Wall clock time and date at job start Mon Mar 30 2020 06:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00232 * 2 1 4 4 H 1.48496 * 109.47453 * 239.99964 * 3 2 1 5 5 H 1.48500 * 109.47003 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46886 * 119.99910 * 3 2 1 7 7 C 1.37882 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99867 * 182.56039 * 7 2 1 9 9 C 1.50702 * 119.99898 * 2.83338 * 7 2 1 10 10 C 1.52996 * 115.54953 * 274.89400 * 9 7 2 11 11 S 1.81400 * 109.47362 * 300.27366 * 10 9 7 12 12 O 1.42096 * 109.47068 * 283.54585 * 11 10 9 13 13 C 1.76199 * 102.99885 * 174.48733 * 11 10 9 14 14 C 1.38315 * 119.96160 * 269.72820 * 13 11 10 15 15 C 1.38263 * 120.14816 * 179.72934 * 14 13 11 16 16 C 1.38128 * 120.07168 * 0.54537 * 15 14 13 17 17 C 1.38886 * 119.92859 * 359.73012 * 16 15 14 18 18 N 1.39673 * 120.07710 * 179.97438 * 17 16 15 19 19 C 1.38075 * 119.96456 * 90.00105 * 13 11 10 20 20 C 1.52999 * 117.49525 * 129.22588 * 9 7 2 21 21 C 1.52994 * 117.49811 * 60.56901 * 9 7 2 22 22 H 0.97003 * 119.99771 * 5.02382 * 1 2 3 23 23 H 1.09000 * 109.47042 * 60.27793 * 10 9 7 24 24 H 1.08999 * 109.46803 * 180.27347 * 10 9 7 25 25 H 1.07993 * 119.92329 * 359.97438 * 14 13 11 26 26 H 1.07991 * 119.96648 * 180.27271 * 15 14 13 27 27 H 1.08004 * 120.03681 * 179.75290 * 16 15 14 28 28 H 0.97008 * 119.99972 * 180.02562 * 18 17 16 29 29 H 0.96997 * 120.00311 * 0.02562 * 18 17 16 30 30 H 1.08003 * 120.03605 * 359.97438 * 19 13 11 31 31 H 1.08996 * 117.50475 * 0.02562 * 20 9 7 32 32 H 1.09007 * 117.49454 * 145.02065 * 20 9 7 33 33 H 1.09008 * 117.49807 * 214.98075 * 21 9 7 34 34 H 1.09003 * 117.50100 * 359.97251 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0836 -1.1946 0.0412 9 6 1.2523 -2.4984 -0.0656 10 6 0.7621 -3.0451 1.2766 11 16 2.1816 -3.3210 2.3719 12 8 2.8594 -4.5065 1.9793 13 6 1.4237 -3.7832 3.8940 14 6 1.0985 -2.8143 4.8259 15 6 0.4987 -3.1721 6.0192 16 6 0.2325 -4.5003 6.2891 17 6 0.5629 -5.4764 5.3579 18 7 0.2956 -6.8204 5.6278 19 6 1.1603 -5.1127 4.1574 20 6 1.6875 -3.5127 -1.1252 21 6 0.3731 -2.7463 -1.2930 22 1 -0.4850 0.8369 -0.0736 23 1 0.0832 -2.3264 1.7356 24 1 0.2388 -3.9876 1.1157 25 1 1.3101 -1.7756 4.6194 26 1 0.2420 -2.4127 6.7429 27 1 -0.2325 -4.7796 7.2230 28 1 0.5272 -7.5013 4.9767 29 1 -0.1217 -7.0731 6.4662 30 1 1.4182 -5.8692 3.4309 31 1 2.5181 -3.2369 -1.7749 32 1 1.6242 -4.5696 -0.8661 33 1 -0.5544 -3.2993 -1.1443 34 1 0.3384 -1.9659 -2.0532 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088063383.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:44 Heat of formation + Delta-G solvation = 7.698924 kcal Electronic energy + Delta-G solvation = -17530.843922 eV Core-core repulsion = 14748.705348 eV Total energy + Delta-G solvation = -2782.138574 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.98379 -36.51830 -34.87936 -34.34885 -31.98321 -30.72277 -28.41874 -27.61512 -25.36447 -22.73830 -21.94077 -21.05390 -19.29634 -17.77105 -16.74449 -16.39548 -15.98190 -15.56490 -14.68262 -14.31066 -14.11974 -14.09210 -13.51244 -13.42855 -13.02772 -12.92439 -12.15774 -11.68660 -11.52804 -11.31267 -11.08341 -10.94131 -10.75541 -10.58356 -10.47609 -10.16419 -9.83428 -9.36973 -8.87432 -8.85583 -8.47715 -8.15868 -7.47140 -7.28278 -6.07979 -4.20027 1.32431 1.79436 2.61508 3.30319 3.36100 3.38775 3.58541 3.90534 4.08746 4.37067 4.71334 5.10406 5.21003 5.21356 5.39449 5.61165 5.75761 5.90314 6.01595 6.03221 6.29555 6.43438 6.49505 6.61277 6.64535 6.73783 6.82739 6.89392 6.99165 7.14126 7.43689 7.52992 7.55474 7.75429 7.82522 8.34791 8.85455 9.49275 10.99693 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.023757 B = 0.006138 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.315413 B = 4560.347591 C = 5151.443623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.079 3.921 3 Si 0.886 3.114 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.060 3.940 10 C -0.377 4.377 11 S 1.332 4.668 12 O -0.873 6.873 13 C -0.407 4.407 14 C -0.101 4.101 15 C -0.092 4.092 16 C -0.177 4.177 17 C 0.192 3.808 18 N -0.884 5.884 19 C -0.134 4.134 20 C -0.214 4.214 21 C -0.148 4.148 22 H 0.263 0.737 23 H 0.117 0.883 24 H 0.054 0.946 25 H 0.135 0.865 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.396 0.604 29 H 0.394 0.606 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.288 -4.741 11.162 12.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.126 4.126 3 Si 0.713 3.287 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.547 4.547 8 H 0.085 0.915 9 C 0.058 3.942 10 C -0.516 4.516 11 S 1.531 4.469 12 O -0.869 6.869 13 C -0.502 4.502 14 C -0.122 4.122 15 C -0.112 4.112 16 C -0.200 4.200 17 C 0.088 3.912 18 N -0.424 5.424 19 C -0.158 4.158 20 C -0.251 4.251 21 C -0.187 4.187 22 H 0.072 0.928 23 H 0.135 0.865 24 H 0.073 0.927 25 H 0.153 0.847 26 H 0.141 0.859 27 H 0.134 0.866 28 H 0.224 0.776 29 H 0.222 0.778 30 H 0.138 0.862 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.528 -4.518 11.073 11.971 hybrid contribution -1.353 -1.417 -0.129 1.963 sum -0.825 -5.934 10.944 12.477 Atomic orbital electron populations 1.70008 1.05992 1.27115 1.47681 1.24974 0.94747 0.98877 0.93995 0.86748 0.79810 0.82966 0.79168 1.20189 1.21294 1.19381 1.20463 0.92657 0.88425 1.53197 0.91458 1.18295 0.98393 0.93416 0.84122 1.27141 1.12389 1.03694 1.08353 1.70158 0.87665 1.06710 0.82323 1.92926 1.63095 1.50035 1.80808 1.28222 1.07715 0.97273 1.16958 1.20709 0.99318 0.98963 0.93217 1.20989 0.97845 0.95172 0.97179 1.20630 1.07002 0.93015 0.99351 1.17895 0.94646 0.84723 0.93921 1.42415 1.71908 1.04547 1.23548 1.20592 1.02177 0.96439 0.96543 1.23097 0.99235 0.95871 1.06939 1.22525 0.91568 1.01162 1.03484 0.92760 0.86454 0.92708 0.84727 0.85886 0.86621 0.77585 0.77828 0.86154 0.90102 0.91746 0.92184 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.91 12.82 55.43 0.71 -22.20 16 2 C 0.08 1.97 5.41 -17.82 -0.10 1.88 16 3 Si 0.89 19.18 29.54 -169.99 -5.02 14.16 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.51 -12.73 8.30 -34.44 -0.29 -13.02 16 8 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.06 1.44 1.42 -155.66 -0.22 1.22 16 10 C -0.38 -8.26 5.77 37.16 0.21 -8.04 16 11 S 1.33 25.88 13.06 -107.50 -1.40 24.47 16 12 O -0.87 -20.63 16.90 -35.23 -0.60 -21.22 16 13 C -0.41 -7.13 5.61 -39.61 -0.22 -7.36 16 14 C -0.10 -1.51 9.75 -39.54 -0.39 -1.90 16 15 C -0.09 -1.22 10.04 -39.61 -0.40 -1.62 16 16 C -0.18 -2.35 9.90 -39.38 -0.39 -2.74 16 17 C 0.19 2.83 6.75 -83.79 -0.57 2.26 16 18 N -0.88 -9.83 9.09 32.41 0.29 -9.53 16 19 C -0.13 -2.36 9.29 -39.38 -0.37 -2.72 16 20 C -0.21 -4.98 9.95 -26.70 -0.27 -5.24 16 21 C -0.15 -3.55 9.35 -26.70 -0.25 -3.80 16 22 H 0.26 6.62 8.32 -40.82 -0.34 6.28 16 23 H 0.12 2.60 8.14 -51.92 -0.42 2.18 16 24 H 0.05 1.20 8.11 -51.92 -0.42 0.78 16 25 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 26 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 27 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 28 H 0.40 4.03 8.84 -40.82 -0.36 3.67 16 29 H 0.39 3.31 8.84 -40.82 -0.36 2.94 16 30 H 0.12 2.25 7.45 -52.48 -0.39 1.86 16 31 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 32 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.06 1.38 8.14 -51.92 -0.42 0.95 16 34 H 0.08 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 308.52 15.07 4.65 4.65 Total: -1.00 -31.46 308.52 -9.06 -40.52 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -4.46 Total: 10.25 kcal Atomic # 6 Polarization: -37.85 SS G_CDS: -3.23 Total: -41.09 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 1.01 Total: -31.74 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.60 Total: -21.22 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Atomic # 16 Polarization: 25.88 SS G_CDS: -1.40 Total: 24.47 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.46 -9.06 -40.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088063383.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.214 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds