Wall clock time and date at job start Mon Mar 30 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99758 * 2 1 4 4 H 1.48503 * 109.47374 * 240.00126 * 3 2 1 5 5 H 1.48493 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46658 * 120.00550 * 3 2 1 7 7 C 1.37879 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99743 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00016 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47120 * 180.02562 * 9 7 2 11 11 C 1.46338 * 111.00125 * 296.10836 * 10 9 7 12 12 C 1.53559 * 109.59123 * 183.05431 * 11 10 9 13 13 C 1.51844 * 106.75491 * 297.96469 * 12 11 10 14 14 O 1.21317 * 121.79529 * 219.09701 * 13 12 11 15 15 C 1.47197 * 116.40748 * 39.11381 * 13 12 11 16 16 C 1.39833 * 120.13375 * 170.47433 * 15 13 12 17 17 C 1.37658 * 119.73932 * 179.34727 * 16 15 13 18 18 C 1.38862 * 120.11206 * 359.47506 * 17 16 15 19 19 Cl 1.73603 * 119.64440 * 180.50259 * 18 17 16 20 20 C 1.37966 * 120.71034 * 0.51804 * 18 17 16 21 21 C 1.38201 * 110.99764 * 63.92151 * 10 9 7 22 22 H 0.96999 * 120.00453 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47012 * 60.00476 * 9 7 2 24 24 H 1.09002 * 109.47854 * 300.00834 * 9 7 2 25 25 H 1.09009 * 109.44515 * 63.02241 * 11 10 9 26 26 H 1.08995 * 109.43263 * 303.08481 * 11 10 9 27 27 H 1.08993 * 109.99402 * 178.65125 * 12 11 10 28 28 H 1.09003 * 109.99117 * 57.27151 * 12 11 10 29 29 H 1.08003 * 120.12728 * 359.11600 * 16 15 13 30 30 H 1.07996 * 119.94417 * 179.75904 * 17 16 15 31 31 H 1.07995 * 119.88419 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 3.0035 -3.6236 -1.2273 12 6 3.9349 -4.8445 -1.2280 13 6 4.8616 -4.6888 -0.0352 14 8 6.0356 -4.9887 -0.0944 15 6 4.2587 -4.1548 1.1969 16 6 4.9819 -4.1645 2.3936 17 6 4.4152 -3.6507 3.5381 18 6 3.1346 -3.1151 3.5015 19 17 2.4367 -2.4585 4.9492 20 6 2.4107 -3.0993 2.3271 21 6 2.9587 -3.6235 1.1583 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 3.5996 -2.7123 -1.2785 26 1 2.3403 -3.6725 -2.0909 27 1 4.5154 -4.8700 -2.1501 28 1 3.3503 -5.7592 -1.1289 29 1 5.9798 -4.5768 2.4207 30 1 4.9693 -3.6600 4.4651 31 1 1.4160 -2.6791 2.3137 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084042310.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:49 Heat of formation + Delta-G solvation = -14.887630 kcal Electronic energy + Delta-G solvation = -17871.096258 eV Core-core repulsion = 14950.101457 eV Total energy + Delta-G solvation = -2920.994802 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.43725 -38.08525 -36.96331 -35.75088 -33.16487 -31.77820 -29.96528 -29.52960 -26.73162 -23.67803 -23.25262 -23.11339 -20.47488 -18.86843 -17.15107 -16.85282 -16.13991 -15.64179 -15.00512 -14.74093 -14.13317 -14.04054 -13.77830 -13.48921 -13.36661 -12.79418 -12.35670 -12.08823 -11.76226 -11.62865 -11.38186 -11.07947 -11.02360 -10.94043 -10.65306 -10.46627 -10.24578 -10.00272 -9.33638 -9.14859 -8.64622 -8.44243 -7.24254 -6.27012 -4.37295 0.95703 1.78258 2.41870 2.65422 3.19660 3.24771 3.28583 3.93494 4.25453 4.34117 4.53295 5.04039 5.11055 5.15402 5.21907 5.42906 5.47700 5.66570 5.70451 5.99904 6.05223 6.11532 6.28520 6.39882 6.58157 6.63012 6.79425 7.03286 7.16512 7.40859 7.63119 7.79978 7.86665 7.91736 8.67240 9.31193 10.78647 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.013614 B = 0.009745 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.238232 B = 2872.601335 C = 4153.398745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.556 4.556 8 H 0.059 0.941 9 C 0.185 3.815 10 N -0.495 5.495 11 C 0.072 3.928 12 C -0.169 4.169 13 C 0.408 3.592 14 O -0.473 6.473 15 C -0.244 4.244 16 C -0.025 4.025 17 C -0.181 4.181 18 C 0.025 3.975 19 Cl -0.078 7.078 20 C -0.147 4.147 21 C 0.235 3.765 22 H 0.267 0.733 23 H 0.046 0.954 24 H 0.048 0.952 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.133 0.867 30 H 0.128 0.872 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.488 -6.938 3.012 8.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.595 4.595 8 H 0.077 0.923 9 C 0.063 3.937 10 N -0.203 5.203 11 C -0.054 4.054 12 C -0.207 4.207 13 C 0.289 3.711 14 O -0.350 6.350 15 C -0.249 4.249 16 C -0.044 4.044 17 C -0.201 4.201 18 C -0.002 4.002 19 Cl -0.049 7.049 20 C -0.168 4.168 21 C 0.128 3.872 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.111 0.889 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.151 0.849 30 H 0.146 0.854 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.507 -7.304 2.951 9.076 hybrid contribution 0.530 1.718 0.194 1.808 sum 5.037 -5.586 3.144 8.153 Atomic orbital electron populations 1.69898 1.05998 1.27603 1.48621 1.24870 0.94782 0.99247 0.94149 0.86644 0.79766 0.82744 0.79018 1.20047 1.20966 1.19857 1.21507 0.93184 0.91105 1.53656 0.92304 1.20155 0.90067 0.83785 0.99699 1.57595 1.18140 1.44122 1.00464 1.22037 0.95026 0.96558 0.91774 1.22583 0.98616 1.01169 0.98310 1.22531 0.87739 0.72305 0.88554 1.90484 1.17991 1.41333 1.85228 1.20080 0.95256 1.13233 0.96363 1.20915 0.98387 0.94449 0.90607 1.20676 0.94698 1.05426 0.99288 1.20923 0.94110 0.97630 0.87579 1.98350 1.84546 1.84696 1.37274 1.21152 1.02866 1.02865 0.89899 1.18745 0.88316 0.88661 0.91438 0.92298 0.93546 0.93399 0.91685 0.88924 0.88509 0.87721 0.84933 0.85363 0.82962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.78 13.29 55.43 0.74 -23.04 16 2 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 3 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.56 -13.78 7.30 -34.44 -0.25 -14.03 16 8 H 0.06 1.49 6.68 -52.48 -0.35 1.14 16 9 C 0.18 4.15 4.62 -4.98 -0.02 4.13 16 10 N -0.49 -9.48 4.63 -172.40 -0.80 -10.27 16 11 C 0.07 1.21 5.12 -3.84 -0.02 1.19 16 12 C -0.17 -2.42 6.45 -27.03 -0.17 -2.59 16 13 C 0.41 6.99 6.98 -30.11 -0.21 6.78 16 14 O -0.47 -8.87 17.35 5.53 0.10 -8.78 16 15 C -0.24 -4.37 5.82 -104.81 -0.61 -4.98 16 16 C -0.02 -0.40 9.62 -39.20 -0.38 -0.78 16 17 C -0.18 -2.83 9.81 -39.56 -0.39 -3.22 16 18 C 0.03 0.44 6.32 -39.45 -0.25 0.19 16 19 Cl -0.08 -1.23 28.93 -51.86 -1.50 -2.73 16 20 C -0.15 -2.83 8.27 -39.28 -0.32 -3.15 16 21 C 0.23 4.49 5.16 -83.74 -0.43 4.06 16 22 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 23 H 0.05 1.09 8.12 -51.93 -0.42 0.67 16 24 H 0.05 1.14 5.96 -51.93 -0.31 0.83 16 25 H 0.06 1.21 6.79 -51.92 -0.35 0.86 16 26 H 0.09 1.42 8.12 -51.93 -0.42 1.00 16 27 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.13 1.93 7.76 -52.48 -0.41 1.53 16 30 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 31 H 0.15 3.15 5.77 -52.49 -0.30 2.85 16 LS Contribution 277.83 15.07 4.19 4.19 Total: -1.00 -26.86 277.83 -8.43 -35.29 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -2.97 Total: 0.57 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -3.16 Total: -10.60 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: -0.06 Total: -33.32 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.10 Total: -8.78 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.50 Total: -2.73 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -26.86 -8.43 -35.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084042310.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.401 kcal (2) G-P(sol) polarization free energy of solvation -26.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds