Wall clock time and date at job start Mon Mar 30 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99758 * 2 1 4 4 H 1.48503 * 109.47374 * 240.00126 * 3 2 1 5 5 H 1.48493 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46658 * 120.00550 * 3 2 1 7 7 C 1.37879 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99743 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00016 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47120 * 180.02562 * 9 7 2 11 11 C 1.46338 * 111.00125 * 296.10836 * 10 9 7 12 12 C 1.53559 * 109.59123 * 183.05431 * 11 10 9 13 13 C 1.51844 * 106.75491 * 297.96469 * 12 11 10 14 14 O 1.21317 * 121.79529 * 219.09701 * 13 12 11 15 15 C 1.47197 * 116.40748 * 39.11381 * 13 12 11 16 16 C 1.39833 * 120.13375 * 170.47433 * 15 13 12 17 17 C 1.37658 * 119.73932 * 179.34727 * 16 15 13 18 18 C 1.38862 * 120.11206 * 359.47506 * 17 16 15 19 19 Cl 1.73603 * 119.64440 * 180.50259 * 18 17 16 20 20 C 1.37966 * 120.71034 * 0.51804 * 18 17 16 21 21 C 1.38201 * 110.99764 * 63.92151 * 10 9 7 22 22 H 0.96999 * 120.00453 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47012 * 60.00476 * 9 7 2 24 24 H 1.09002 * 109.47854 * 300.00834 * 9 7 2 25 25 H 1.09009 * 109.44515 * 63.02241 * 11 10 9 26 26 H 1.08995 * 109.43263 * 303.08481 * 11 10 9 27 27 H 1.08993 * 109.99402 * 178.65125 * 12 11 10 28 28 H 1.09003 * 109.99117 * 57.27151 * 12 11 10 29 29 H 1.08003 * 120.12728 * 359.11600 * 16 15 13 30 30 H 1.07996 * 119.94417 * 179.75904 * 17 16 15 31 31 H 1.07995 * 119.88419 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 3.0035 -3.6236 -1.2273 12 6 3.9349 -4.8445 -1.2280 13 6 4.8616 -4.6888 -0.0352 14 8 6.0356 -4.9887 -0.0944 15 6 4.2587 -4.1548 1.1969 16 6 4.9819 -4.1645 2.3936 17 6 4.4152 -3.6507 3.5381 18 6 3.1346 -3.1151 3.5015 19 17 2.4367 -2.4585 4.9492 20 6 2.4107 -3.0993 2.3271 21 6 2.9587 -3.6235 1.1583 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 3.5996 -2.7123 -1.2785 26 1 2.3403 -3.6725 -2.0909 27 1 4.5154 -4.8700 -2.1501 28 1 3.3503 -5.7592 -1.1289 29 1 5.9798 -4.5768 2.4207 30 1 4.9693 -3.6600 4.4651 31 1 1.4160 -2.6791 2.3137 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084042310.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:49 Heat of formation + Delta-G solvation = -29.446855 kcal Electronic energy + Delta-G solvation = -17871.727594 eV Core-core repulsion = 14950.101457 eV Total energy + Delta-G solvation = -2921.626137 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.84224 -39.49279 -38.36227 -37.10384 -34.98020 -33.28540 -31.30900 -30.98909 -28.50110 -25.20856 -24.80067 -24.48636 -21.99076 -20.21032 -18.80959 -18.45354 -17.55641 -17.08798 -16.69680 -16.13177 -15.70214 -15.38938 -15.24743 -14.93359 -14.89299 -14.26587 -13.74816 -13.63898 -13.28758 -13.04892 -12.92767 -12.69950 -12.59950 -12.43311 -12.23499 -11.99587 -11.92602 -11.65792 -10.80804 -10.62860 -10.58989 -9.82755 -8.76169 -8.21151 -6.38833 -0.42413 0.40204 1.07142 1.30035 1.36481 1.39037 1.45052 2.34275 2.54649 3.01205 3.07190 3.13762 3.73760 3.87348 3.91045 4.15354 4.23652 4.29251 4.43659 4.69157 4.73922 4.82365 4.91989 5.02151 5.12568 5.17914 5.29234 5.33332 5.61067 5.65954 5.79729 6.01662 6.35590 6.47201 6.73075 7.31676 8.80836 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.013614 B = 0.009745 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.238232 B = 2872.601335 C = 4153.398745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.030 3.970 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.551 4.551 8 H 0.051 0.949 9 C 0.199 3.801 10 N -0.494 5.494 11 C 0.070 3.930 12 C -0.154 4.154 13 C 0.408 3.592 14 O -0.489 6.489 15 C -0.253 4.253 16 C -0.023 4.023 17 C -0.168 4.168 18 C 0.021 3.979 19 Cl -0.066 7.066 20 C -0.168 4.168 21 C 0.216 3.784 22 H 0.267 0.733 23 H 0.032 0.968 24 H 0.030 0.970 25 H 0.043 0.957 26 H 0.106 0.894 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.154 0.846 30 H 0.161 0.839 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.091 -7.537 3.191 10.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.172 4.172 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.590 4.590 8 H 0.069 0.931 9 C 0.076 3.924 10 N -0.203 5.203 11 C -0.056 4.056 12 C -0.191 4.191 13 C 0.289 3.711 14 O -0.368 6.368 15 C -0.258 4.258 16 C -0.042 4.042 17 C -0.188 4.188 18 C -0.007 4.007 19 Cl -0.037 7.037 20 C -0.189 4.189 21 C 0.111 3.889 22 H 0.077 0.923 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.125 0.875 27 H 0.141 0.859 28 H 0.143 0.857 29 H 0.172 0.828 30 H 0.178 0.822 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.123 -7.914 3.134 10.485 hybrid contribution 0.077 1.862 0.229 1.878 sum 6.201 -6.052 3.363 9.294 Atomic orbital electron populations 1.69986 1.07075 1.28132 1.50071 1.25515 0.95409 1.01950 0.94288 0.85842 0.78715 0.79813 0.78853 1.19442 1.20606 1.20165 1.21662 0.92817 0.92137 1.52355 0.93124 1.19781 0.90315 0.84301 0.98009 1.57570 1.18437 1.42761 1.01523 1.22125 0.95243 0.96949 0.91258 1.22556 0.97755 1.00582 0.98236 1.22809 0.87726 0.71510 0.89033 1.90481 1.18627 1.42135 1.85551 1.20342 0.94742 1.13043 0.97653 1.21243 0.99069 0.93756 0.90129 1.21020 0.93814 1.03533 1.00427 1.21074 0.94670 0.97501 0.87450 1.98351 1.84556 1.84514 1.36300 1.21049 1.02392 1.04314 0.91189 1.18837 0.89087 0.89789 0.91188 0.92344 0.94973 0.95181 0.93822 0.87548 0.85885 0.85676 0.82825 0.82192 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.00 13.29 21.45 0.28 -49.71 16 2 C 0.03 1.55 5.46 84.66 0.46 2.01 16 3 Si 0.94 41.87 29.54 68.60 2.03 43.90 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.55 -27.70 7.30 25.60 0.19 -27.51 16 8 H 0.05 2.59 6.68 -2.91 -0.02 2.57 16 9 C 0.20 9.17 4.62 85.55 0.40 9.57 16 10 N -0.49 -18.94 4.63 -699.36 -3.24 -22.18 16 11 C 0.07 2.27 5.12 86.60 0.44 2.71 16 12 C -0.15 -4.03 6.45 30.40 0.20 -3.84 16 13 C 0.41 13.12 6.98 28.41 0.20 13.32 16 14 O -0.49 -17.21 17.35 -3.15 -0.05 -17.27 16 15 C -0.25 -8.67 5.82 -19.99 -0.12 -8.79 16 16 C -0.02 -0.70 9.62 22.52 0.22 -0.48 16 17 C -0.17 -4.85 9.81 22.28 0.22 -4.63 16 18 C 0.02 0.69 6.32 22.35 0.14 0.84 16 19 Cl -0.07 -2.03 28.93 -2.72 -0.08 -2.11 16 20 C -0.17 -6.53 8.27 22.47 0.19 -6.34 16 21 C 0.22 8.21 5.16 38.95 0.20 8.41 16 22 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 23 H 0.03 1.56 8.12 -2.38 -0.02 1.54 16 24 H 0.03 1.50 5.96 -2.39 -0.01 1.48 16 25 H 0.04 1.60 6.79 -2.38 -0.02 1.59 16 26 H 0.11 3.13 8.12 -2.39 -0.02 3.11 16 27 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.15 3.98 7.76 -2.91 -0.02 3.96 16 30 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 31 H 0.13 5.58 5.77 -2.91 -0.02 5.57 16 Total: -1.00 -56.98 277.83 2.83 -54.16 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.16 Total: 7.95 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 2.73 Total: -14.74 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: -2.96 Total: -71.89 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.05 Total: -17.27 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -0.08 Total: -2.11 kcal Total: -56.98 2.83 -54.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084042310.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.710 kcal (2) G-P(sol) polarization free energy of solvation -56.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds