Wall clock time and date at job start Mon Mar 30 2020 06:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00016 * 2 1 4 4 H 1.48502 * 109.47374 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47476 * 300.00448 * 3 2 1 6 6 H 1.48497 * 109.47031 * 60.00446 * 3 2 1 7 7 C 1.37884 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99605 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99979 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46977 * 185.61033 * 9 7 2 11 11 H 1.08999 * 110.00182 * 314.27275 * 10 9 7 12 12 C 1.54327 * 109.88381 * 193.17701 * 10 9 7 13 13 C 1.55155 * 102.94462 * 218.38814 * 12 10 9 14 14 C 1.54911 * 101.57981 * 35.50547 * 13 12 10 15 15 N 1.47021 * 109.88237 * 75.37377 * 10 9 7 16 16 C 1.34776 * 125.64557 * 298.62088 * 15 10 9 17 17 O 1.21701 * 120.00493 * 353.81674 * 16 15 10 18 18 C 1.46588 * 119.99771 * 173.81620 * 16 15 10 19 19 C 1.36645 * 125.45645 * 174.17228 * 18 16 15 20 20 C 1.37468 * 113.29753 * 179.97438 * 19 18 16 21 21 C 1.33818 * 115.10389 * 359.97438 * 20 19 18 22 22 S 1.70620 * 110.95108 * 359.72314 * 21 20 19 23 23 H 0.96994 * 119.99715 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47120 * 65.61172 * 9 7 2 25 25 H 1.08997 * 109.47536 * 305.61177 * 9 7 2 26 26 H 1.09004 * 110.71597 * 100.02643 * 12 10 9 27 27 H 1.08997 * 110.87152 * 336.83320 * 12 10 9 28 28 H 1.08991 * 111.00846 * 277.42896 * 13 12 10 29 29 H 1.09000 * 110.99878 * 153.57484 * 13 12 10 30 30 H 1.09000 * 110.36549 * 204.15106 * 14 13 12 31 31 H 1.09004 * 110.36796 * 81.82772 * 14 13 12 32 32 H 1.08000 * 123.35552 * 359.97240 * 19 18 16 33 33 H 1.08006 * 122.45096 * 179.97438 * 20 19 18 34 34 H 1.07999 * 124.52717 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2394 -3.6586 0.1398 11 1 3.0845 -3.5116 -0.5327 12 6 1.5343 -4.9919 -0.1871 13 6 2.1460 -5.9717 0.8487 14 6 2.3172 -5.0520 2.0835 15 7 2.7145 -3.7453 1.5285 16 6 3.3955 -2.7866 2.1869 17 8 3.7639 -1.7877 1.5972 18 6 3.6925 -2.9469 3.6134 19 6 4.4669 -2.1054 4.3613 20 6 4.5790 -2.4936 5.6753 21 6 3.9197 -3.6134 5.9947 22 16 3.1016 -4.2476 4.6384 23 1 -0.4849 0.8400 0.0004 24 1 0.7016 -2.6014 -0.9363 25 1 0.5515 -2.5148 0.8352 26 1 1.7654 -5.3112 -1.2033 27 1 0.4567 -4.9058 -0.0471 28 1 3.1092 -6.3503 0.5070 29 1 1.4600 -6.7910 1.0639 30 1 3.0972 -5.4387 2.7393 31 1 1.3749 -4.9638 2.6243 32 1 4.9436 -1.2232 3.9601 33 1 5.1570 -1.9355 6.3971 34 1 3.9033 -4.0540 6.9806 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084529384.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:19 Heat of formation + Delta-G solvation = 9.166704 kcal Electronic energy + Delta-G solvation = -18249.158622 eV Core-core repulsion = 15467.083695 eV Total energy + Delta-G solvation = -2782.074927 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.53218 -37.70178 -36.30884 -32.98309 -31.39036 -30.33271 -29.07640 -26.26462 -24.89321 -23.16303 -21.83248 -21.18546 -19.14315 -18.73432 -17.39636 -16.37985 -15.89920 -15.46001 -15.24998 -14.34133 -14.00928 -13.75775 -13.08705 -12.95564 -12.66967 -12.51433 -12.34317 -12.09369 -11.94916 -11.40349 -11.33303 -11.22881 -10.96627 -10.56613 -10.41309 -10.26624 -10.09858 -9.78815 -9.01618 -8.63487 -8.41374 -8.34784 -8.15601 -7.68780 -5.76551 -3.69432 0.80795 1.70704 2.11016 2.68540 3.48535 3.54646 3.58068 3.67596 3.92939 4.71188 4.84423 4.88629 5.07753 5.18124 5.35401 5.48694 5.61424 5.67229 5.68755 5.72851 5.83883 6.03796 6.14064 6.18459 6.30468 6.37698 6.53290 6.68437 6.87664 6.96127 7.76600 7.80819 8.24482 8.26839 8.60997 8.98212 9.48922 9.91977 11.36067 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.017078 B = 0.008542 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.189067 B = 3277.153748 C = 4521.645939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.048 3.952 3 Si 0.889 3.111 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.494 4.494 8 H 0.091 0.909 9 C 0.013 3.987 10 C 0.143 3.857 11 H 0.066 0.934 12 C -0.130 4.130 13 C -0.128 4.128 14 C 0.088 3.912 15 N -0.606 5.606 16 C 0.587 3.413 17 O -0.472 6.472 18 C -0.233 4.233 19 C -0.077 4.077 20 C -0.144 4.144 21 C -0.264 4.264 22 S 0.196 5.804 23 H 0.253 0.747 24 H 0.021 0.979 25 H 0.021 0.979 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.151 0.849 33 H 0.137 0.863 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.958 -13.652 9.422 17.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.150 4.150 3 Si 0.718 3.282 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.532 4.532 8 H 0.108 0.892 9 C -0.025 4.025 10 C 0.042 3.958 11 H 0.084 0.916 12 C -0.168 4.168 13 C -0.166 4.166 14 C -0.037 4.037 15 N -0.342 5.342 16 C 0.374 3.626 17 O -0.346 6.346 18 C -0.353 4.353 19 C -0.109 4.109 20 C -0.176 4.176 21 C -0.401 4.401 22 S 0.463 5.537 23 H 0.063 0.937 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.169 0.831 33 H 0.155 0.845 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.167 -14.166 8.932 17.526 hybrid contribution 1.143 2.268 0.686 2.631 sum 6.310 -11.898 9.618 16.550 Atomic orbital electron populations 1.70000 1.06052 1.25877 1.53357 1.24974 0.94609 0.99170 0.96242 0.86548 0.80804 0.84020 0.76805 1.19417 1.21755 1.21637 1.21956 0.94943 0.89825 1.46453 0.89153 1.19542 0.93670 0.91950 0.97305 1.21918 0.97575 0.95692 0.80661 0.91557 1.22775 1.00774 0.94477 0.98762 1.22707 1.01442 0.97247 0.95179 1.22370 1.00021 0.84646 0.96656 1.48205 1.55969 1.15273 1.14740 1.16423 0.79829 0.82734 0.83659 1.90924 1.49725 1.27604 1.66357 1.25060 1.08910 1.02496 0.98881 1.20766 0.97819 0.99703 0.92602 1.19978 1.03339 0.97737 0.96530 1.25492 1.06570 1.02796 1.05206 1.83218 1.47511 1.25520 0.97416 0.93722 0.96070 0.96058 0.90656 0.90543 0.90917 0.90326 0.91001 0.91393 0.83096 0.84481 0.82220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.82 13.29 55.43 0.74 -28.08 16 2 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 3 Si 0.89 24.04 29.54 -169.99 -5.02 19.02 16 4 H -0.27 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 6 H -0.29 -7.81 7.11 56.52 0.40 -7.40 16 7 C -0.49 -14.67 7.10 -34.44 -0.24 -14.91 16 8 H 0.09 2.77 5.20 -52.49 -0.27 2.50 16 9 C 0.01 0.34 4.43 -27.89 -0.12 0.21 16 10 C 0.14 2.96 3.00 -66.95 -0.20 2.76 16 11 H 0.07 1.44 8.07 -51.93 -0.42 1.02 16 12 C -0.13 -1.99 6.44 -24.90 -0.16 -2.15 16 13 C -0.13 -1.55 7.09 -24.58 -0.17 -1.73 16 14 C 0.09 1.26 5.26 -2.53 -0.01 1.25 16 15 N -0.61 -11.82 3.07 -164.57 -0.50 -12.33 16 16 C 0.59 12.71 7.46 -12.89 -0.10 12.62 16 17 O -0.47 -12.25 12.79 5.19 0.07 -12.19 16 18 C -0.23 -4.12 6.34 -36.79 -0.23 -4.36 16 19 C -0.08 -1.24 10.02 -40.44 -0.41 -1.65 16 20 C -0.14 -1.88 10.15 -41.41 -0.42 -2.30 16 21 C -0.26 -3.13 10.92 29.18 0.32 -2.81 16 22 S 0.20 2.57 18.68 -107.50 -2.01 0.56 16 23 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 25 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.08 1.19 7.86 -51.93 -0.41 0.79 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.90 5.82 -40.03 -0.23 0.67 16 31 H 0.07 0.95 7.92 -51.93 -0.41 0.54 16 32 H 0.15 2.47 8.06 -52.49 -0.42 2.05 16 33 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 290.35 15.07 4.38 4.38 Total: -1.00 -34.92 290.35 -8.46 -43.38 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -4.26 Total: -3.05 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -1.85 Total: -11.69 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.23 Total: -40.41 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.07 Total: -12.19 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -5.02 Total: 19.02 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -2.01 Total: 0.56 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.92 -8.46 -43.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084529384.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.549 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds