Wall clock time and date at job start Mon Mar 30 2020 06:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00112 * 2 1 4 4 H 1.48499 * 109.47034 * 89.99756 * 3 2 1 5 5 H 1.48493 * 109.47158 * 209.99799 * 3 2 1 6 6 H 1.48502 * 109.47059 * 329.99988 * 3 2 1 7 7 C 1.37873 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99913 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00178 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47105 * 174.28414 * 9 7 2 11 11 H 1.09004 * 109.86899 * 48.07856 * 10 9 7 12 12 C 1.54318 * 109.87948 * 169.09274 * 10 9 7 13 13 C 1.55159 * 102.94265 * 141.61348 * 12 10 9 14 14 C 1.54915 * 101.57737 * 324.49369 * 13 12 10 15 15 N 1.47020 * 109.88062 * 286.90297 * 10 9 7 16 16 C 1.34775 * 125.65192 * 61.62561 * 15 10 9 17 17 O 1.21701 * 119.99901 * 5.96465 * 16 15 10 18 18 C 1.46580 * 120.00062 * 185.96852 * 16 15 10 19 19 C 1.36644 * 125.45619 * 175.09332 * 18 16 15 20 20 C 1.37477 * 113.29629 * 179.79852 * 19 18 16 21 21 C 1.33820 * 115.09864 * 0.49657 * 20 19 18 22 22 S 1.70620 * 110.95482 * 359.72363 * 21 20 19 23 23 H 0.97006 * 119.99873 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.46572 * 294.28054 * 9 7 2 25 25 H 1.08995 * 109.46891 * 54.28502 * 9 7 2 26 26 H 1.09007 * 110.72298 * 259.97255 * 12 10 9 27 27 H 1.08993 * 110.72433 * 23.24634 * 12 10 9 28 28 H 1.08996 * 111.01043 * 82.56827 * 13 12 10 29 29 H 1.09001 * 111.00579 * 206.42458 * 13 12 10 30 30 H 1.09003 * 110.36272 * 155.84857 * 14 13 12 31 31 H 1.08994 * 110.36993 * 278.06341 * 14 13 12 32 32 H 1.07997 * 123.35717 * 359.97438 * 19 18 16 33 33 H 1.08002 * 122.45170 * 180.24127 * 20 19 18 34 34 H 1.08002 * 124.52029 * 179.74800 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4401 -0.7000 6 1 1.4467 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6295 0.1430 11 1 3.4995 -3.2797 -0.5591 12 6 5.5400 -2.6764 -0.1278 13 6 6.0475 -3.7063 0.9159 14 6 5.1184 -3.4121 2.1201 15 7 3.8086 -3.1010 1.5191 16 6 2.6140 -3.2276 2.1302 17 8 1.5873 -3.0446 1.5029 18 6 2.5514 -3.5856 3.5502 19 6 1.4121 -3.6508 4.3018 20 6 1.6419 -4.0167 5.6069 21 6 2.9252 -4.2336 5.9181 22 16 3.9312 -3.9926 4.5613 23 1 -0.4850 0.8401 -0.0004 24 1 3.8752 -0.7709 -0.9363 25 1 3.8745 -0.5947 0.8350 26 1 5.7406 -3.0238 -1.1413 27 1 5.9925 -1.6996 0.0428 28 1 5.9106 -4.7262 0.5569 29 1 7.0904 -3.5208 1.1727 30 1 5.0421 -4.2888 2.7633 31 1 5.4902 -2.5582 2.6864 32 1 0.4287 -3.4389 3.9089 33 1 0.8454 -4.1175 6.3293 34 1 3.2770 -4.5230 6.8973 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084529381.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:18 Heat of formation + Delta-G solvation = 17.887554 kcal Electronic energy + Delta-G solvation = -18284.232515 eV Core-core repulsion = 15502.535753 eV Total energy + Delta-G solvation = -2781.696762 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.56747 -37.69148 -36.29565 -32.95582 -31.41815 -30.61213 -29.10417 -26.66973 -24.89068 -23.06156 -21.58188 -21.21777 -19.15385 -18.69204 -17.48735 -16.61553 -16.10141 -15.41443 -15.15911 -14.30438 -14.06221 -13.78255 -13.13088 -12.97804 -12.65988 -12.50793 -12.44301 -12.06250 -12.01327 -11.70421 -11.58237 -11.33866 -11.20486 -10.57765 -10.42918 -10.16526 -9.98709 -9.74974 -9.26313 -8.61861 -8.40057 -8.31281 -8.24351 -7.69422 -5.73595 -3.67539 0.85005 1.73638 2.13376 2.74379 3.39946 3.47744 3.48847 3.54486 3.98296 4.63975 4.76134 4.84441 5.09347 5.13053 5.33027 5.51010 5.54928 5.61108 5.67090 5.74172 5.75560 5.94660 6.09330 6.20042 6.22184 6.40403 6.55415 6.60172 6.66403 6.83416 7.26780 7.47282 7.97022 8.22829 8.75311 8.98591 9.69872 9.86070 11.38212 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.018387 B = 0.008211 C = 0.006387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.445054 B = 3409.441180 C = 4382.835490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.065 3.935 3 Si 0.861 3.139 4 H -0.283 1.283 5 H -0.270 1.270 6 H -0.290 1.290 7 C -0.507 4.507 8 H 0.118 0.882 9 C -0.023 4.023 10 C 0.154 3.846 11 H 0.072 0.928 12 C -0.132 4.132 13 C -0.127 4.127 14 C 0.092 3.908 15 N -0.611 5.611 16 C 0.580 3.420 17 O -0.450 6.450 18 C -0.231 4.231 19 C -0.073 4.073 20 C -0.143 4.143 21 C -0.266 4.266 22 S 0.185 5.815 23 H 0.256 0.744 24 H 0.021 0.979 25 H 0.011 0.989 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.154 0.846 33 H 0.137 0.863 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.739 -9.722 9.321 18.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.690 3.310 4 H -0.209 1.209 5 H -0.195 1.195 6 H -0.217 1.217 7 C -0.545 4.545 8 H 0.135 0.865 9 C -0.061 4.061 10 C 0.051 3.949 11 H 0.090 0.910 12 C -0.170 4.170 13 C -0.166 4.166 14 C -0.033 4.033 15 N -0.348 5.348 16 C 0.366 3.634 17 O -0.322 6.322 18 C -0.351 4.351 19 C -0.105 4.105 20 C -0.175 4.175 21 C -0.402 4.402 22 S 0.452 5.548 23 H 0.066 0.934 24 H 0.039 0.961 25 H 0.029 0.971 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.172 0.828 33 H 0.155 0.845 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 13.450 -9.615 8.801 18.730 hybrid contribution -1.091 1.283 0.718 1.831 sum 12.359 -8.332 9.519 17.685 Atomic orbital electron populations 1.69931 1.06015 1.25767 1.52492 1.25009 0.94585 0.98041 0.95798 0.87087 0.80503 0.85413 0.78047 1.20919 1.19481 1.21667 1.21980 0.88716 0.96348 1.47460 0.86454 1.20038 0.98865 0.90934 0.96230 1.21645 0.93160 0.98237 0.81830 0.90998 1.22793 0.95795 0.99308 0.99085 1.22714 0.98520 1.00034 0.95298 1.22341 0.84978 0.99827 0.96157 1.48158 1.04254 1.67205 1.15174 1.16504 0.83582 0.79324 0.84008 1.91004 1.32840 1.45031 1.63295 1.25046 0.97014 1.14199 0.98868 1.20826 0.99440 0.97696 0.92542 1.20003 0.96656 1.04075 0.96732 1.25553 0.99231 1.10181 1.05268 1.83175 1.09595 1.63766 0.98255 0.93403 0.96061 0.97067 0.90418 0.90749 0.90735 0.90279 0.91206 0.91406 0.82832 0.84496 0.82350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -29.51 13.96 55.43 0.77 -28.74 16 2 C 0.06 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.86 22.74 27.36 -169.99 -4.65 18.09 16 4 H -0.28 -7.46 7.11 56.52 0.40 -7.05 16 5 H -0.27 -6.75 6.71 56.52 0.38 -6.37 16 6 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 7 C -0.51 -15.08 7.71 -34.44 -0.27 -15.35 16 8 H 0.12 3.85 5.16 -52.95 -0.27 3.58 16 9 C -0.02 -0.56 3.51 -27.88 -0.10 -0.65 16 10 C 0.15 3.05 3.02 -66.96 -0.20 2.85 16 11 H 0.07 1.52 8.10 -51.93 -0.42 1.10 16 12 C -0.13 -1.89 6.46 -24.90 -0.16 -2.05 16 13 C -0.13 -1.47 7.09 -24.58 -0.17 -1.64 16 14 C 0.09 1.28 5.41 -2.52 -0.01 1.26 16 15 N -0.61 -11.70 3.06 -164.58 -0.50 -12.21 16 16 C 0.58 12.67 7.43 -12.90 -0.10 12.57 16 17 O -0.45 -12.11 12.63 5.19 0.07 -12.05 16 18 C -0.23 -4.16 6.38 -36.80 -0.23 -4.39 16 19 C -0.07 -1.24 10.01 -40.43 -0.40 -1.64 16 20 C -0.14 -1.94 10.15 -41.41 -0.42 -2.36 16 21 C -0.27 -3.22 10.92 29.18 0.32 -2.90 16 22 S 0.19 2.41 18.58 -107.50 -2.00 0.41 16 23 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 24 H 0.02 0.51 7.56 -51.93 -0.39 0.12 16 25 H 0.01 0.28 7.25 -51.93 -0.38 -0.10 16 26 H 0.08 0.98 8.14 -51.92 -0.42 0.55 16 27 H 0.07 1.05 7.85 -51.93 -0.41 0.65 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.86 5.28 -31.66 -0.17 0.69 16 31 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 32 H 0.15 2.74 8.06 -52.49 -0.42 2.31 16 33 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 34 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 286.28 15.07 4.31 4.31 Total: -1.00 -35.52 286.28 -8.00 -43.52 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.15 Total: -0.94 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -1.85 Total: -12.40 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.27 Total: -40.95 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.07 Total: -12.05 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.65 Total: 18.09 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -2.00 Total: 0.41 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -35.52 -8.00 -43.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084529381.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.406 kcal (2) G-P(sol) polarization free energy of solvation -35.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds