Wall clock time and date at job start Mon Mar 30 2020 06:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00429 * 2 1 4 4 H 1.48505 * 109.46807 * 239.99817 * 3 2 1 5 5 H 1.48498 * 109.47203 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47208 * 119.99999 * 3 2 1 7 7 C 1.37880 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00054 * 173.48028 * 7 2 1 9 9 C 1.50694 * 119.99965 * 353.47645 * 7 2 1 10 10 C 1.53005 * 115.55133 * 85.11891 * 9 7 2 11 11 S 1.81395 * 109.46981 * 39.86865 * 10 9 7 12 12 O 1.42101 * 109.47285 * 283.70085 * 11 10 9 13 13 C 1.76201 * 102.99947 * 174.64087 * 11 10 9 14 14 C 1.38286 * 119.92221 * 90.00473 * 13 11 10 15 15 C 1.38101 * 120.07469 * 180.02562 * 14 13 11 16 16 C 1.38917 * 119.92614 * 359.97438 * 15 14 13 17 17 N 1.39672 * 120.07701 * 179.97438 * 16 15 14 18 18 C 1.38912 * 119.84693 * 0.26141 * 16 15 14 19 19 C 1.38104 * 119.92338 * 359.49117 * 18 16 15 20 20 C 1.53003 * 117.52126 * 230.82242 * 9 7 2 21 21 C 1.53004 * 60.00175 * 107.48042 * 20 9 7 22 22 H 0.97005 * 119.98997 * 5.04661 * 1 2 3 23 23 H 1.08997 * 109.46881 * 279.86880 * 10 9 7 24 24 H 1.09003 * 109.47404 * 159.87279 * 10 9 7 25 25 H 1.07998 * 119.96530 * 0.03885 * 14 13 11 26 26 H 1.08002 * 120.04123 * 179.97438 * 15 14 13 27 27 H 0.97003 * 119.99817 * 0.02562 * 17 16 15 28 28 H 0.96999 * 120.00135 * 179.72997 * 17 16 15 29 29 H 1.08000 * 120.03403 * 179.71802 * 18 16 15 30 30 H 1.08004 * 119.95738 * 180.25637 * 19 18 16 31 31 H 1.08997 * 117.50009 * 214.97457 * 20 9 7 32 32 H 1.08998 * 117.49720 * 359.97438 * 20 9 7 33 33 H 1.09000 * 117.49494 * 252.51319 * 21 20 9 34 34 H 1.08997 * 117.51142 * 107.48182 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0792 -1.1973 -0.1057 9 6 1.2582 -2.4948 0.1494 10 6 0.6947 -3.0843 -1.1452 11 16 1.8951 -2.8565 -2.4860 12 8 1.8670 -1.5044 -2.9224 13 6 1.1562 -3.7226 -3.8309 14 6 0.3023 -3.0591 -4.6928 15 6 -0.2790 -3.7349 -5.7475 16 6 -0.0045 -5.0827 -5.9426 17 7 -0.5910 -5.7695 -7.0080 18 6 0.8499 -5.7473 -5.0720 19 6 1.4318 -5.0641 -4.0222 20 6 1.7515 -3.4749 1.2157 21 6 0.4486 -2.7022 1.4310 22 1 -0.4849 0.8369 -0.0739 23 1 -0.2357 -2.5771 -1.4005 24 1 0.5023 -4.1482 -1.0066 25 1 0.0898 -2.0111 -4.5410 26 1 -0.9461 -3.2163 -6.4201 27 1 -1.1905 -5.3052 -7.6130 28 1 -0.3956 -6.7096 -7.1454 29 1 1.0618 -6.7962 -5.2181 30 1 2.0994 -5.5792 -3.3474 31 1 1.6747 -4.5395 0.9949 32 1 2.6163 -3.1791 1.8096 33 1 0.4562 -1.8979 2.1667 34 1 -0.4855 -3.2582 1.3518 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083855099.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:06 Heat of formation + Delta-G solvation = -14.946433 kcal Electronic energy + Delta-G solvation = -17582.515223 eV Core-core repulsion = 14799.394673 eV Total energy + Delta-G solvation = -2783.120551 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.07522 -38.26794 -36.27688 -35.37952 -33.95709 -31.78266 -29.64964 -29.15654 -27.29706 -23.73762 -23.11329 -22.78761 -21.07016 -18.84945 -18.15102 -17.74305 -17.69451 -16.66457 -16.61618 -15.80198 -15.22824 -15.12729 -14.85268 -14.65190 -14.39459 -14.14506 -14.02003 -13.60021 -13.24176 -12.92986 -12.83511 -12.46138 -12.35024 -11.93655 -11.85581 -11.69780 -11.43847 -11.00273 -10.68483 -10.29555 -9.87921 -9.84508 -8.99647 -8.45498 -8.11749 -6.22289 0.32205 0.54553 1.32933 1.39138 1.42949 1.44301 2.41431 2.43674 2.94019 2.97502 3.21984 3.47344 3.60118 3.96686 4.12302 4.42320 4.54099 4.58102 4.71663 4.82313 4.88611 4.90979 5.13231 5.14082 5.18587 5.30022 5.36125 5.38782 5.61249 5.69627 5.76085 5.85382 5.97842 6.37571 6.53413 6.87487 6.97843 7.50997 8.95925 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.027166 B = 0.005932 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.434385 B = 4719.020472 C = 5239.018391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.037 3.963 3 Si 0.929 3.071 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.255 1.255 7 C -0.514 4.514 8 H 0.065 0.935 9 C 0.025 3.975 10 C -0.388 4.388 11 S 1.390 4.610 12 O -0.913 6.913 13 C -0.539 4.539 14 C -0.040 4.040 15 C -0.232 4.232 16 C 0.241 3.759 17 N -0.860 5.860 18 C -0.215 4.215 19 C 0.007 3.993 20 C -0.163 4.163 21 C -0.175 4.175 22 H 0.252 0.748 23 H 0.033 0.967 24 H 0.117 0.883 25 H 0.080 0.920 26 H 0.123 0.877 27 H 0.405 0.595 28 H 0.413 0.587 29 H 0.162 0.838 30 H 0.178 0.822 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.837 -17.871 -9.978 20.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.163 4.163 3 Si 0.756 3.244 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.179 1.179 7 C -0.552 4.552 8 H 0.083 0.917 9 C 0.024 3.976 10 C -0.525 4.525 11 S 1.590 4.410 12 O -0.909 6.909 13 C -0.637 4.637 14 C -0.060 4.060 15 C -0.255 4.255 16 C 0.133 3.867 17 N -0.400 5.400 18 C -0.238 4.238 19 C -0.013 4.013 20 C -0.200 4.200 21 C -0.214 4.214 22 H 0.061 0.939 23 H 0.052 0.948 24 H 0.136 0.864 25 H 0.098 0.902 26 H 0.141 0.859 27 H 0.235 0.765 28 H 0.244 0.756 29 H 0.180 0.820 30 H 0.196 0.804 31 H 0.133 0.867 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.531 -17.239 -9.919 20.199 hybrid contribution -2.659 2.571 -0.922 3.812 sum 0.871 -14.668 -10.840 18.260 Atomic orbital electron populations 1.70095 1.07362 1.26681 1.50544 1.25554 0.95210 1.01933 0.93637 0.86055 0.79041 0.80492 0.78853 1.20780 1.21754 1.17918 1.20784 0.93321 0.90381 1.50704 0.91707 1.18391 0.99290 0.93958 0.86009 1.27179 1.10325 1.04208 1.10746 1.67847 1.01785 0.88922 0.82447 1.92949 1.82622 1.36222 1.79123 1.27962 1.13520 1.05744 1.16508 1.20796 0.93349 0.97857 0.93974 1.20708 1.07748 0.94770 1.02319 1.18016 0.90267 0.90469 0.87958 1.42501 1.53078 1.14075 1.30300 1.21125 1.02863 1.01700 0.98125 1.21109 0.94485 0.90272 0.95446 1.23183 0.96366 0.97127 1.03322 1.22419 0.94347 1.01736 1.02867 0.93919 0.94836 0.86442 0.90183 0.85912 0.76546 0.75641 0.82010 0.80449 0.86702 0.89484 0.93156 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.32 12.93 21.45 0.28 -57.04 16 2 C 0.04 2.24 5.39 84.66 0.46 2.69 16 3 Si 0.93 48.10 29.55 68.60 2.03 50.13 16 4 H -0.28 -14.97 7.11 99.48 0.71 -14.27 16 5 H -0.29 -15.03 7.11 99.48 0.71 -14.33 16 6 H -0.25 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.51 -28.54 6.93 25.60 0.18 -28.36 16 8 H 0.06 3.49 7.82 -2.91 -0.02 3.46 16 9 C 0.02 1.20 1.65 -52.92 -0.09 1.11 16 10 C -0.39 -16.92 6.00 71.98 0.43 -16.49 16 11 S 1.39 54.86 12.70 -56.49 -0.72 54.14 16 12 O -0.91 -50.41 16.08 -148.98 -2.40 -52.80 16 13 C -0.54 -18.33 5.61 22.29 0.13 -18.21 16 14 C -0.04 -1.53 9.43 22.25 0.21 -1.32 16 15 C -0.23 -7.01 9.90 22.40 0.22 -6.78 16 16 C 0.24 5.50 6.75 38.22 0.26 5.76 16 17 N -0.86 -11.98 9.09 -51.37 -0.47 -12.45 16 18 C -0.21 -4.34 9.90 22.40 0.22 -4.11 16 19 C 0.01 0.15 9.74 22.25 0.22 0.37 16 20 C -0.16 -6.16 9.88 30.60 0.30 -5.86 16 21 C -0.17 -8.18 9.46 30.60 0.29 -7.89 16 22 H 0.25 15.56 8.32 -92.70 -0.77 14.79 16 23 H 0.03 1.76 8.14 -2.39 -0.02 1.75 16 24 H 0.12 3.99 7.95 -2.39 -0.02 3.97 16 25 H 0.08 3.70 7.45 -2.91 -0.02 3.68 16 26 H 0.12 3.32 8.06 -2.91 -0.02 3.30 16 27 H 0.41 4.62 8.84 -92.71 -0.82 3.80 16 28 H 0.41 3.41 8.84 -92.71 -0.82 2.59 16 29 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.11 3.31 8.08 -2.39 -0.02 3.29 16 32 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 33 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -84.55 306.34 1.03 -83.53 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -0.52 Total: 13.59 kcal Atomic # 6 Polarization: -81.92 SS G_CDS: 2.82 Total: -79.10 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -0.19 Total: -69.49 kcal Atomic # 8 Polarization: -50.41 SS G_CDS: -2.40 Total: -52.80 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Atomic # 16 Polarization: 54.86 SS G_CDS: -0.72 Total: 54.14 kcal Total: -84.55 1.03 -83.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855099.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.581 kcal (2) G-P(sol) polarization free energy of solvation -84.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds