Wall clock time and date at job start Mon Mar 30 2020 06:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00112 * 2 1 4 4 H 1.48499 * 109.47034 * 89.99756 * 3 2 1 5 5 H 1.48493 * 109.47158 * 209.99799 * 3 2 1 6 6 H 1.48502 * 109.47059 * 329.99988 * 3 2 1 7 7 C 1.37873 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99913 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00178 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47105 * 174.28414 * 9 7 2 11 11 H 1.09004 * 109.86899 * 48.07856 * 10 9 7 12 12 C 1.54318 * 109.87948 * 169.09274 * 10 9 7 13 13 C 1.55159 * 102.94265 * 141.61348 * 12 10 9 14 14 C 1.54915 * 101.57737 * 324.49369 * 13 12 10 15 15 N 1.47020 * 109.88062 * 286.90297 * 10 9 7 16 16 C 1.34775 * 125.65192 * 61.62561 * 15 10 9 17 17 O 1.21701 * 119.99901 * 5.96465 * 16 15 10 18 18 C 1.46580 * 120.00062 * 185.96852 * 16 15 10 19 19 C 1.36644 * 125.45619 * 175.09332 * 18 16 15 20 20 C 1.37477 * 113.29629 * 179.79852 * 19 18 16 21 21 C 1.33820 * 115.09864 * 0.49657 * 20 19 18 22 22 S 1.70620 * 110.95482 * 359.72363 * 21 20 19 23 23 H 0.97006 * 119.99873 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.46572 * 294.28054 * 9 7 2 25 25 H 1.08995 * 109.46891 * 54.28502 * 9 7 2 26 26 H 1.09007 * 110.72298 * 259.97255 * 12 10 9 27 27 H 1.08993 * 110.72433 * 23.24634 * 12 10 9 28 28 H 1.08996 * 111.01043 * 82.56827 * 13 12 10 29 29 H 1.09001 * 111.00579 * 206.42458 * 13 12 10 30 30 H 1.09003 * 110.36272 * 155.84857 * 14 13 12 31 31 H 1.08994 * 110.36993 * 278.06341 * 14 13 12 32 32 H 1.07997 * 123.35717 * 359.97438 * 19 18 16 33 33 H 1.08002 * 122.45170 * 180.24127 * 20 19 18 34 34 H 1.08002 * 124.52029 * 179.74800 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4401 -0.7000 6 1 1.4467 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6295 0.1430 11 1 3.4995 -3.2797 -0.5591 12 6 5.5400 -2.6764 -0.1278 13 6 6.0475 -3.7063 0.9159 14 6 5.1184 -3.4121 2.1201 15 7 3.8086 -3.1010 1.5191 16 6 2.6140 -3.2276 2.1302 17 8 1.5873 -3.0446 1.5029 18 6 2.5514 -3.5856 3.5502 19 6 1.4121 -3.6508 4.3018 20 6 1.6419 -4.0167 5.6069 21 6 2.9252 -4.2336 5.9181 22 16 3.9312 -3.9926 4.5613 23 1 -0.4850 0.8401 -0.0004 24 1 3.8752 -0.7709 -0.9363 25 1 3.8745 -0.5947 0.8350 26 1 5.7406 -3.0238 -1.1413 27 1 5.9925 -1.6996 0.0428 28 1 5.9106 -4.7262 0.5569 29 1 7.0904 -3.5208 1.1727 30 1 5.0421 -4.2888 2.7633 31 1 5.4902 -2.5582 2.6864 32 1 0.4287 -3.4389 3.9089 33 1 0.8454 -4.1175 6.3293 34 1 3.2770 -4.5230 6.8973 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084529381.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:18 Heat of formation + Delta-G solvation = -7.356424 kcal Electronic energy + Delta-G solvation = -18285.327176 eV Core-core repulsion = 15502.535753 eV Total energy + Delta-G solvation = -2782.791423 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.06161 -38.94084 -37.75899 -35.06320 -33.02722 -32.24527 -30.35732 -28.36989 -26.17670 -24.62226 -23.26194 -22.35991 -20.61774 -19.99045 -19.07553 -18.50898 -17.46893 -16.74134 -16.61493 -16.21785 -15.57504 -15.13637 -14.64061 -14.32025 -14.27823 -13.81462 -13.77518 -13.60557 -13.45269 -13.27254 -13.18375 -12.95625 -12.45472 -12.28490 -11.98685 -11.70452 -11.51802 -11.34886 -11.13725 -10.66064 -10.27284 -9.78771 -9.47886 -9.30210 -8.07459 -6.06878 -0.37815 0.56746 1.03429 1.28504 1.30913 1.41710 1.53612 2.11091 2.40787 2.45597 3.21975 3.61978 3.70136 4.01226 4.13477 4.19136 4.33780 4.40762 4.53456 4.58478 4.61565 4.80779 4.95177 5.00892 5.08560 5.09412 5.18527 5.28240 5.29943 5.41298 5.49995 5.74187 5.78636 6.51573 6.71030 7.05658 7.49367 7.62115 9.07860 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.018387 B = 0.008211 C = 0.006387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.445054 B = 3409.441180 C = 4382.835490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.010 4.010 3 Si 0.936 3.064 4 H -0.280 1.280 5 H -0.240 1.240 6 H -0.289 1.289 7 C -0.506 4.506 8 H 0.074 0.926 9 C -0.019 4.019 10 C 0.146 3.854 11 H 0.042 0.958 12 C -0.121 4.121 13 C -0.112 4.112 14 C 0.080 3.920 15 N -0.614 5.614 16 C 0.568 3.432 17 O -0.530 6.530 18 C -0.291 4.291 19 C -0.083 4.083 20 C -0.159 4.159 21 C -0.242 4.242 22 S 0.269 5.731 23 H 0.255 0.745 24 H 0.031 0.969 25 H 0.010 0.990 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.162 0.838 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.689 -10.147 11.521 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.204 4.204 3 Si 0.761 3.239 4 H -0.206 1.206 5 H -0.164 1.164 6 H -0.215 1.215 7 C -0.544 4.544 8 H 0.092 0.908 9 C -0.057 4.057 10 C 0.043 3.957 11 H 0.061 0.939 12 C -0.159 4.159 13 C -0.149 4.149 14 C -0.043 4.043 15 N -0.349 5.349 16 C 0.357 3.643 17 O -0.408 6.408 18 C -0.411 4.411 19 C -0.117 4.117 20 C -0.189 4.189 21 C -0.379 4.379 22 S 0.537 5.463 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.028 0.972 26 H 0.116 0.884 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.141 0.859 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.140 0.860 33 H 0.179 0.821 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 18.497 -10.066 11.007 23.762 hybrid contribution -2.625 1.252 0.134 2.911 sum 15.872 -8.814 11.141 21.301 Atomic orbital electron populations 1.70148 1.08310 1.26644 1.55263 1.26004 0.95510 1.02748 0.96120 0.85877 0.80003 0.79725 0.78306 1.20625 1.16371 1.21480 1.22300 0.91875 0.94904 1.45326 0.90790 1.19977 0.95102 0.94344 0.96314 1.21616 0.97189 0.94638 0.82249 0.93948 1.22749 0.90700 1.01144 1.01349 1.22771 0.99960 0.99628 0.92564 1.22772 0.82658 1.01145 0.97728 1.48326 1.05585 1.65881 1.15110 1.17215 0.83458 0.78044 0.85599 1.90965 1.35367 1.48973 1.65467 1.24832 1.00449 1.17727 0.98056 1.20919 0.98304 0.98007 0.94513 1.20088 0.98474 1.04997 0.95346 1.26133 0.98336 1.06668 1.06776 1.82622 1.06028 1.61498 0.96200 0.93675 0.95065 0.97163 0.88385 0.89784 0.89696 0.85917 0.89427 0.90003 0.86017 0.82068 0.77960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -67.12 13.96 21.45 0.30 -66.82 16 2 C -0.01 -0.68 5.47 84.65 0.46 -0.21 16 3 Si 0.94 48.26 27.36 68.60 1.88 50.14 16 4 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 5 H -0.24 -11.12 6.71 99.48 0.67 -10.45 16 6 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 7 C -0.51 -31.93 7.71 25.60 0.20 -31.74 16 8 H 0.07 5.34 5.16 -10.22 -0.05 5.29 16 9 C -0.02 -0.96 3.51 29.85 0.10 -0.85 16 10 C 0.15 5.84 3.02 45.34 0.14 5.98 16 11 H 0.04 1.91 8.10 -2.38 -0.02 1.89 16 12 C -0.12 -3.07 6.46 31.78 0.21 -2.86 16 13 C -0.11 -2.02 7.09 31.99 0.23 -1.79 16 14 C 0.08 1.96 5.41 86.86 0.47 2.43 16 15 N -0.61 -23.68 3.06 -792.81 -2.43 -26.11 16 16 C 0.57 26.40 7.43 86.42 0.64 27.04 16 17 O -0.53 -31.66 12.63 -4.35 -0.05 -31.71 16 18 C -0.29 -10.72 6.38 24.07 0.15 -10.56 16 19 C -0.08 -2.98 10.01 21.72 0.22 -2.76 16 20 C -0.16 -4.05 10.15 21.09 0.21 -3.84 16 21 C -0.24 -4.84 10.92 66.82 0.73 -4.11 16 22 S 0.27 6.06 18.58 -56.49 -1.05 5.01 16 23 H 0.25 16.70 8.31 -92.70 -0.77 15.93 16 24 H 0.03 1.47 7.56 -2.39 -0.02 1.45 16 25 H 0.01 0.50 7.25 -2.39 -0.02 0.48 16 26 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 27 H 0.08 2.01 7.85 -2.39 -0.02 1.99 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 1.81 5.28 -15.27 -0.08 1.73 16 31 H 0.08 1.82 8.11 -2.39 -0.02 1.80 16 32 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 33 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 34 H 0.20 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -88.25 286.28 3.36 -84.90 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 0.96 Total: 7.88 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 3.76 Total: -23.28 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -2.13 Total: -92.92 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.05 Total: -31.71 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 1.88 Total: 50.14 kcal Atomic # 16 Polarization: 6.06 SS G_CDS: -1.05 Total: 5.01 kcal Total: -88.25 3.36 -84.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084529381.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.540 kcal (2) G-P(sol) polarization free energy of solvation -88.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds