Wall clock time and date at job start Mon Mar 30 2020 06:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00016 * 2 1 4 4 H 1.48502 * 109.47374 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47476 * 300.00448 * 3 2 1 6 6 H 1.48497 * 109.47031 * 60.00446 * 3 2 1 7 7 C 1.37884 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99605 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99979 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46977 * 185.61033 * 9 7 2 11 11 H 1.08999 * 110.00182 * 314.27275 * 10 9 7 12 12 C 1.54327 * 109.88381 * 193.17701 * 10 9 7 13 13 C 1.55155 * 102.94462 * 218.38814 * 12 10 9 14 14 C 1.54911 * 101.57981 * 35.50547 * 13 12 10 15 15 N 1.47021 * 109.88237 * 75.37377 * 10 9 7 16 16 C 1.34776 * 125.64557 * 298.62088 * 15 10 9 17 17 O 1.21701 * 120.00493 * 353.81674 * 16 15 10 18 18 C 1.46588 * 119.99771 * 173.81620 * 16 15 10 19 19 C 1.36645 * 125.45645 * 174.17228 * 18 16 15 20 20 C 1.37468 * 113.29753 * 179.97438 * 19 18 16 21 21 C 1.33818 * 115.10389 * 359.97438 * 20 19 18 22 22 S 1.70620 * 110.95108 * 359.72314 * 21 20 19 23 23 H 0.96994 * 119.99715 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47120 * 65.61172 * 9 7 2 25 25 H 1.08997 * 109.47536 * 305.61177 * 9 7 2 26 26 H 1.09004 * 110.71597 * 100.02643 * 12 10 9 27 27 H 1.08997 * 110.87152 * 336.83320 * 12 10 9 28 28 H 1.08991 * 111.00846 * 277.42896 * 13 12 10 29 29 H 1.09000 * 110.99878 * 153.57484 * 13 12 10 30 30 H 1.09000 * 110.36549 * 204.15106 * 14 13 12 31 31 H 1.09004 * 110.36796 * 81.82772 * 14 13 12 32 32 H 1.08000 * 123.35552 * 359.97240 * 19 18 16 33 33 H 1.08006 * 122.45096 * 179.97438 * 20 19 18 34 34 H 1.07999 * 124.52717 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2394 -3.6586 0.1398 11 1 3.0845 -3.5116 -0.5327 12 6 1.5343 -4.9919 -0.1871 13 6 2.1460 -5.9717 0.8487 14 6 2.3172 -5.0520 2.0835 15 7 2.7145 -3.7453 1.5285 16 6 3.3955 -2.7866 2.1869 17 8 3.7639 -1.7877 1.5972 18 6 3.6925 -2.9469 3.6134 19 6 4.4669 -2.1054 4.3613 20 6 4.5790 -2.4936 5.6753 21 6 3.9197 -3.6134 5.9947 22 16 3.1016 -4.2476 4.6384 23 1 -0.4849 0.8400 0.0004 24 1 0.7016 -2.6014 -0.9363 25 1 0.5515 -2.5148 0.8352 26 1 1.7654 -5.3112 -1.2033 27 1 0.4567 -4.9058 -0.0471 28 1 3.1092 -6.3503 0.5070 29 1 1.4600 -6.7910 1.0639 30 1 3.0972 -5.4387 2.7393 31 1 1.3749 -4.9638 2.6243 32 1 4.9436 -1.2232 3.9601 33 1 5.1570 -1.9355 6.3971 34 1 3.9033 -4.0540 6.9806 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084529384.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:19 Heat of formation + Delta-G solvation = -14.069892 kcal Electronic energy + Delta-G solvation = -18250.166236 eV Core-core repulsion = 15467.083695 eV Total energy + Delta-G solvation = -2783.082541 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.04186 -38.92928 -37.75089 -35.16599 -32.92930 -32.01469 -30.31770 -28.08784 -26.16276 -24.88652 -23.45439 -22.36122 -20.62776 -19.94993 -18.87097 -18.35718 -17.41287 -16.92251 -16.63930 -16.23167 -15.50619 -15.11723 -14.66228 -14.27485 -14.10707 -13.80900 -13.72022 -13.58378 -13.33579 -13.17543 -13.10920 -12.93868 -12.40231 -12.38015 -12.32309 -11.73370 -11.52368 -11.46462 -10.97828 -10.51939 -10.33093 -9.82927 -9.46833 -9.29148 -8.12636 -6.09757 -0.37632 0.57149 1.04750 1.29175 1.30711 1.48555 1.53316 2.13226 2.41139 2.46616 3.22679 3.62187 3.70844 4.02810 4.13951 4.19333 4.37229 4.41641 4.53199 4.59155 4.63270 4.88711 4.97142 5.05808 5.09159 5.14504 5.22479 5.30350 5.38046 5.41972 5.62681 5.82633 5.92758 6.36243 6.72953 7.01823 7.46065 7.56744 9.00106 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.017078 B = 0.008542 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.189067 B = 3277.153748 C = 4521.645939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.008 4.008 3 Si 0.946 3.054 4 H -0.277 1.277 5 H -0.275 1.275 6 H -0.286 1.286 7 C -0.498 4.498 8 H 0.078 0.922 9 C 0.021 3.979 10 C 0.142 3.858 11 H 0.047 0.953 12 C -0.122 4.122 13 C -0.110 4.110 14 C 0.078 3.922 15 N -0.611 5.611 16 C 0.575 3.425 17 O -0.541 6.541 18 C -0.292 4.292 19 C -0.079 4.079 20 C -0.158 4.158 21 C -0.240 4.240 22 S 0.256 5.744 23 H 0.255 0.745 24 H 0.006 0.994 25 H -0.009 1.009 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.132 0.868 33 H 0.165 0.835 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.333 -16.325 11.634 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.202 4.202 3 Si 0.774 3.226 4 H -0.202 1.202 5 H -0.201 1.201 6 H -0.213 1.213 7 C -0.536 4.536 8 H 0.096 0.904 9 C -0.017 4.017 10 C 0.039 3.961 11 H 0.065 0.935 12 C -0.161 4.161 13 C -0.148 4.148 14 C -0.045 4.045 15 N -0.345 5.345 16 C 0.364 3.636 17 O -0.419 6.419 18 C -0.412 4.412 19 C -0.113 4.113 20 C -0.188 4.188 21 C -0.377 4.377 22 S 0.524 5.476 23 H 0.064 0.936 24 H 0.024 0.976 25 H 0.009 0.991 26 H 0.114 0.886 27 H 0.091 0.909 28 H 0.107 0.893 29 H 0.137 0.863 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.150 0.850 33 H 0.183 0.817 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 5.528 -16.895 11.151 20.984 hybrid contribution 1.050 3.024 0.108 3.203 sum 6.578 -13.871 11.259 19.037 Atomic orbital electron populations 1.70098 1.07115 1.26591 1.54921 1.25725 0.95496 1.02413 0.96595 0.85658 0.79060 0.80587 0.77326 1.20179 1.20113 1.21281 1.22277 0.94727 0.91594 1.44992 0.90404 1.19385 0.93927 0.93305 0.95034 1.21734 0.95885 0.96679 0.81770 0.93477 1.22710 1.00086 0.92113 1.01142 1.22755 1.02980 0.96806 0.92265 1.22753 1.00950 0.82556 0.98242 1.48353 1.54936 1.16875 1.14339 1.17134 0.78881 0.82216 0.85382 1.90843 1.52766 1.30069 1.68265 1.24805 1.12203 1.06358 0.97828 1.20949 0.97160 0.98996 0.94241 1.20129 1.04508 0.98792 0.95351 1.26045 1.03716 1.01473 1.06448 1.82811 1.46158 1.22521 0.96109 0.93623 0.97631 0.99087 0.88599 0.90873 0.89338 0.86280 0.88702 0.90750 0.84975 0.81725 0.78047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.83 13.29 21.45 0.28 -61.54 16 2 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 3 Si 0.95 51.45 29.54 68.60 2.03 53.48 16 4 H -0.28 -15.22 7.11 99.48 0.71 -14.52 16 5 H -0.28 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.29 -15.29 7.11 99.48 0.71 -14.58 16 7 C -0.50 -31.17 7.10 25.60 0.18 -30.99 16 8 H 0.08 5.08 5.20 -2.91 -0.02 5.07 16 9 C 0.02 1.16 4.43 29.84 0.13 1.30 16 10 C 0.14 6.04 3.00 45.34 0.14 6.17 16 11 H 0.05 2.15 8.07 -2.39 -0.02 2.13 16 12 C -0.12 -3.57 6.44 31.78 0.20 -3.36 16 13 C -0.11 -2.27 7.09 31.99 0.23 -2.04 16 14 C 0.08 2.05 5.26 86.86 0.46 2.51 16 15 N -0.61 -24.17 3.07 -792.81 -2.43 -26.60 16 16 C 0.57 25.99 7.46 86.42 0.64 26.63 16 17 O -0.54 -30.06 12.79 -4.35 -0.06 -30.11 16 18 C -0.29 -10.38 6.34 24.08 0.15 -10.22 16 19 C -0.08 -2.59 10.02 21.71 0.22 -2.37 16 20 C -0.16 -3.70 10.15 21.08 0.21 -3.49 16 21 C -0.24 -4.64 10.92 66.81 0.73 -3.91 16 22 S 0.26 5.91 18.68 -56.49 -1.06 4.85 16 23 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 24 H 0.01 0.32 8.09 -2.39 -0.02 0.30 16 25 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 26 H 0.10 2.40 8.14 -2.39 -0.02 2.39 16 27 H 0.07 2.19 7.86 -2.39 -0.02 2.17 16 28 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.12 1.60 8.14 -2.39 -0.02 1.59 16 30 H 0.10 2.06 5.82 -9.95 -0.06 2.00 16 31 H 0.07 1.89 7.92 -2.39 -0.02 1.87 16 32 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 33 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 34 H 0.20 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -82.52 290.35 3.58 -78.94 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: 1.05 Total: 0.78 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 3.76 Total: -19.80 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -2.15 Total: -88.15 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.06 Total: -30.11 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.03 Total: 53.48 kcal Atomic # 16 Polarization: 5.91 SS G_CDS: -1.06 Total: 4.85 kcal Total: -82.52 3.58 -78.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084529384.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.872 kcal (2) G-P(sol) polarization free energy of solvation -82.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds