Wall clock time and date at job start Mon Mar 30 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00232 * 2 1 4 4 H 1.48498 * 109.46999 * 270.00013 * 3 2 1 5 5 H 1.48506 * 109.46849 * 29.99642 * 3 2 1 6 6 H 1.48500 * 109.47639 * 149.99294 * 3 2 1 7 7 C 1.37881 * 120.00447 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00584 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99386 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47002 * 185.69462 * 9 7 2 11 11 C 1.46342 * 110.99617 * 27.37759 * 10 9 7 12 12 C 1.53564 * 109.57951 * 183.03631 * 11 10 9 13 13 C 1.51838 * 106.75016 * 297.93484 * 12 11 10 14 14 O 1.21317 * 121.80400 * 219.07292 * 13 12 11 15 15 C 1.47277 * 116.39866 * 39.09039 * 13 12 11 16 16 C 1.39814 * 120.14002 * 170.47617 * 15 13 12 17 17 C 1.37713 * 119.73942 * 179.48398 * 16 15 13 18 18 C 1.38713 * 120.13862 * 359.49948 * 17 16 15 19 19 C 1.37887 * 120.72402 * 0.49858 * 18 17 16 20 20 Cl 1.73595 * 119.88894 * 180.02562 * 19 18 17 21 21 C 1.38255 * 110.99874 * 155.19190 * 10 9 7 22 22 H 0.97002 * 119.99867 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47279 * 65.69831 * 9 7 2 24 24 H 1.08997 * 109.47592 * 305.69695 * 9 7 2 25 25 H 1.09003 * 109.45340 * 63.00781 * 11 10 9 26 26 H 1.08996 * 109.45627 * 303.07498 * 11 10 9 27 27 H 1.09001 * 109.99723 * 178.62448 * 12 11 10 28 28 H 1.09001 * 109.99525 * 57.24691 * 12 11 10 29 29 H 1.08003 * 120.13071 * 359.25844 * 16 15 13 30 30 H 1.08000 * 119.93253 * 179.77841 * 17 16 15 31 31 H 1.08000 * 119.63634 * 180.47503 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.1997 -3.6123 0.1386 11 6 3.4045 -3.1889 0.8533 12 6 4.4036 -4.3536 0.9127 13 6 3.7305 -5.4681 1.6938 14 8 4.3433 -6.1558 2.4834 15 6 2.2937 -5.6697 1.4409 16 6 1.6400 -6.7911 1.9605 17 6 0.2940 -6.9659 1.7279 18 6 -0.4129 -6.0279 0.9899 19 6 0.2192 -4.9174 0.4718 20 17 -0.6866 -3.7569 -0.4481 21 6 1.5840 -4.7230 0.6851 22 1 -0.4850 0.8401 -0.0004 23 1 0.7035 -2.6025 -0.9362 24 1 0.5498 -2.5138 0.8348 25 1 3.1384 -2.8870 1.8663 26 1 3.8591 -2.3468 0.3315 27 1 5.3139 -4.0381 1.4226 28 1 4.6390 -4.6945 -0.0955 29 1 2.1893 -7.5193 2.5389 30 1 -0.2134 -7.8329 2.1247 31 1 -1.4699 -6.1692 0.8189 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084042318.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:50 Heat of formation + Delta-G solvation = 22.584122 kcal Electronic energy + Delta-G solvation = -17942.834539 eV Core-core repulsion = 15023.464635 eV Total energy + Delta-G solvation = -2919.369905 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.48706 -38.16698 -36.74201 -35.86869 -32.96661 -31.64107 -30.35124 -29.61172 -26.57144 -24.14003 -23.38831 -22.68504 -20.67612 -18.92981 -17.25653 -16.45663 -16.16309 -15.79922 -15.00313 -14.45683 -14.40578 -14.03619 -14.01638 -13.90295 -13.54903 -12.81787 -12.33587 -12.00391 -11.79440 -11.70783 -11.39346 -11.24161 -11.02865 -10.85821 -10.55005 -10.13089 -9.98423 -9.57093 -9.18075 -8.62106 -8.55375 -8.00397 -7.09488 -6.18965 -4.24957 0.90560 1.58526 2.60175 2.74444 3.21019 3.28378 3.29142 3.85533 4.25551 4.31385 4.43165 4.96206 5.12554 5.15384 5.27247 5.35834 5.45747 5.46587 5.69952 5.84003 6.03309 6.13838 6.24737 6.38671 6.40259 6.60057 6.83459 7.09562 7.23247 7.50793 7.58459 7.78518 7.88864 8.21412 8.77156 9.39474 10.89213 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.008154 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.795348 B = 3433.260908 C = 4590.141845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.067 3.933 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.166 3.834 10 N -0.485 5.485 11 C 0.068 3.932 12 C -0.173 4.173 13 C 0.409 3.591 14 O -0.472 6.472 15 C -0.237 4.237 16 C -0.027 4.027 17 C -0.182 4.182 18 C -0.049 4.049 19 C -0.108 4.108 20 Cl -0.033 7.033 21 C 0.218 3.782 22 H 0.264 0.736 23 H 0.073 0.927 24 H 0.032 0.968 25 H 0.054 0.946 26 H 0.121 0.879 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.091 -9.542 1.281 9.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.137 4.137 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.588 4.588 8 H 0.091 0.909 9 C 0.046 3.954 10 N -0.191 5.191 11 C -0.057 4.057 12 C -0.211 4.211 13 C 0.289 3.711 14 O -0.349 6.349 15 C -0.242 4.242 16 C -0.045 4.045 17 C -0.202 4.202 18 C -0.068 4.068 19 C -0.138 4.138 20 Cl -0.004 7.004 21 C 0.109 3.891 22 H 0.074 0.926 23 H 0.090 0.910 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.138 0.862 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.379 -9.612 1.105 9.773 hybrid contribution -0.026 1.247 0.356 1.297 sum 1.354 -8.364 1.461 8.598 Atomic orbital electron populations 1.69957 1.05971 1.27070 1.48886 1.24935 0.94867 0.99219 0.94657 0.86530 0.79770 0.83078 0.78265 1.20477 1.21113 1.19764 1.21641 0.93557 0.90487 1.53114 0.90946 1.21352 0.89570 0.84308 1.00205 1.57336 1.09841 1.07567 1.44379 1.22332 0.88377 0.96905 0.98058 1.22679 0.99972 0.96043 1.02360 1.22595 0.87443 0.82066 0.79020 1.90484 1.68088 1.45281 1.31070 1.19958 0.96240 0.99833 1.08211 1.21141 0.94151 0.95018 0.94229 1.20788 0.94284 1.00902 1.04188 1.21055 0.99988 0.91415 0.94381 1.20834 0.91471 0.95893 1.05600 1.98428 1.75253 1.54943 1.71735 1.19049 0.89970 0.93003 0.87049 0.92650 0.91012 0.94980 0.92815 0.86177 0.88436 0.87632 0.85146 0.85378 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.24 13.29 55.43 0.74 -23.50 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 7 C -0.55 -13.97 8.36 -34.44 -0.29 -14.26 16 8 H 0.07 1.74 4.94 -52.49 -0.26 1.48 16 9 C 0.17 3.96 3.40 -4.97 -0.02 3.95 16 10 N -0.48 -9.92 4.68 -172.56 -0.81 -10.73 16 11 C 0.07 1.25 4.57 -3.83 -0.02 1.23 16 12 C -0.17 -2.63 6.45 -27.03 -0.17 -2.81 16 13 C 0.41 7.01 6.98 -30.07 -0.21 6.80 16 14 O -0.47 -8.77 17.35 5.53 0.10 -8.67 16 15 C -0.24 -4.13 5.82 -104.82 -0.61 -4.74 16 16 C -0.03 -0.40 9.62 -39.18 -0.38 -0.78 16 17 C -0.18 -2.45 10.04 -39.60 -0.40 -2.85 16 18 C -0.05 -0.73 9.78 -39.53 -0.39 -1.11 16 19 C -0.11 -1.97 5.95 -39.24 -0.23 -2.20 16 20 Cl -0.03 -0.65 22.63 -51.86 -1.17 -1.82 16 21 C 0.22 4.16 5.86 -83.68 -0.49 3.67 16 22 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 23 H 0.07 1.80 5.29 -51.93 -0.27 1.53 16 24 H 0.03 0.83 6.30 -51.93 -0.33 0.50 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.12 2.23 5.34 -51.93 -0.28 1.95 16 27 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.13 1.77 7.76 -52.48 -0.41 1.37 16 30 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 31 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 269.57 15.07 4.06 4.06 Total: -1.00 -28.22 269.57 -8.20 -36.42 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -2.79 Total: 0.55 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -3.30 Total: -11.45 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: -0.07 Total: -34.24 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.10 Total: -8.67 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.17 Total: -1.82 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.22 -8.20 -36.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084042318.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.006 kcal (2) G-P(sol) polarization free energy of solvation -28.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds