Wall clock time and date at job start Mon Mar 30 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 119.99732 * 2 1 4 4 H 1.48501 * 109.47080 * 270.00041 * 3 2 1 5 5 H 1.48501 * 109.47383 * 29.99935 * 3 2 1 6 6 H 1.48495 * 109.47376 * 149.99776 * 3 2 1 7 7 C 1.37878 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00065 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99784 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47050 * 184.91221 * 9 7 2 11 11 C 1.46345 * 110.99750 * 292.02010 * 10 9 7 12 12 C 1.53564 * 109.56995 * 290.64770 * 11 10 9 13 13 C 1.51844 * 106.73940 * 297.87955 * 12 11 10 14 14 O 1.21310 * 121.80370 * 219.03043 * 13 12 11 15 15 C 1.47265 * 116.39661 * 39.03683 * 13 12 11 16 16 C 1.39804 * 120.13598 * 170.49552 * 15 13 12 17 17 C 1.37821 * 119.70869 * 178.92005 * 16 15 13 18 18 Cl 1.73605 * 119.94864 * 180.28166 * 17 16 15 19 19 C 1.38799 * 120.10344 * 0.53620 * 17 16 15 20 20 C 1.37797 * 120.72274 * 359.74073 * 19 17 16 21 21 C 1.38253 * 111.00063 * 164.20691 * 10 9 7 22 22 H 0.96996 * 119.99787 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47133 * 64.90572 * 9 7 2 24 24 H 1.09008 * 109.47019 * 304.90751 * 9 7 2 25 25 H 1.08999 * 109.45326 * 50.67926 * 11 10 9 26 26 H 1.09001 * 109.45174 * 170.61589 * 11 10 9 27 27 H 1.08999 * 109.99859 * 57.18810 * 12 11 10 28 28 H 1.08997 * 109.99889 * 178.57745 * 12 11 10 29 29 H 1.07998 * 120.14567 * 359.18628 * 16 15 13 30 30 H 1.07995 * 119.63721 * 180.02562 * 19 17 16 31 31 H 1.08002 * 119.86774 * 180.19277 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5739 -0.1170 11 6 3.6927 -3.3448 1.0881 12 6 4.5440 -2.8320 2.2588 13 6 5.9955 -3.0670 1.8800 14 8 6.8165 -3.4373 2.6928 15 6 6.3530 -2.8212 0.4727 16 6 7.6945 -2.8187 0.0794 17 6 8.0180 -2.6098 -1.2439 18 17 9.6815 -2.6129 -1.7404 19 6 7.0161 -2.3918 -2.1794 20 6 5.6906 -2.3861 -1.8030 21 6 5.3376 -2.5968 -0.4710 22 1 -0.4849 0.8400 -0.0004 23 1 3.8745 -0.7579 0.9318 24 1 3.8752 -0.6060 -0.8417 25 1 2.6361 -3.2318 1.3306 26 1 3.9139 -4.3975 0.9121 27 1 4.3661 -1.7674 2.4108 28 1 4.3014 -3.3849 3.1663 29 1 8.4738 -2.9842 0.8086 30 1 7.2780 -2.2293 -3.2145 31 1 4.9220 -2.2181 -2.5429 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084042307.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:46 Heat of formation + Delta-G solvation = -25.544474 kcal Electronic energy + Delta-G solvation = -17605.887694 eV Core-core repulsion = 14684.430776 eV Total energy + Delta-G solvation = -2921.456917 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.98726 -39.50921 -38.56329 -37.12981 -34.79914 -33.06184 -31.65243 -31.28244 -28.98792 -25.44701 -24.74646 -24.02424 -22.26640 -20.24277 -19.08917 -18.18420 -17.65930 -17.43699 -16.44021 -16.13044 -15.99892 -15.64998 -15.43149 -15.02434 -14.64244 -14.52210 -14.09789 -13.70911 -13.52052 -13.15986 -12.94701 -12.79373 -12.52066 -12.46772 -12.13442 -11.97662 -11.87103 -11.55405 -10.81972 -10.73852 -10.23230 -10.19071 -8.93721 -8.27730 -6.31931 -0.55326 0.07772 1.06017 1.18846 1.36677 1.39568 1.46929 2.33810 2.46713 2.78118 2.93851 3.07676 3.63031 3.70579 3.90920 4.01060 4.11265 4.15096 4.25082 4.53660 4.67771 4.77024 4.80139 4.86699 4.96821 5.05929 5.09040 5.12851 5.46056 5.49704 5.82903 6.20257 6.29448 6.56234 6.74867 7.30995 8.87768 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021792 B = 0.006320 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.585732 B = 4429.233654 C = 5119.019084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.021 3.979 3 Si 0.931 3.069 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.251 1.251 7 C -0.516 4.516 8 H 0.051 0.949 9 C 0.180 3.820 10 N -0.505 5.505 11 C 0.070 3.930 12 C -0.195 4.195 13 C 0.409 3.591 14 O -0.480 6.480 15 C -0.229 4.229 16 C -0.039 4.039 17 C -0.074 4.074 18 Cl -0.060 7.060 19 C -0.048 4.048 20 C -0.130 4.130 21 C 0.173 3.827 22 H 0.267 0.733 23 H 0.007 0.993 24 H 0.038 0.962 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.120 0.880 29 H 0.142 0.858 30 H 0.168 0.832 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.232 -3.866 -2.615 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.178 4.178 3 Si 0.755 3.245 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.175 1.175 7 C -0.554 4.554 8 H 0.069 0.931 9 C 0.057 3.943 10 N -0.219 5.219 11 C -0.057 4.057 12 C -0.234 4.234 13 C 0.289 3.711 14 O -0.357 6.357 15 C -0.234 4.234 16 C -0.058 4.058 17 C -0.102 4.102 18 Cl -0.031 7.031 19 C -0.067 4.067 20 C -0.150 4.150 21 C 0.073 3.927 22 H 0.077 0.923 23 H 0.025 0.975 24 H 0.056 0.944 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.122 0.878 28 H 0.138 0.862 29 H 0.160 0.840 30 H 0.186 0.814 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 15.317 -4.150 -2.586 16.079 hybrid contribution 0.217 1.048 0.582 1.218 sum 15.534 -3.102 -2.004 15.967 Atomic orbital electron populations 1.70012 1.07965 1.28129 1.51928 1.25638 0.95367 1.02473 0.94341 0.85953 0.79515 0.79614 0.79385 1.18942 1.21049 1.17526 1.21125 0.90107 0.93717 1.50456 0.93061 1.20088 0.94864 0.83093 0.96234 1.57827 1.11971 1.15726 1.36411 1.22145 1.01171 0.97167 0.85199 1.22981 0.92648 1.05274 1.02458 1.22824 0.90652 0.70852 0.86746 1.90492 1.54639 1.36486 1.54089 1.20734 0.94052 1.13158 0.95415 1.21106 0.95140 0.94528 0.95040 1.20750 0.86403 1.08951 0.94058 1.98361 1.16150 1.97223 1.91348 1.21382 0.90361 0.94231 1.00695 1.21264 0.96744 1.02551 0.94474 1.19339 0.87543 0.92049 0.93738 0.92337 0.97527 0.94439 0.88628 0.89371 0.87786 0.86189 0.84037 0.81434 0.83127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.75 13.96 21.45 0.30 -54.45 16 2 C 0.02 1.09 5.47 84.65 0.46 1.56 16 3 Si 0.93 40.43 27.37 68.60 1.88 42.31 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.25 -10.17 6.68 99.48 0.67 -9.51 16 7 C -0.52 -26.51 9.05 25.60 0.23 -26.28 16 8 H 0.05 2.93 7.36 -2.91 -0.02 2.90 16 9 C 0.18 7.58 3.62 85.56 0.31 7.89 16 10 N -0.51 -18.40 4.40 -699.29 -3.08 -21.48 16 11 C 0.07 2.30 5.62 86.60 0.49 2.79 16 12 C -0.19 -5.84 6.16 30.40 0.19 -5.65 16 13 C 0.41 13.05 6.98 28.43 0.20 13.24 16 14 O -0.48 -16.83 17.35 -3.12 -0.05 -16.89 16 15 C -0.23 -7.05 5.82 -19.99 -0.12 -7.17 16 16 C -0.04 -1.06 9.40 22.55 0.21 -0.85 16 17 C -0.07 -1.78 6.32 22.31 0.14 -1.64 16 18 Cl -0.06 -1.23 28.95 -2.72 -0.08 -1.31 16 19 C -0.05 -1.06 9.79 22.30 0.22 -0.84 16 20 C -0.13 -3.55 9.49 22.44 0.21 -3.33 16 21 C 0.17 5.51 5.04 38.94 0.20 5.71 16 22 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 23 H 0.01 0.30 5.67 -2.39 -0.01 0.28 16 24 H 0.04 1.55 6.82 -2.38 -0.02 1.54 16 25 H 0.10 3.46 6.69 -2.39 -0.02 3.44 16 26 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.10 3.31 6.46 -2.39 -0.02 3.29 16 28 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 29 H 0.14 3.72 7.76 -2.91 -0.02 3.70 16 30 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -59.56 277.16 2.82 -56.73 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 1.12 Total: 9.65 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 2.74 Total: -14.57 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -2.78 Total: -75.92 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.05 Total: -16.89 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 1.88 Total: 42.31 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -59.56 2.82 -56.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084042307.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.190 kcal (2) G-P(sol) polarization free energy of solvation -59.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds