Wall clock time and date at job start Mon Mar 30 2020 06:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00048 * 2 1 4 4 H 1.48505 * 109.46807 * 239.99573 * 3 2 1 5 5 H 1.48498 * 109.47203 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47208 * 119.99755 * 3 2 1 7 7 C 1.37880 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00191 * 173.43955 * 7 2 1 9 9 C 1.50705 * 119.99964 * 353.43967 * 7 2 1 10 10 C 1.53001 * 115.54863 * 85.38973 * 9 7 2 11 11 S 1.81397 * 109.47206 * 39.76340 * 10 9 7 12 12 O 1.42099 * 109.47107 * 76.18277 * 11 10 9 13 13 C 1.76201 * 102.99928 * 185.24050 * 11 10 9 14 14 C 1.38289 * 119.92195 * 90.00026 * 13 11 10 15 15 C 1.38101 * 120.07007 * 180.02562 * 14 13 11 16 16 C 1.38909 * 119.92813 * 359.97438 * 15 14 13 17 17 N 1.39680 * 120.07739 * 179.97438 * 16 15 14 18 18 C 1.38916 * 119.85154 * 0.26115 * 16 15 14 19 19 C 1.38107 * 119.91895 * 359.48523 * 18 16 15 20 20 C 1.52999 * 117.51455 * 231.09219 * 9 7 2 21 21 C 1.52999 * 60.00090 * 107.48187 * 20 9 7 22 22 H 0.96998 * 119.99622 * 5.05306 * 1 2 3 23 23 H 1.09000 * 109.46723 * 279.76467 * 10 9 7 24 24 H 1.08999 * 109.46824 * 159.76435 * 10 9 7 25 25 H 1.07991 * 119.96524 * 359.97438 * 14 13 11 26 26 H 1.08005 * 120.03790 * 179.97438 * 15 14 13 27 27 H 0.96998 * 119.99428 * 0.02562 * 17 16 15 28 28 H 0.96998 * 119.99955 * 179.72397 * 17 16 15 29 29 H 1.08000 * 120.03614 * 179.72620 * 18 16 15 30 30 H 1.07996 * 119.95583 * 180.25330 * 19 18 16 31 31 H 1.09002 * 117.49260 * 214.97095 * 20 9 7 32 32 H 1.08994 * 117.50409 * 359.97438 * 20 9 7 33 33 H 1.09002 * 117.49452 * 252.51139 * 21 20 9 34 34 H 1.08996 * 117.52235 * 107.47679 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0793 -1.1972 -0.1063 9 6 1.2584 -2.4949 0.1502 10 6 0.6998 -3.0880 -1.1448 11 16 1.9035 -2.8603 -2.4827 12 8 2.9578 -3.8017 -2.3365 13 6 1.0381 -3.4512 -3.8992 14 6 0.2710 -2.5808 -4.6517 15 6 -0.4090 -3.0407 -5.7622 16 6 -0.3213 -4.3792 -6.1234 17 7 -1.0082 -4.8478 -7.2457 18 6 0.4462 -5.2518 -5.3625 19 6 1.1279 -4.7842 -4.2561 20 6 1.7486 -3.4717 1.2209 21 6 0.4445 -2.6993 1.4296 22 1 -0.4849 0.8368 -0.0740 23 1 -0.2309 -2.5832 -1.4037 24 1 0.5093 -4.1520 -1.0045 25 1 0.2029 -1.5404 -4.3701 26 1 -1.0083 -2.3605 -6.3493 27 1 -1.5469 -4.2383 -7.7741 28 1 -0.9430 -5.7818 -7.4992 29 1 0.5129 -6.2940 -5.6380 30 1 1.7280 -5.4612 -3.6665 31 1 1.6731 -4.5370 1.0026 32 1 2.6111 -3.1739 1.8170 33 1 0.4491 -1.8930 2.1631 34 1 -0.4891 -3.2559 1.3486 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083855100.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:07 Heat of formation + Delta-G solvation = 6.055313 kcal Electronic energy + Delta-G solvation = -17517.609464 eV Core-core repulsion = 14735.399617 eV Total energy + Delta-G solvation = -2782.209847 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.97164 -36.48879 -34.74896 -34.34698 -32.01407 -30.63941 -28.51673 -27.53108 -25.36226 -22.59717 -21.96325 -21.04209 -19.26977 -17.52082 -16.86243 -16.76182 -16.04708 -15.33238 -14.66008 -14.09895 -14.05867 -13.95230 -13.42264 -13.17436 -13.04040 -12.94051 -12.12633 -12.09622 -11.60760 -11.17626 -10.94122 -10.86055 -10.72086 -10.59816 -10.48183 -10.10405 -9.77679 -9.30897 -8.83000 -8.70335 -8.48977 -8.04164 -7.68244 -7.08659 -6.10588 -4.22196 1.54467 1.69335 2.82825 3.30097 3.35389 3.39463 3.75664 3.84197 4.15624 4.35343 4.86497 5.09737 5.17639 5.19013 5.39058 5.67630 5.76096 5.96030 6.08284 6.27783 6.30691 6.40021 6.45091 6.58567 6.63430 6.81565 6.83270 6.93497 7.05348 7.14226 7.42155 7.48919 7.52879 7.66854 7.80640 8.36187 8.84430 9.46844 10.96591 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.023514 B = 0.006068 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.476436 B = 4613.605669 C = 5114.728730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.084 3.916 3 Si 0.885 3.115 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.067 0.933 9 C 0.062 3.938 10 C -0.383 4.383 11 S 1.353 4.647 12 O -0.880 6.880 13 C -0.514 4.514 14 C 0.004 3.996 15 C -0.216 4.216 16 C 0.231 3.769 17 N -0.880 5.880 18 C -0.217 4.217 19 C -0.013 4.013 20 C -0.213 4.213 21 C -0.151 4.151 22 H 0.264 0.736 23 H 0.111 0.889 24 H 0.052 0.948 25 H 0.137 0.863 26 H 0.121 0.879 27 H 0.397 0.603 28 H 0.395 0.605 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.484 -3.277 -11.675 12.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.122 4.122 3 Si 0.711 3.289 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.060 3.940 10 C -0.522 4.522 11 S 1.553 4.447 12 O -0.875 6.875 13 C -0.610 4.610 14 C -0.015 4.015 15 C -0.240 4.240 16 C 0.127 3.873 17 N -0.419 5.419 18 C -0.241 4.241 19 C -0.032 4.032 20 C -0.250 4.250 21 C -0.190 4.190 22 H 0.074 0.926 23 H 0.130 0.870 24 H 0.071 0.929 25 H 0.155 0.845 26 H 0.138 0.862 27 H 0.225 0.775 28 H 0.223 0.777 29 H 0.132 0.868 30 H 0.139 0.861 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.717 -2.817 -11.596 12.239 hybrid contribution -0.775 -1.575 -0.104 1.758 sum -3.492 -4.391 -11.700 12.976 Atomic orbital electron populations 1.69989 1.05983 1.27245 1.47075 1.24969 0.94730 0.98812 0.93698 0.86767 0.79932 0.82840 0.79346 1.19333 1.21106 1.20069 1.20513 0.93350 0.88680 1.53145 0.91484 1.18279 0.97767 0.93486 0.84428 1.27138 1.12135 1.02186 1.10697 1.70380 0.80171 1.11843 0.82288 1.92886 1.44557 1.65404 1.84688 1.28326 1.14259 0.99589 1.18802 1.20679 0.90437 0.99133 0.91288 1.20673 1.07551 0.93821 1.01941 1.17887 0.89976 0.92968 0.86499 1.42513 1.55977 1.13070 1.30340 1.20610 1.04911 0.98873 0.99722 1.20897 0.93344 0.94911 0.94076 1.23071 0.98617 0.95677 1.07619 1.22521 0.92050 1.01032 1.03414 0.92572 0.87043 0.92929 0.84532 0.86151 0.77547 0.77682 0.86765 0.86060 0.91987 0.90248 0.89929 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.13 12.92 55.43 0.72 -21.42 16 2 C 0.08 2.07 5.39 -17.82 -0.10 1.97 16 3 Si 0.88 19.07 29.55 -169.99 -5.02 14.05 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 5 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.52 -13.07 7.54 -34.44 -0.26 -13.32 16 8 H 0.07 1.70 7.82 -52.48 -0.41 1.29 16 9 C 0.06 1.51 1.65 -155.66 -0.26 1.26 16 10 C -0.38 -8.50 6.00 37.16 0.22 -8.28 16 11 S 1.35 27.62 12.39 -107.50 -1.33 26.29 16 12 O -0.88 -21.78 16.89 -35.23 -0.60 -22.37 16 13 C -0.51 -9.24 5.61 -39.55 -0.22 -9.46 16 14 C 0.00 0.07 9.74 -39.61 -0.39 -0.32 16 15 C -0.22 -2.94 9.90 -39.38 -0.39 -3.33 16 16 C 0.23 3.09 6.75 -83.78 -0.57 2.53 16 17 N -0.88 -8.13 9.09 32.41 0.29 -7.84 16 18 C -0.22 -3.27 9.90 -39.38 -0.39 -3.66 16 19 C -0.01 -0.23 9.43 -39.61 -0.37 -0.60 16 20 C -0.21 -4.96 9.88 -26.73 -0.26 -5.23 16 21 C -0.15 -3.59 9.45 -26.73 -0.25 -3.84 16 22 H 0.26 6.42 8.32 -40.82 -0.34 6.08 16 23 H 0.11 2.44 8.14 -51.92 -0.42 2.02 16 24 H 0.05 1.16 7.95 -51.92 -0.41 0.74 16 25 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 26 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 27 H 0.40 2.82 8.84 -40.82 -0.36 2.46 16 28 H 0.40 2.94 8.84 -40.82 -0.36 2.58 16 29 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.12 2.30 7.45 -52.49 -0.39 1.91 16 31 H 0.06 1.38 8.08 -51.93 -0.42 0.96 16 32 H 0.08 1.82 8.14 -51.93 -0.42 1.39 16 33 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 34 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 307.44 15.07 4.63 4.63 Total: -1.00 -31.23 307.44 -8.99 -40.22 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -4.45 Total: 8.71 kcal Atomic # 6 Polarization: -39.04 SS G_CDS: -3.23 Total: -42.28 kcal Atomic # 7 Polarization: -30.27 SS G_CDS: 1.01 Total: -29.26 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.60 Total: -22.37 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Atomic # 16 Polarization: 27.62 SS G_CDS: -1.33 Total: 26.29 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.23 -8.99 -40.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855100.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.275 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds