Wall clock time and date at job start Mon Mar 30 2020 06:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00048 * 2 1 4 4 H 1.48505 * 109.46807 * 239.99573 * 3 2 1 5 5 H 1.48498 * 109.47203 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47208 * 119.99755 * 3 2 1 7 7 C 1.37880 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00191 * 173.43955 * 7 2 1 9 9 C 1.50705 * 119.99964 * 353.43967 * 7 2 1 10 10 C 1.53001 * 115.54863 * 85.38973 * 9 7 2 11 11 S 1.81397 * 109.47206 * 39.76340 * 10 9 7 12 12 O 1.42099 * 109.47107 * 76.18277 * 11 10 9 13 13 C 1.76201 * 102.99928 * 185.24050 * 11 10 9 14 14 C 1.38289 * 119.92195 * 90.00026 * 13 11 10 15 15 C 1.38101 * 120.07007 * 180.02562 * 14 13 11 16 16 C 1.38909 * 119.92813 * 359.97438 * 15 14 13 17 17 N 1.39680 * 120.07739 * 179.97438 * 16 15 14 18 18 C 1.38916 * 119.85154 * 0.26115 * 16 15 14 19 19 C 1.38107 * 119.91895 * 359.48523 * 18 16 15 20 20 C 1.52999 * 117.51455 * 231.09219 * 9 7 2 21 21 C 1.52999 * 60.00090 * 107.48187 * 20 9 7 22 22 H 0.96998 * 119.99622 * 5.05306 * 1 2 3 23 23 H 1.09000 * 109.46723 * 279.76467 * 10 9 7 24 24 H 1.08999 * 109.46824 * 159.76435 * 10 9 7 25 25 H 1.07991 * 119.96524 * 359.97438 * 14 13 11 26 26 H 1.08005 * 120.03790 * 179.97438 * 15 14 13 27 27 H 0.96998 * 119.99428 * 0.02562 * 17 16 15 28 28 H 0.96998 * 119.99955 * 179.72397 * 17 16 15 29 29 H 1.08000 * 120.03614 * 179.72620 * 18 16 15 30 30 H 1.07996 * 119.95583 * 180.25330 * 19 18 16 31 31 H 1.09002 * 117.49260 * 214.97095 * 20 9 7 32 32 H 1.08994 * 117.50409 * 359.97438 * 20 9 7 33 33 H 1.09002 * 117.49452 * 252.51139 * 21 20 9 34 34 H 1.08996 * 117.52235 * 107.47679 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0793 -1.1972 -0.1063 9 6 1.2584 -2.4949 0.1502 10 6 0.6998 -3.0880 -1.1448 11 16 1.9035 -2.8603 -2.4827 12 8 2.9578 -3.8017 -2.3365 13 6 1.0381 -3.4512 -3.8992 14 6 0.2710 -2.5808 -4.6517 15 6 -0.4090 -3.0407 -5.7622 16 6 -0.3213 -4.3792 -6.1234 17 7 -1.0082 -4.8478 -7.2457 18 6 0.4462 -5.2518 -5.3625 19 6 1.1279 -4.7842 -4.2561 20 6 1.7486 -3.4717 1.2209 21 6 0.4445 -2.6993 1.4296 22 1 -0.4849 0.8368 -0.0740 23 1 -0.2309 -2.5832 -1.4037 24 1 0.5093 -4.1520 -1.0045 25 1 0.2029 -1.5404 -4.3701 26 1 -1.0083 -2.3605 -6.3493 27 1 -1.5469 -4.2383 -7.7741 28 1 -0.9430 -5.7818 -7.4992 29 1 0.5129 -6.2940 -5.6380 30 1 1.7280 -5.4612 -3.6665 31 1 1.6731 -4.5370 1.0026 32 1 2.6111 -3.1739 1.8170 33 1 0.4491 -1.8930 2.1631 34 1 -0.4891 -3.2559 1.3486 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083855100.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:07 Heat of formation + Delta-G solvation = -14.317371 kcal Electronic energy + Delta-G solvation = -17518.492890 eV Core-core repulsion = 14735.399617 eV Total energy + Delta-G solvation = -2783.093272 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.10592 -38.36909 -36.50630 -35.40551 -33.92995 -31.81504 -29.71271 -29.25250 -27.27331 -23.76631 -23.15574 -22.94274 -21.11887 -18.92573 -18.15204 -17.82615 -17.69368 -16.83401 -16.50621 -15.87749 -15.33500 -15.21148 -14.99267 -14.77901 -14.32081 -14.14637 -13.86477 -13.63781 -13.32764 -12.98560 -12.65610 -12.53452 -12.26298 -12.00186 -11.95193 -11.73764 -11.56307 -11.09230 -10.67566 -10.36941 -9.89244 -9.88958 -9.02470 -8.47169 -7.99606 -6.17562 0.26955 0.51656 1.29625 1.60516 1.62987 1.69215 2.28571 2.56093 2.86981 2.95679 3.21898 3.30220 3.50939 3.93557 4.09996 4.22754 4.44711 4.50020 4.65173 4.71993 4.78717 4.85418 4.94015 5.07332 5.11582 5.23529 5.26719 5.33024 5.55624 5.58296 5.59784 5.87687 5.93406 6.44698 6.52113 6.90478 6.97194 7.54148 9.08024 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.023514 B = 0.006068 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.476436 B = 4613.605669 C = 5114.728730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.054 3.946 3 Si 0.937 3.063 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.534 4.534 8 H 0.059 0.941 9 C 0.042 3.958 10 C -0.381 4.381 11 S 1.379 4.621 12 O -0.931 6.931 13 C -0.538 4.538 14 C 0.002 3.998 15 C -0.216 4.216 16 C 0.243 3.757 17 N -0.859 5.859 18 C -0.225 4.225 19 C -0.037 4.037 20 C -0.212 4.212 21 C -0.149 4.149 22 H 0.268 0.732 23 H 0.111 0.889 24 H 0.043 0.957 25 H 0.158 0.842 26 H 0.157 0.843 27 H 0.412 0.588 28 H 0.408 0.592 29 H 0.134 0.866 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.740 -2.506 -14.115 15.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.151 4.151 3 Si 0.762 3.238 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.572 4.572 8 H 0.077 0.923 9 C 0.041 3.959 10 C -0.519 4.519 11 S 1.582 4.418 12 O -0.927 6.927 13 C -0.637 4.637 14 C -0.018 4.018 15 C -0.239 4.239 16 C 0.135 3.865 17 N -0.398 5.398 18 C -0.249 4.249 19 C -0.057 4.057 20 C -0.250 4.250 21 C -0.188 4.188 22 H 0.077 0.923 23 H 0.130 0.870 24 H 0.062 0.938 25 H 0.176 0.824 26 H 0.174 0.826 27 H 0.242 0.758 28 H 0.237 0.763 29 H 0.152 0.848 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.980 -2.057 -14.037 14.735 hybrid contribution -0.516 -1.907 0.480 2.032 sum -4.496 -3.964 -13.558 14.824 Atomic orbital electron populations 1.70059 1.06992 1.28133 1.47319 1.25495 0.95353 1.01167 0.93043 0.85934 0.78982 0.79420 0.79504 1.17616 1.20523 1.20915 1.20592 0.93070 0.89498 1.54017 0.92325 1.18526 0.98158 0.93839 0.85422 1.27105 1.12640 1.01276 1.10846 1.69633 0.79058 1.11124 0.82030 1.92792 1.47194 1.66988 1.85765 1.27778 1.16931 1.00498 1.18510 1.20983 0.89612 0.99772 0.91438 1.21046 1.07018 0.94470 1.01379 1.17994 0.88888 0.92791 0.86820 1.42494 1.54447 1.14193 1.28641 1.20766 1.04774 1.00295 0.99088 1.20840 0.94536 0.94751 0.95535 1.23090 0.98481 0.95942 1.07438 1.22436 0.92492 1.00768 1.03062 0.92254 0.87037 0.93804 0.82423 0.82587 0.75754 0.76278 0.84802 0.88581 0.91405 0.90238 0.91216 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.08 12.92 21.45 0.28 -44.80 16 2 C 0.05 2.63 5.39 84.66 0.46 3.08 16 3 Si 0.94 38.46 29.55 68.60 2.03 40.49 16 4 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 5 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.53 -27.21 7.54 25.60 0.19 -27.02 16 8 H 0.06 3.03 7.82 -2.91 -0.02 3.00 16 9 C 0.04 2.09 1.65 -52.93 -0.09 2.00 16 10 C -0.38 -17.31 6.00 71.98 0.43 -16.88 16 11 S 1.38 57.77 12.39 -56.49 -0.70 57.07 16 12 O -0.93 -48.08 16.89 -148.98 -2.52 -50.60 16 13 C -0.54 -19.31 5.61 22.29 0.13 -19.18 16 14 C 0.00 0.05 9.74 22.25 0.22 0.27 16 15 C -0.22 -5.06 9.90 22.40 0.22 -4.84 16 16 C 0.24 5.66 6.75 38.21 0.26 5.92 16 17 N -0.86 -12.05 9.09 -51.36 -0.47 -12.51 16 18 C -0.23 -6.39 9.90 22.40 0.22 -6.17 16 19 C -0.04 -1.32 9.43 22.25 0.21 -1.11 16 20 C -0.21 -10.12 9.88 30.59 0.30 -9.82 16 21 C -0.15 -7.18 9.45 30.59 0.29 -6.89 16 22 H 0.27 12.81 8.32 -92.71 -0.77 12.04 16 23 H 0.11 4.97 8.14 -2.39 -0.02 4.95 16 24 H 0.04 1.99 7.95 -2.39 -0.02 1.97 16 25 H 0.16 3.69 8.06 -2.92 -0.02 3.67 16 26 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 27 H 0.41 3.77 8.84 -92.71 -0.82 2.95 16 28 H 0.41 4.29 8.84 -92.71 -0.82 3.47 16 29 H 0.13 3.14 8.06 -2.91 -0.02 3.11 16 30 H 0.10 3.86 7.45 -2.91 -0.02 3.84 16 31 H 0.07 3.10 8.08 -2.39 -0.02 3.08 16 32 H 0.08 3.72 8.14 -2.39 -0.02 3.70 16 33 H 0.07 3.50 8.14 -2.39 -0.02 3.48 16 34 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -67.68 307.44 0.94 -66.74 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: -0.52 Total: 24.24 kcal Atomic # 6 Polarization: -83.47 SS G_CDS: 2.84 Total: -80.63 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -0.19 Total: -57.31 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -2.52 Total: -50.60 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Atomic # 16 Polarization: 57.77 SS G_CDS: -0.70 Total: 57.07 kcal Total: -67.68 0.94 -66.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855100.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.421 kcal (2) G-P(sol) polarization free energy of solvation -67.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds