Wall clock time and date at job start Mon Mar 30 2020 06:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00232 * 2 1 4 4 H 1.48496 * 109.47453 * 239.99964 * 3 2 1 5 5 H 1.48500 * 109.47003 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46886 * 119.99910 * 3 2 1 7 7 C 1.37882 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99867 * 182.56039 * 7 2 1 9 9 C 1.50702 * 119.99898 * 2.83338 * 7 2 1 10 10 C 1.52996 * 115.54953 * 274.89400 * 9 7 2 11 11 S 1.81400 * 109.47362 * 300.27366 * 10 9 7 12 12 O 1.42096 * 109.47068 * 283.54585 * 11 10 9 13 13 C 1.76199 * 102.99885 * 174.48733 * 11 10 9 14 14 C 1.38315 * 119.96160 * 269.72820 * 13 11 10 15 15 C 1.38263 * 120.14816 * 179.72934 * 14 13 11 16 16 C 1.38128 * 120.07168 * 0.54537 * 15 14 13 17 17 C 1.38886 * 119.92859 * 359.73012 * 16 15 14 18 18 N 1.39673 * 120.07710 * 179.97438 * 17 16 15 19 19 C 1.38075 * 119.96456 * 90.00105 * 13 11 10 20 20 C 1.52999 * 117.49525 * 129.22588 * 9 7 2 21 21 C 1.52994 * 117.49811 * 60.56901 * 9 7 2 22 22 H 0.97003 * 119.99771 * 5.02382 * 1 2 3 23 23 H 1.09000 * 109.47042 * 60.27793 * 10 9 7 24 24 H 1.08999 * 109.46803 * 180.27347 * 10 9 7 25 25 H 1.07993 * 119.92329 * 359.97438 * 14 13 11 26 26 H 1.07991 * 119.96648 * 180.27271 * 15 14 13 27 27 H 1.08004 * 120.03681 * 179.75290 * 16 15 14 28 28 H 0.97008 * 119.99972 * 180.02562 * 18 17 16 29 29 H 0.96997 * 120.00311 * 0.02562 * 18 17 16 30 30 H 1.08003 * 120.03605 * 359.97438 * 19 13 11 31 31 H 1.08996 * 117.50475 * 0.02562 * 20 9 7 32 32 H 1.09007 * 117.49454 * 145.02065 * 20 9 7 33 33 H 1.09008 * 117.49807 * 214.98075 * 21 9 7 34 34 H 1.09003 * 117.50100 * 359.97251 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0836 -1.1946 0.0412 9 6 1.2523 -2.4984 -0.0656 10 6 0.7621 -3.0451 1.2766 11 16 2.1816 -3.3210 2.3719 12 8 2.8594 -4.5065 1.9793 13 6 1.4237 -3.7832 3.8940 14 6 1.0985 -2.8143 4.8259 15 6 0.4987 -3.1721 6.0192 16 6 0.2325 -4.5003 6.2891 17 6 0.5629 -5.4764 5.3579 18 7 0.2956 -6.8204 5.6278 19 6 1.1603 -5.1127 4.1574 20 6 1.6875 -3.5127 -1.1252 21 6 0.3731 -2.7463 -1.2930 22 1 -0.4850 0.8369 -0.0736 23 1 0.0832 -2.3264 1.7356 24 1 0.2388 -3.9876 1.1157 25 1 1.3101 -1.7756 4.6194 26 1 0.2420 -2.4127 6.7429 27 1 -0.2325 -4.7796 7.2230 28 1 0.5272 -7.5013 4.9767 29 1 -0.1217 -7.0731 6.4662 30 1 1.4182 -5.8692 3.4309 31 1 2.5181 -3.2369 -1.7749 32 1 1.6242 -4.5696 -0.8661 33 1 -0.5544 -3.2993 -1.1443 34 1 0.3384 -1.9659 -2.0532 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088063383.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:44 Heat of formation + Delta-G solvation = -12.820704 kcal Electronic energy + Delta-G solvation = -17531.733720 eV Core-core repulsion = 14748.705348 eV Total energy + Delta-G solvation = -2783.028372 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.10697 -38.40523 -36.61565 -35.38673 -33.91692 -31.89404 -29.55547 -29.36669 -27.29257 -23.93348 -23.07695 -22.97148 -21.14791 -19.09461 -18.03387 -17.74513 -17.63463 -16.74120 -16.52097 -15.87694 -15.70471 -15.45223 -15.03006 -14.76991 -14.50839 -14.15882 -13.89363 -13.46211 -13.12769 -12.83042 -12.63914 -12.52653 -12.29944 -12.24030 -12.01408 -11.68771 -11.58600 -11.08924 -10.75834 -10.38977 -10.06451 -9.95592 -8.99616 -8.48596 -7.99291 -6.17279 0.06750 0.65501 1.13417 1.61575 1.62588 1.69361 2.09454 2.56838 2.83517 2.97135 3.15055 3.30601 3.48700 3.98851 4.16653 4.19453 4.43551 4.51037 4.61045 4.64744 4.75076 4.83707 4.91901 4.94084 5.02317 5.21385 5.29892 5.50230 5.55960 5.58648 5.59522 5.88666 5.95141 6.42692 6.51638 6.91667 6.94054 7.55065 9.08574 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.023757 B = 0.006138 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.315413 B = 4560.347591 C = 5151.443623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.041 3.959 3 Si 0.945 3.055 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.249 1.249 7 C -0.521 4.521 8 H 0.071 0.929 9 C 0.045 3.955 10 C -0.377 4.377 11 S 1.371 4.629 12 O -0.920 6.920 13 C -0.426 4.426 14 C -0.110 4.110 15 C -0.086 4.086 16 C -0.171 4.171 17 C 0.189 3.811 18 N -0.873 5.873 19 C -0.169 4.169 20 C -0.209 4.209 21 C -0.153 4.153 22 H 0.263 0.737 23 H 0.112 0.888 24 H 0.042 0.958 25 H 0.156 0.844 26 H 0.163 0.837 27 H 0.152 0.848 28 H 0.400 0.600 29 H 0.410 0.590 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.390 -3.869 13.778 14.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.161 4.161 3 Si 0.769 3.231 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.172 1.172 7 C -0.558 4.558 8 H 0.089 0.911 9 C 0.043 3.957 10 C -0.515 4.515 11 S 1.573 4.427 12 O -0.916 6.916 13 C -0.524 4.524 14 C -0.131 4.131 15 C -0.105 4.105 16 C -0.194 4.194 17 C 0.083 3.917 18 N -0.414 5.414 19 C -0.193 4.193 20 C -0.246 4.246 21 C -0.192 4.192 22 H 0.072 0.928 23 H 0.130 0.870 24 H 0.061 0.939 25 H 0.174 0.826 26 H 0.180 0.820 27 H 0.170 0.830 28 H 0.228 0.772 29 H 0.240 0.760 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.433 -3.673 13.666 14.158 hybrid contribution -1.401 -1.772 -0.798 2.395 sum -0.969 -5.444 12.869 14.007 Atomic orbital electron populations 1.70119 1.07338 1.27814 1.48546 1.25615 0.95354 1.01710 0.93448 0.85818 0.78659 0.78918 0.79671 1.20581 1.21498 1.17233 1.20678 0.92931 0.88941 1.53280 0.91123 1.18527 0.98368 0.93737 0.85056 1.27115 1.13508 1.02649 1.08260 1.69491 0.85949 1.05369 0.81896 1.92831 1.64658 1.52034 1.82122 1.27777 1.10097 0.98242 1.16246 1.21072 0.99122 0.99444 0.93467 1.21470 0.95942 0.96233 0.96854 1.21116 1.05586 0.92680 0.99997 1.18016 0.93958 0.86508 0.93192 1.42391 1.71192 1.03445 1.24344 1.20522 1.04846 0.96046 0.97899 1.23075 0.98935 0.95758 1.06818 1.22450 0.92033 1.01112 1.03626 0.92828 0.86979 0.93940 0.82592 0.81973 0.83027 0.77181 0.75952 0.88756 0.89665 0.91770 0.91862 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.50 12.82 21.45 0.28 -47.22 16 2 C 0.04 2.03 5.41 84.66 0.46 2.49 16 3 Si 0.94 38.60 29.54 68.60 2.03 40.62 16 4 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.29 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 7 C -0.52 -26.05 8.30 25.60 0.21 -25.84 16 8 H 0.07 3.41 7.81 -2.91 -0.02 3.39 16 9 C 0.04 2.20 1.42 -52.93 -0.08 2.13 16 10 C -0.38 -16.99 5.77 71.98 0.42 -16.57 16 11 S 1.37 54.28 13.06 -56.49 -0.74 53.54 16 12 O -0.92 -44.97 16.90 -148.98 -2.52 -47.49 16 13 C -0.43 -14.83 5.61 22.25 0.12 -14.70 16 14 C -0.11 -3.05 9.75 22.29 0.22 -2.83 16 15 C -0.09 -1.93 10.04 22.25 0.22 -1.70 16 16 C -0.17 -3.88 9.90 22.40 0.22 -3.66 16 17 C 0.19 5.22 6.75 38.21 0.26 5.47 16 18 N -0.87 -17.70 9.09 -51.37 -0.47 -18.16 16 19 C -0.17 -5.97 9.29 22.40 0.21 -5.77 16 20 C -0.21 -9.91 9.95 30.62 0.30 -9.61 16 21 C -0.15 -7.52 9.35 30.62 0.29 -7.24 16 22 H 0.26 13.24 8.32 -92.71 -0.77 12.47 16 23 H 0.11 5.08 8.14 -2.39 -0.02 5.06 16 24 H 0.04 1.94 8.11 -2.39 -0.02 1.92 16 25 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 26 H 0.16 2.40 8.06 -2.92 -0.02 2.37 16 27 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 28 H 0.40 7.74 8.84 -92.70 -0.82 6.92 16 29 H 0.41 5.65 8.84 -92.71 -0.82 4.83 16 30 H 0.09 3.73 7.45 -2.91 -0.02 3.71 16 31 H 0.08 3.91 8.14 -2.39 -0.02 3.89 16 32 H 0.06 3.01 8.14 -2.38 -0.02 2.99 16 33 H 0.06 2.99 8.14 -2.38 -0.02 2.97 16 34 H 0.07 3.61 8.14 -2.39 -0.02 3.59 16 Total: -1.00 -68.09 308.52 0.91 -67.18 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: -0.52 Total: 29.36 kcal Atomic # 6 Polarization: -80.68 SS G_CDS: 2.85 Total: -77.83 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -0.19 Total: -65.38 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -2.52 Total: -47.49 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.62 kcal Atomic # 16 Polarization: 54.28 SS G_CDS: -0.74 Total: 53.54 kcal Total: -68.09 0.91 -67.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088063383.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.359 kcal (2) G-P(sol) polarization free energy of solvation -68.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds