Wall clock time and date at job start Mon Mar 30 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 119.99732 * 2 1 4 4 H 1.48501 * 109.47080 * 270.00041 * 3 2 1 5 5 H 1.48501 * 109.47383 * 29.99935 * 3 2 1 6 6 H 1.48495 * 109.47376 * 149.99776 * 3 2 1 7 7 C 1.37878 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00065 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99784 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47050 * 184.91221 * 9 7 2 11 11 C 1.46345 * 110.99750 * 292.02010 * 10 9 7 12 12 C 1.53564 * 109.56995 * 290.64770 * 11 10 9 13 13 C 1.51844 * 106.73940 * 297.87955 * 12 11 10 14 14 O 1.21310 * 121.80370 * 219.03043 * 13 12 11 15 15 C 1.47265 * 116.39661 * 39.03683 * 13 12 11 16 16 C 1.39804 * 120.13598 * 170.49552 * 15 13 12 17 17 C 1.37821 * 119.70869 * 178.92005 * 16 15 13 18 18 Cl 1.73605 * 119.94864 * 180.28166 * 17 16 15 19 19 C 1.38799 * 120.10344 * 0.53620 * 17 16 15 20 20 C 1.37797 * 120.72274 * 359.74073 * 19 17 16 21 21 C 1.38253 * 111.00063 * 164.20691 * 10 9 7 22 22 H 0.96996 * 119.99787 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47133 * 64.90572 * 9 7 2 24 24 H 1.09008 * 109.47019 * 304.90751 * 9 7 2 25 25 H 1.08999 * 109.45326 * 50.67926 * 11 10 9 26 26 H 1.09001 * 109.45174 * 170.61589 * 11 10 9 27 27 H 1.08999 * 109.99859 * 57.18810 * 12 11 10 28 28 H 1.08997 * 109.99889 * 178.57745 * 12 11 10 29 29 H 1.07998 * 120.14567 * 359.18628 * 16 15 13 30 30 H 1.07995 * 119.63721 * 180.02562 * 19 17 16 31 31 H 1.08002 * 119.86774 * 180.19277 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5739 -0.1170 11 6 3.6927 -3.3448 1.0881 12 6 4.5440 -2.8320 2.2588 13 6 5.9955 -3.0670 1.8800 14 8 6.8165 -3.4373 2.6928 15 6 6.3530 -2.8212 0.4727 16 6 7.6945 -2.8187 0.0794 17 6 8.0180 -2.6098 -1.2439 18 17 9.6815 -2.6129 -1.7404 19 6 7.0161 -2.3918 -2.1794 20 6 5.6906 -2.3861 -1.8030 21 6 5.3376 -2.5968 -0.4710 22 1 -0.4849 0.8400 -0.0004 23 1 3.8745 -0.7579 0.9318 24 1 3.8752 -0.6060 -0.8417 25 1 2.6361 -3.2318 1.3306 26 1 3.9139 -4.3975 0.9121 27 1 4.3661 -1.7674 2.4108 28 1 4.3014 -3.3849 3.1663 29 1 8.4738 -2.9842 0.8086 30 1 7.2780 -2.2293 -3.2145 31 1 4.9220 -2.2181 -2.5429 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084042307.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:46 Heat of formation + Delta-G solvation = -9.584813 kcal Electronic energy + Delta-G solvation = -17605.195631 eV Core-core repulsion = 14684.430776 eV Total energy + Delta-G solvation = -2920.764854 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.70901 -38.21419 -37.33304 -36.02723 -32.88054 -31.74797 -30.45692 -29.82905 -27.38840 -24.03440 -23.54176 -22.51906 -20.88184 -18.96067 -17.42736 -16.73628 -16.40455 -16.05175 -14.90879 -14.72164 -14.69002 -14.34355 -13.93505 -13.82059 -13.31724 -13.09550 -12.53254 -12.48765 -11.96639 -11.77790 -11.73803 -11.37704 -11.14704 -10.98518 -10.80331 -10.66735 -10.17818 -9.67573 -9.43581 -9.07521 -8.90521 -8.75320 -7.60226 -6.25036 -4.25737 0.64990 1.24334 2.12078 2.41526 3.15252 3.23381 3.25442 3.66630 4.08950 4.19015 4.24270 4.79438 4.90119 5.05967 5.09325 5.21439 5.28446 5.39908 5.42357 5.86381 5.90898 5.93661 6.08040 6.18932 6.21761 6.35967 6.52369 6.59349 6.65931 7.30770 7.37017 7.56020 7.77300 8.36548 8.80543 9.33728 10.87116 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021792 B = 0.006320 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.585732 B = 4429.233654 C = 5119.019084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.869 3.131 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.521 4.521 8 H 0.086 0.914 9 C 0.170 3.830 10 N -0.494 5.494 11 C 0.069 3.931 12 C -0.202 4.202 13 C 0.406 3.594 14 O -0.460 6.460 15 C -0.220 4.220 16 C -0.034 4.034 17 C -0.079 4.079 18 Cl -0.078 7.078 19 C -0.062 4.062 20 C -0.127 4.127 21 C 0.193 3.807 22 H 0.267 0.733 23 H 0.006 0.994 24 H 0.034 0.966 25 H 0.114 0.886 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.815 -4.290 -1.800 13.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.696 3.304 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.559 4.559 8 H 0.104 0.896 9 C 0.048 3.952 10 N -0.208 5.208 11 C -0.058 4.058 12 C -0.241 4.241 13 C 0.285 3.715 14 O -0.336 6.336 15 C -0.225 4.225 16 C -0.054 4.054 17 C -0.107 4.107 18 Cl -0.050 7.050 19 C -0.082 4.082 20 C -0.147 4.147 21 C 0.093 3.907 22 H 0.077 0.923 23 H 0.023 0.977 24 H 0.052 0.948 25 H 0.132 0.868 26 H 0.090 0.910 27 H 0.130 0.870 28 H 0.119 0.881 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 12.865 -4.554 -1.762 13.761 hybrid contribution 0.883 1.291 0.382 1.610 sum 13.748 -3.263 -1.380 14.197 Atomic orbital electron populations 1.69866 1.06099 1.27227 1.49634 1.24832 0.94721 0.98756 0.94400 0.86957 0.80346 0.84164 0.78940 1.19835 1.20842 1.19210 1.20919 0.87869 0.95120 1.52036 0.89641 1.20373 0.97676 0.80932 0.96184 1.57957 1.10384 1.17184 1.35254 1.22177 1.02065 0.96386 0.85215 1.23035 0.93352 1.05569 1.02106 1.22706 0.90602 0.71595 0.86585 1.90500 1.54179 1.35396 1.53565 1.20738 0.93465 1.12551 0.95756 1.21008 0.95658 0.94496 0.94199 1.20627 0.85229 1.10377 0.94429 1.98345 1.17640 1.97392 1.91605 1.21088 0.91477 0.96278 0.99312 1.21113 0.95654 1.02802 0.95177 1.19289 0.88513 0.90169 0.92775 0.92295 0.97687 0.94842 0.86807 0.91022 0.87032 0.88117 0.84448 0.84599 0.83598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.28 13.96 55.43 0.77 -24.51 16 2 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.87 19.80 27.37 -169.99 -4.65 15.14 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -5.87 6.68 56.52 0.38 -5.49 16 7 C -0.52 -13.18 9.05 -34.44 -0.31 -13.49 16 8 H 0.09 2.34 7.36 -52.49 -0.39 1.95 16 9 C 0.17 3.63 3.62 -4.98 -0.02 3.61 16 10 N -0.49 -9.14 4.40 -172.38 -0.76 -9.90 16 11 C 0.07 1.13 5.62 -3.83 -0.02 1.11 16 12 C -0.20 -3.10 6.16 -27.03 -0.17 -3.26 16 13 C 0.41 6.72 6.98 -30.08 -0.21 6.51 16 14 O -0.46 -8.34 17.35 5.53 0.10 -8.25 16 15 C -0.22 -3.57 5.82 -104.82 -0.61 -4.18 16 16 C -0.03 -0.50 9.40 -39.15 -0.37 -0.87 16 17 C -0.08 -1.07 6.32 -39.53 -0.25 -1.32 16 18 Cl -0.08 -0.94 28.95 -51.86 -1.50 -2.44 16 19 C -0.06 -0.80 9.79 -39.54 -0.39 -1.19 16 20 C -0.13 -1.88 9.49 -39.31 -0.37 -2.26 16 21 C 0.19 3.23 5.04 -83.71 -0.42 2.81 16 22 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 23 H 0.01 0.12 5.67 -51.93 -0.29 -0.18 16 24 H 0.03 0.72 6.82 -51.92 -0.35 0.37 16 25 H 0.11 1.99 6.69 -51.93 -0.35 1.65 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.11 1.81 6.46 -51.93 -0.34 1.47 16 28 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 29 H 0.14 1.94 7.76 -52.49 -0.41 1.54 16 30 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 31 H 0.15 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 277.16 15.07 4.18 4.18 Total: -1.00 -27.84 277.16 -8.08 -35.91 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -2.97 Total: 0.48 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -3.23 Total: -10.62 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.01 Total: -34.41 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.10 Total: -8.25 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.65 Total: 15.14 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.50 Total: -2.44 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.84 -8.08 -35.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084042307.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.329 kcal (2) G-P(sol) polarization free energy of solvation -27.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds