Wall clock time and date at job start Mon Mar 30 2020 06:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99749 * 2 1 4 4 H 1.48491 * 109.47452 * 269.99943 * 3 2 1 5 5 H 1.48505 * 109.46941 * 30.00544 * 3 2 1 6 6 H 1.48509 * 109.46921 * 149.99680 * 3 2 1 7 7 C 1.37875 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99993 * 175.44209 * 7 2 1 9 9 C 1.50703 * 119.99822 * 355.71701 * 7 2 1 10 10 C 1.52994 * 115.54852 * 279.30030 * 9 7 2 11 11 S 1.81401 * 109.47326 * 295.90771 * 10 9 7 12 12 O 1.42105 * 109.46489 * 76.07758 * 11 10 9 13 13 C 1.76196 * 102.99881 * 185.13181 * 11 10 9 14 14 C 1.38313 * 119.96503 * 269.72874 * 13 11 10 15 15 C 1.38260 * 120.15255 * 179.72872 * 14 13 11 16 16 C 1.38129 * 120.07170 * 0.54758 * 15 14 13 17 17 C 1.38889 * 119.92628 * 359.72693 * 16 15 14 18 18 N 1.39680 * 120.07744 * 179.97438 * 17 16 15 19 19 C 1.38082 * 119.96462 * 90.00389 * 13 11 10 20 20 C 1.53001 * 117.49620 * 133.59392 * 9 7 2 21 21 C 1.52998 * 60.00016 * 252.51507 * 20 9 7 22 22 H 0.96999 * 119.99921 * 5.01789 * 1 2 3 23 23 H 1.08997 * 109.47437 * 55.91564 * 10 9 7 24 24 H 1.08999 * 109.46791 * 175.91235 * 10 9 7 25 25 H 1.08000 * 119.92260 * 359.97438 * 14 13 11 26 26 H 1.07997 * 119.96972 * 180.27764 * 15 14 13 27 27 H 1.08001 * 120.03685 * 179.75164 * 16 15 14 28 28 H 0.96993 * 119.99863 * 180.02562 * 18 17 16 29 29 H 0.96992 * 119.99664 * 0.02562 * 18 17 16 30 30 H 1.08007 * 120.03100 * 359.97438 * 19 13 11 31 31 H 1.09004 * 117.49708 * 359.97438 * 20 9 7 32 32 H 1.08998 * 117.50139 * 145.02236 * 20 9 7 33 33 H 1.09007 * 117.49666 * 252.51294 * 21 20 9 34 34 H 1.08991 * 117.52508 * 107.48765 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7002 7 6 2.0046 -1.1940 -0.0005 8 1 3.0820 -1.1954 -0.0749 9 6 1.2542 -2.4974 0.0964 10 6 0.8209 -2.9061 1.5056 11 16 2.2898 -3.1976 2.5292 12 8 2.8587 -1.9514 2.9070 13 6 1.6079 -3.7962 4.0396 14 6 1.2794 -2.9092 5.0487 15 6 0.7389 -3.3741 6.2333 16 6 0.5355 -4.7279 6.4171 17 6 0.8695 -5.6219 5.4080 18 7 0.6657 -6.9917 5.5907 19 6 1.4072 -5.1508 4.2167 20 6 1.6483 -3.6131 -0.8736 21 6 0.3265 -2.8662 -1.0630 22 1 -0.4850 0.8368 -0.0735 23 1 0.2225 -2.1092 1.9472 24 1 0.2278 -3.8191 1.4528 25 1 1.4419 -1.8506 4.9095 26 1 0.4793 -2.6784 7.0176 27 1 0.1170 -5.0908 7.3442 28 1 0.8997 -7.6150 4.8854 29 1 0.2903 -7.3194 6.4228 30 1 1.6677 -5.8433 3.4299 31 1 2.4499 -3.4042 -1.5820 32 1 1.5989 -4.6387 -0.5078 33 1 -0.5925 -3.4004 -0.8218 34 1 0.2584 -2.1661 -1.8956 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088063384.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:46 Heat of formation + Delta-G solvation = 11.316255 kcal Electronic energy + Delta-G solvation = -17563.999673 eV Core-core repulsion = 14782.017958 eV Total energy + Delta-G solvation = -2781.981715 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.00691 -36.50690 -34.80331 -34.26033 -31.87459 -30.78456 -28.40915 -27.57309 -25.24524 -22.77724 -21.93151 -21.09251 -19.23455 -17.76389 -16.82509 -16.34729 -15.90274 -15.52847 -14.59949 -14.32734 -14.14387 -14.02222 -13.47031 -13.41084 -12.92513 -12.86314 -12.36590 -11.69093 -11.39461 -11.20763 -10.90085 -10.88310 -10.73315 -10.58709 -10.40647 -10.18469 -9.70389 -9.28741 -8.87039 -8.86329 -8.40783 -8.18044 -7.49207 -7.27417 -5.96824 -4.05058 1.30521 1.77433 2.64455 3.36900 3.44128 3.54084 3.62169 3.87282 4.08852 4.50246 4.79725 5.07081 5.17849 5.33372 5.36330 5.64657 5.67038 5.89977 5.99740 6.06895 6.27452 6.37235 6.46723 6.58161 6.65907 6.73446 6.74759 6.92281 6.97064 7.15644 7.48865 7.52801 7.57507 7.72170 7.95566 8.40499 8.96970 9.63957 11.10854 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.025612 B = 0.006088 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.971481 B = 4598.189838 C = 5169.153904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.077 3.923 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.498 4.498 8 H 0.063 0.937 9 C 0.058 3.942 10 C -0.383 4.383 11 S 1.314 4.686 12 O -0.837 6.837 13 C -0.409 4.409 14 C -0.111 4.111 15 C -0.091 4.091 16 C -0.177 4.177 17 C 0.192 3.808 18 N -0.883 5.883 19 C -0.125 4.125 20 C -0.214 4.214 21 C -0.150 4.150 22 H 0.259 0.741 23 H 0.090 0.910 24 H 0.081 0.919 25 H 0.124 0.876 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.397 0.603 29 H 0.394 0.606 30 H 0.130 0.870 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.976 -14.899 8.291 17.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.536 4.536 8 H 0.081 0.919 9 C 0.056 3.944 10 C -0.521 4.521 11 S 1.511 4.489 12 O -0.832 6.832 13 C -0.503 4.503 14 C -0.132 4.132 15 C -0.111 4.111 16 C -0.199 4.199 17 C 0.088 3.912 18 N -0.424 5.424 19 C -0.149 4.149 20 C -0.252 4.252 21 C -0.189 4.189 22 H 0.068 0.932 23 H 0.109 0.891 24 H 0.099 0.901 25 H 0.142 0.858 26 H 0.136 0.864 27 H 0.134 0.866 28 H 0.225 0.775 29 H 0.222 0.778 30 H 0.148 0.852 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.786 -14.561 8.204 16.809 hybrid contribution -1.474 2.015 1.166 2.755 sum 0.312 -12.546 9.370 15.662 Atomic orbital electron populations 1.70001 1.05966 1.26654 1.49040 1.24921 0.94732 0.99046 0.93976 0.86639 0.80639 0.83405 0.77809 1.20748 1.21319 1.19259 1.20458 0.92772 0.88691 1.51668 0.91882 1.18275 0.98698 0.92798 0.84601 1.27180 1.13193 1.04759 1.07002 1.69241 0.90585 1.03865 0.85187 1.93091 1.66751 1.45014 1.78358 1.28354 1.06932 0.98776 1.16226 1.20989 0.98738 0.99971 0.93476 1.20972 0.98033 0.94771 0.97351 1.20616 1.07239 0.93318 0.98766 1.17848 0.94897 0.84282 0.94196 1.42376 1.74625 1.03956 1.21414 1.20244 1.03760 0.94390 0.96514 1.23120 0.99950 0.95764 1.06327 1.22515 0.91244 1.01827 1.03300 0.93167 0.89122 0.90069 0.85834 0.86415 0.86638 0.77479 0.77832 0.85230 0.90044 0.90969 0.91941 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.98 12.86 55.43 0.71 -25.27 16 2 C 0.08 2.21 5.44 -17.82 -0.10 2.12 16 3 Si 0.89 22.81 29.54 -169.99 -5.02 17.79 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.50 -13.88 8.10 -34.44 -0.28 -14.15 16 8 H 0.06 1.77 7.82 -52.49 -0.41 1.36 16 9 C 0.06 1.39 1.35 -155.66 -0.21 1.18 16 10 C -0.38 -8.30 5.74 37.15 0.21 -8.08 16 11 S 1.31 24.70 13.26 -107.50 -1.43 23.27 16 12 O -0.84 -21.08 16.51 -35.23 -0.58 -21.66 16 13 C -0.41 -6.97 5.61 -39.61 -0.22 -7.19 16 14 C -0.11 -2.02 9.44 -39.55 -0.37 -2.40 16 15 C -0.09 -1.38 10.04 -39.61 -0.40 -1.78 16 16 C -0.18 -2.31 9.90 -39.38 -0.39 -2.70 16 17 C 0.19 2.40 6.75 -83.78 -0.57 1.83 16 18 N -0.88 -7.45 9.09 32.41 0.29 -7.15 16 19 C -0.13 -1.71 9.60 -39.38 -0.38 -2.08 16 20 C -0.21 -4.24 9.96 -26.73 -0.27 -4.51 16 21 C -0.15 -3.41 9.41 -26.73 -0.25 -3.66 16 22 H 0.26 7.34 8.32 -40.82 -0.34 7.00 16 23 H 0.09 2.33 8.14 -51.93 -0.42 1.90 16 24 H 0.08 1.49 8.10 -51.92 -0.42 1.07 16 25 H 0.12 2.52 7.44 -52.49 -0.39 2.13 16 26 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 27 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.40 2.56 8.84 -40.82 -0.36 2.19 16 29 H 0.39 2.56 8.84 -40.82 -0.36 2.20 16 30 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 31 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 LS Contribution 308.17 15.07 4.64 4.64 Total: -1.00 -35.90 308.17 -9.06 -44.95 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -4.46 Total: 4.86 kcal Atomic # 6 Polarization: -38.22 SS G_CDS: -3.22 Total: -41.44 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 1.01 Total: -32.42 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.58 Total: -21.66 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Atomic # 16 Polarization: 24.70 SS G_CDS: -1.43 Total: 23.27 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.90 -9.06 -44.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088063384.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.271 kcal (2) G-P(sol) polarization free energy of solvation -35.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds