Wall clock time and date at job start Mon Mar 30 2020 06:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38175 * 120.04869 * 2 1 4 4 Cl 1.73605 * 119.67354 * 0.02562 * 3 2 1 5 5 C 1.38838 * 120.65641 * 180.02562 * 3 2 1 6 6 C 1.37800 * 120.38142 * 0.05367 * 5 3 2 7 7 C 1.39681 * 119.62724 * 359.97438 * 6 5 3 8 8 C 1.38897 * 120.05110 * 180.02562 * 2 1 3 9 9 N 1.38453 * 120.52664 * 359.79600 * 8 2 1 10 10 C 1.36745 * 120.04156 * 341.23995 * 9 8 2 11 11 H 1.07999 * 119.99759 * 322.24667 * 10 9 8 12 12 C 1.38907 * 120.00419 * 141.96663 * 10 9 8 13 13 N 1.31502 * 119.99631 * 351.43615 * 12 10 9 14 14 Si 1.86793 * 120.00389 * 171.43794 * 12 10 9 15 15 H 1.48502 * 109.47222 * 59.99863 * 14 12 10 16 16 H 1.48503 * 109.47250 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47135 * 300.00113 * 14 12 10 18 18 C 1.46777 * 119.92201 * 161.51444 * 9 8 2 19 19 C 1.53154 * 109.05958 * 47.96371 * 18 9 8 20 20 C 1.46959 * 120.83257 * 179.85405 * 7 6 5 21 21 O 1.21333 * 121.26060 * 345.65871 * 20 7 6 22 22 H 1.08995 * 109.46649 * 262.90685 * 1 2 3 23 23 H 1.08991 * 109.47216 * 22.91052 * 1 2 3 24 24 H 1.09003 * 109.46854 * 142.91122 * 1 2 3 25 25 H 1.07996 * 119.81120 * 180.02562 * 5 3 2 26 26 H 1.07997 * 120.19262 * 179.97438 * 6 5 3 27 27 H 0.97001 * 120.00032 * 179.97438 * 13 12 10 28 28 H 1.08997 * 109.57764 * 167.84845 * 18 9 8 29 29 H 1.09007 * 109.57591 * 288.23462 * 18 9 8 30 30 H 1.08998 * 109.86289 * 183.46846 * 19 18 9 31 31 H 1.09001 * 109.69473 * 62.69132 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1989 1.1960 0.0000 4 17 1.3236 2.6953 0.0007 5 6 3.5872 1.2108 -0.0005 6 6 4.2967 0.0295 -0.0022 7 6 3.6114 -1.1877 -0.0028 8 6 2.2026 -1.2023 -0.0005 9 7 1.5225 -2.4082 0.0032 10 6 0.2111 -2.4534 0.3880 11 1 -0.1352 -1.8310 1.1998 12 6 -0.6771 -3.2954 -0.2691 13 7 -0.3025 -3.9211 -1.3634 14 14 -2.4033 -3.5389 0.4016 15 1 -3.1086 -2.2326 0.4392 16 1 -3.1471 -4.4786 -0.4754 17 1 -2.3265 -4.0996 1.7745 18 6 2.2124 -3.6392 -0.4007 19 6 3.5592 -3.7184 0.3242 20 6 4.3414 -2.4631 -0.0078 21 8 5.5255 -2.5099 -0.2683 22 1 -0.3632 -0.1269 1.0198 23 1 -0.3633 0.9465 -0.4000 24 1 -0.3633 -0.8198 -0.6198 25 1 4.1142 2.1535 -0.0001 26 1 5.3766 0.0445 -0.0030 27 1 -0.9225 -4.5094 -1.8221 28 1 1.6038 -4.5032 -0.1342 29 1 2.3810 -3.6269 -1.4776 30 1 4.1099 -4.5967 -0.0125 31 1 3.3945 -3.7762 1.4002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084042317.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:48 Heat of formation + Delta-G solvation = -19.809622 kcal Electronic energy + Delta-G solvation = -18111.724050 eV Core-core repulsion = 15190.515814 eV Total energy + Delta-G solvation = -2921.208235 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.48010 -39.35432 -38.13237 -36.94690 -34.62879 -33.73001 -31.57145 -30.65124 -28.40035 -26.17576 -24.62983 -24.09321 -22.03179 -19.95634 -19.45499 -18.05208 -17.12172 -17.07033 -16.56765 -15.87278 -15.54852 -15.45946 -15.20011 -14.84060 -14.30070 -14.09047 -13.71433 -13.39207 -13.24340 -13.12542 -12.93008 -12.75615 -12.54255 -12.28805 -12.15624 -12.01379 -11.96792 -11.50532 -10.86436 -10.50501 -10.44840 -9.47701 -8.56777 -8.25773 -5.87453 -0.17275 0.75556 1.24790 1.45666 1.48148 1.49905 1.55126 2.23312 2.79119 2.92070 3.11488 3.32729 4.01381 4.08602 4.15039 4.31017 4.33369 4.49512 4.69218 4.87255 4.88188 4.93417 4.98402 5.04976 5.18607 5.36859 5.41068 5.52468 5.62893 5.70587 5.84613 6.17541 6.58772 6.69474 7.18835 7.56658 8.64074 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.015593 B = 0.010059 C = 0.006343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.232887 B = 2782.863169 C = 4413.562819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.170 4.170 3 C 0.033 3.967 4 Cl -0.069 7.069 5 C -0.223 4.223 6 C -0.002 4.002 7 C -0.316 4.316 8 C 0.244 3.756 9 N -0.437 5.437 10 C -0.319 4.319 11 H 0.104 0.896 12 C 0.001 3.999 13 N -0.891 5.891 14 Si 0.977 3.023 15 H -0.262 1.262 16 H -0.285 1.285 17 H -0.265 1.265 18 C 0.154 3.846 19 C -0.176 4.176 20 C 0.408 3.592 21 O -0.513 6.513 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.145 0.855 26 H 0.137 0.863 27 H 0.275 0.725 28 H 0.089 0.911 29 H 0.040 0.960 30 H 0.112 0.888 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.569 4.470 3.365 5.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.175 4.175 3 C 0.005 3.995 4 Cl -0.040 7.040 5 C -0.245 4.245 6 C -0.021 4.021 7 C -0.324 4.324 8 C 0.123 3.877 9 N -0.122 5.122 10 C -0.447 4.447 11 H 0.121 0.879 12 C -0.203 4.203 13 N -0.526 5.526 14 Si 0.801 3.199 15 H -0.187 1.187 16 H -0.211 1.211 17 H -0.190 1.190 18 C 0.031 3.969 19 C -0.214 4.214 20 C 0.292 3.708 21 O -0.394 6.394 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.096 0.904 25 H 0.163 0.837 26 H 0.154 0.846 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.059 0.941 30 H 0.130 0.870 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.806 4.100 3.069 5.184 hybrid contribution -0.936 -0.196 -0.024 0.956 sum -0.130 3.904 3.045 4.953 Atomic orbital electron populations 1.20988 0.90009 1.01880 1.01975 1.19279 0.97230 0.89978 1.11037 1.20811 0.92273 0.85562 1.00869 1.98301 1.76922 1.32140 1.96643 1.20567 0.91070 0.98862 1.14013 1.20914 0.99518 0.90199 0.91461 1.19808 0.92093 0.95696 1.24847 1.18107 0.89993 0.86911 0.92657 1.42615 1.09779 1.02311 1.57474 1.19895 0.83928 1.25985 1.14905 0.87893 1.26205 1.02848 0.96767 0.94444 1.70017 1.38154 1.28141 1.16269 0.85192 0.77590 0.78819 0.78323 1.18654 1.21056 1.19009 1.21190 0.90298 0.88601 0.96791 1.22665 0.97266 0.97703 1.03762 1.22467 0.87038 0.90692 0.70616 1.90421 1.18306 1.89523 1.41198 0.91970 0.92594 0.90433 0.83715 0.84565 0.91537 0.89218 0.94149 0.86976 0.87417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.58 7.85 71.24 0.56 -3.02 16 2 C -0.17 -6.90 5.86 -19.72 -0.12 -7.02 16 3 C 0.03 1.20 6.32 22.40 0.14 1.34 16 4 Cl -0.07 -2.11 27.12 -2.72 -0.07 -2.19 16 5 C -0.22 -7.54 9.80 22.31 0.22 -7.32 16 6 C 0.00 -0.08 9.64 22.51 0.22 0.14 16 7 C -0.32 -12.99 5.85 -20.00 -0.12 -13.11 16 8 C 0.24 10.57 6.32 38.90 0.25 10.82 16 9 N -0.44 -19.53 2.88 -510.12 -1.47 -21.00 16 10 C -0.32 -14.38 5.86 84.09 0.49 -13.89 16 11 H 0.10 4.52 5.65 -2.91 -0.02 4.50 16 12 C 0.00 0.06 4.74 84.90 0.40 0.46 16 13 N -0.89 -42.74 11.56 21.66 0.25 -42.49 16 14 Si 0.98 36.08 29.56 68.60 2.03 38.10 16 15 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 16 H -0.29 -10.64 7.11 99.48 0.71 -9.94 16 17 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 18 C 0.15 6.44 4.94 86.38 0.43 6.87 16 19 C -0.18 -6.26 6.35 30.18 0.19 -6.07 16 20 C 0.41 16.42 6.90 28.25 0.19 16.61 16 21 O -0.51 -22.10 17.40 -3.19 -0.06 -22.15 16 22 H 0.06 2.31 6.76 -2.39 -0.02 2.29 16 23 H 0.06 1.96 6.59 -2.39 -0.02 1.95 16 24 H 0.08 3.41 5.52 -2.39 -0.01 3.40 16 25 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 26 H 0.14 4.52 7.82 -2.91 -0.02 4.50 16 27 H 0.27 12.65 8.31 -92.71 -0.77 11.88 16 28 H 0.09 3.85 6.84 -2.39 -0.02 3.83 16 29 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 31 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 Total: -1.00 -50.89 270.26 4.70 -46.19 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 1.17 Total: 17.72 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 2.86 Total: -14.18 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -1.22 Total: -63.50 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.06 Total: -22.15 kcal Atomic # 14 Polarization: 36.08 SS G_CDS: 2.03 Total: 38.10 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -0.07 Total: -2.19 kcal Total: -50.89 4.70 -46.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084042317.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.381 kcal (2) G-P(sol) polarization free energy of solvation -50.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds