Wall clock time and date at job start Mon Mar 30 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00232 * 2 1 4 4 H 1.48498 * 109.46999 * 270.00013 * 3 2 1 5 5 H 1.48506 * 109.46849 * 29.99642 * 3 2 1 6 6 H 1.48500 * 109.47639 * 149.99294 * 3 2 1 7 7 C 1.37881 * 120.00447 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00584 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99386 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47002 * 185.69462 * 9 7 2 11 11 C 1.46342 * 110.99617 * 27.37759 * 10 9 7 12 12 C 1.53564 * 109.57951 * 183.03631 * 11 10 9 13 13 C 1.51838 * 106.75016 * 297.93484 * 12 11 10 14 14 O 1.21317 * 121.80400 * 219.07292 * 13 12 11 15 15 C 1.47277 * 116.39866 * 39.09039 * 13 12 11 16 16 C 1.39814 * 120.14002 * 170.47617 * 15 13 12 17 17 C 1.37713 * 119.73942 * 179.48398 * 16 15 13 18 18 C 1.38713 * 120.13862 * 359.49948 * 17 16 15 19 19 C 1.37887 * 120.72402 * 0.49858 * 18 17 16 20 20 Cl 1.73595 * 119.88894 * 180.02562 * 19 18 17 21 21 C 1.38255 * 110.99874 * 155.19190 * 10 9 7 22 22 H 0.97002 * 119.99867 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47279 * 65.69831 * 9 7 2 24 24 H 1.08997 * 109.47592 * 305.69695 * 9 7 2 25 25 H 1.09003 * 109.45340 * 63.00781 * 11 10 9 26 26 H 1.08996 * 109.45627 * 303.07498 * 11 10 9 27 27 H 1.09001 * 109.99723 * 178.62448 * 12 11 10 28 28 H 1.09001 * 109.99525 * 57.24691 * 12 11 10 29 29 H 1.08003 * 120.13071 * 359.25844 * 16 15 13 30 30 H 1.08000 * 119.93253 * 179.77841 * 17 16 15 31 31 H 1.08000 * 119.63634 * 180.47503 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.1997 -3.6123 0.1386 11 6 3.4045 -3.1889 0.8533 12 6 4.4036 -4.3536 0.9127 13 6 3.7305 -5.4681 1.6938 14 8 4.3433 -6.1558 2.4834 15 6 2.2937 -5.6697 1.4409 16 6 1.6400 -6.7911 1.9605 17 6 0.2940 -6.9659 1.7279 18 6 -0.4129 -6.0279 0.9899 19 6 0.2192 -4.9174 0.4718 20 17 -0.6866 -3.7569 -0.4481 21 6 1.5840 -4.7230 0.6851 22 1 -0.4850 0.8401 -0.0004 23 1 0.7035 -2.6025 -0.9362 24 1 0.5498 -2.5138 0.8348 25 1 3.1384 -2.8870 1.8663 26 1 3.8591 -2.3468 0.3315 27 1 5.3139 -4.0381 1.4226 28 1 4.6390 -4.6945 -0.0955 29 1 2.1893 -7.5193 2.5389 30 1 -0.2134 -7.8329 2.1247 31 1 -1.4699 -6.1692 0.8189 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084042318.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:50 Heat of formation + Delta-G solvation = 6.022239 kcal Electronic energy + Delta-G solvation = -17943.552717 eV Core-core repulsion = 15023.464635 eV Total energy + Delta-G solvation = -2920.088082 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.86803 -39.56744 -38.12859 -37.30907 -34.83572 -33.08166 -31.66242 -31.05469 -28.31143 -25.67789 -24.68626 -24.25854 -22.15845 -20.23048 -18.87877 -18.00342 -17.62143 -17.20454 -16.63882 -16.02643 -15.73795 -15.52364 -15.39247 -15.33807 -14.93559 -14.47882 -13.88334 -13.45873 -13.23669 -13.06384 -12.83617 -12.75749 -12.66908 -12.38652 -12.04928 -11.93268 -11.61188 -11.07651 -10.68249 -10.41193 -9.92277 -9.68421 -8.58316 -8.16324 -6.28113 -0.39407 0.27609 1.29513 1.35549 1.43592 1.44374 1.53341 2.38947 2.56227 2.96592 3.04983 3.16454 3.69161 3.87691 3.92118 4.09923 4.22385 4.28393 4.42130 4.60945 4.70348 4.81382 4.91841 4.98658 5.20879 5.24347 5.37806 5.45801 5.60221 5.76790 5.90737 6.01026 6.43027 6.50672 6.83585 7.39580 8.91349 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.008154 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.795348 B = 3433.260908 C = 4590.141845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.015 3.985 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.562 4.562 8 H 0.084 0.916 9 C 0.184 3.816 10 N -0.494 5.494 11 C 0.070 3.930 12 C -0.159 4.159 13 C 0.409 3.591 14 O -0.487 6.487 15 C -0.247 4.247 16 C -0.028 4.028 17 C -0.159 4.159 18 C -0.044 4.044 19 C -0.130 4.130 20 Cl -0.057 7.057 21 C 0.189 3.811 22 H 0.262 0.738 23 H 0.057 0.943 24 H 0.004 0.996 25 H 0.036 0.964 26 H 0.115 0.885 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.150 0.850 30 H 0.173 0.827 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.892 -11.057 1.971 11.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.599 4.599 8 H 0.102 0.898 9 C 0.061 3.939 10 N -0.203 5.203 11 C -0.055 4.055 12 C -0.197 4.197 13 C 0.290 3.710 14 O -0.365 6.365 15 C -0.252 4.252 16 C -0.047 4.047 17 C -0.178 4.178 18 C -0.063 4.063 19 C -0.159 4.159 20 Cl -0.028 7.028 21 C 0.083 3.917 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.022 0.978 25 H 0.054 0.946 26 H 0.132 0.868 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.168 0.832 30 H 0.191 0.809 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.192 -11.161 1.801 11.516 hybrid contribution -0.331 1.540 0.216 1.590 sum 1.861 -9.621 2.017 10.004 Atomic orbital electron populations 1.70095 1.07428 1.27609 1.50333 1.25757 0.95615 1.02573 0.94563 0.85532 0.78819 0.78933 0.78244 1.20166 1.21418 1.18543 1.22126 0.94441 0.91376 1.51989 0.89816 1.20900 0.89521 0.85207 0.98244 1.57322 1.09784 1.06939 1.46211 1.22279 0.88401 0.98105 0.96691 1.22631 0.99634 0.94115 1.03291 1.22773 0.87451 0.82094 0.78641 1.90479 1.68316 1.46042 1.31690 1.20170 0.96601 1.00307 1.08108 1.21503 0.95045 0.94432 0.93720 1.21285 0.93572 1.01139 1.01790 1.21449 1.01404 0.90206 0.93226 1.21120 0.91426 0.96751 1.06650 1.98414 1.75475 1.56396 1.72542 1.19207 0.90749 0.93036 0.88736 0.92890 0.92575 0.97814 0.94591 0.86770 0.86045 0.86130 0.83184 0.80920 0.82483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.76 13.29 21.45 0.28 -51.48 16 2 C 0.02 0.81 5.46 84.66 0.46 1.27 16 3 Si 0.96 41.67 29.54 68.60 2.03 43.70 16 4 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 7 C -0.56 -29.04 8.36 25.60 0.21 -28.82 16 8 H 0.08 4.03 4.94 -2.91 -0.01 4.02 16 9 C 0.18 9.03 3.40 85.56 0.29 9.32 16 10 N -0.49 -20.54 4.68 -699.86 -3.27 -23.81 16 11 C 0.07 2.56 4.57 86.60 0.40 2.96 16 12 C -0.16 -4.61 6.45 30.40 0.20 -4.42 16 13 C 0.41 13.36 6.98 28.43 0.20 13.56 16 14 O -0.49 -17.10 17.35 -3.14 -0.05 -17.15 16 15 C -0.25 -8.24 5.82 -19.99 -0.12 -8.35 16 16 C -0.03 -0.77 9.62 22.53 0.22 -0.55 16 17 C -0.16 -3.65 10.04 22.26 0.22 -3.43 16 18 C -0.04 -1.20 9.78 22.30 0.22 -0.98 16 19 C -0.13 -4.70 5.95 22.49 0.13 -4.56 16 20 Cl -0.06 -2.33 22.63 -2.72 -0.06 -2.39 16 21 C 0.19 7.20 5.86 38.96 0.23 7.43 16 22 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 23 H 0.06 2.95 5.29 -2.39 -0.01 2.93 16 24 H 0.00 0.21 6.30 -2.39 -0.02 0.20 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.11 4.23 5.34 -2.39 -0.01 4.22 16 27 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 28 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 29 H 0.15 3.51 7.76 -2.91 -0.02 3.48 16 30 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 31 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -61.84 269.57 2.75 -59.09 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 1.17 Total: 8.62 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 2.66 Total: -16.57 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: -2.99 Total: -75.29 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.05 Total: -17.15 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -0.06 Total: -2.39 kcal Total: -61.84 2.75 -59.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084042318.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.116 kcal (2) G-P(sol) polarization free energy of solvation -61.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds