1.17884 0.90904 0.91369 0.87285 1.42513 1.54290 1.13324 1.31824 1.20632 1.04355 0.99831 0.99434 1.20593 0.94863 0.92208 0.94650 1.23106 0.98526 0.95586 1.07421 1.22499 0.92193 1.01149 1.03654 0.93073 0.89885 0.90526 0.85685 0.86760 0.77645 0.77626 0.86345 0.85035 0.91334 0.90196 0.90229 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.11 12.93 55.43 0.72 -25.39 16 2 C 0.09 2.67 5.39 -17.82 -0.10 2.57 16 3 Si 0.89 22.69 29.55 -169.99 -5.02 17.66 16 4 H -0.27 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.13 6.93 -34.44 -0.24 -14.37 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.06 1.53 1.65 -155.66 -0.26 1.27 16 10 C -0.39 -8.51 6.00 37.16 0.22 -8.29 16 11 S 1.34 26.10 12.70 -107.50 -1.36 24.74 16 12 O -0.83 -21.73 16.08 -35.23 -0.57 -22.29 16 13 C -0.52 -8.95 5.61 -39.55 -0.22 -9.17 16 14 C -0.01 -0.12 9.43 -39.61 -0.37 -0.50 16 15 C -0.22 -3.33 9.90 -39.38 -0.39 -3.72 16 16 C 0.23 3.03 6.75 -83.79 -0.57 2.47 16 17 N -0.88 -8.05 9.09 32.41 0.29 -7.76 16 18 C -0.22 -2.78 9.90 -39.38 -0.39 -3.17 16 19 C 0.00 -0.05 9.74 -39.62 -0.39 -0.43 16 20 C -0.21 -4.27 9.88 -26.73 -0.26 -4.54 16 21 C -0.16 -3.67 9.46 -26.73 -0.25 -3.92 16 22 H 0.26 7.54 8.32 -40.82 -0.34 7.20 16 23 H 0.08 2.11 8.14 -51.93 -0.42 1.69 16 24 H 0.08 1.40 7.95 -51.92 -0.41 0.99 16 25 H 0.13 2.58 7.45 -52.49 -0.39 2.19 16 26 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.40 2.99 8.84 -40.82 -0.36 2.63 16 28 H 0.40 2.70 8.84 -40.82 -0.36 2.34 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 31 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 32 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.08 2.01 8.14 -51.93 -0.42 1.58 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 306.34 15.07 4.62 4.62 Total: -1.00 -35.70 306.34 -8.99 -44.69 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -4.45 Total: 5.51 kcal Atomic # 6 Polarization: -38.57 SS G_CDS: -3.21 Total: -41.78 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 1.01 Total: -33.15 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.57 Total: -22.29 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Atomic # 16 Polarization: 26.10 SS G_CDS: -1.36 Total: 24.74 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.70 -8.99 -44.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855099.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.726 kcal (2) G-P(sol) polarization free energy of solvation -35.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds