Wall clock time and date at job start Mon Mar 30 2020 06:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99749 * 2 1 4 4 H 1.48491 * 109.47452 * 269.99943 * 3 2 1 5 5 H 1.48505 * 109.46941 * 30.00544 * 3 2 1 6 6 H 1.48509 * 109.46921 * 149.99680 * 3 2 1 7 7 C 1.37875 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99993 * 175.44209 * 7 2 1 9 9 C 1.50703 * 119.99822 * 355.71701 * 7 2 1 10 10 C 1.52994 * 115.54852 * 279.30030 * 9 7 2 11 11 S 1.81401 * 109.47326 * 295.90771 * 10 9 7 12 12 O 1.42105 * 109.46489 * 76.07758 * 11 10 9 13 13 C 1.76196 * 102.99881 * 185.13181 * 11 10 9 14 14 C 1.38313 * 119.96503 * 269.72874 * 13 11 10 15 15 C 1.38260 * 120.15255 * 179.72872 * 14 13 11 16 16 C 1.38129 * 120.07170 * 0.54758 * 15 14 13 17 17 C 1.38889 * 119.92628 * 359.72693 * 16 15 14 18 18 N 1.39680 * 120.07744 * 179.97438 * 17 16 15 19 19 C 1.38082 * 119.96462 * 90.00389 * 13 11 10 20 20 C 1.53001 * 117.49620 * 133.59392 * 9 7 2 21 21 C 1.52998 * 60.00016 * 252.51507 * 20 9 7 22 22 H 0.96999 * 119.99921 * 5.01789 * 1 2 3 23 23 H 1.08997 * 109.47437 * 55.91564 * 10 9 7 24 24 H 1.08999 * 109.46791 * 175.91235 * 10 9 7 25 25 H 1.08000 * 119.92260 * 359.97438 * 14 13 11 26 26 H 1.07997 * 119.96972 * 180.27764 * 15 14 13 27 27 H 1.08001 * 120.03685 * 179.75164 * 16 15 14 28 28 H 0.96993 * 119.99863 * 180.02562 * 18 17 16 29 29 H 0.96992 * 119.99664 * 0.02562 * 18 17 16 30 30 H 1.08007 * 120.03100 * 359.97438 * 19 13 11 31 31 H 1.09004 * 117.49708 * 359.97438 * 20 9 7 32 32 H 1.08998 * 117.50139 * 145.02236 * 20 9 7 33 33 H 1.09007 * 117.49666 * 252.51294 * 21 20 9 34 34 H 1.08991 * 117.52508 * 107.48765 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7002 7 6 2.0046 -1.1940 -0.0005 8 1 3.0820 -1.1954 -0.0749 9 6 1.2542 -2.4974 0.0964 10 6 0.8209 -2.9061 1.5056 11 16 2.2898 -3.1976 2.5292 12 8 2.8587 -1.9514 2.9070 13 6 1.6079 -3.7962 4.0396 14 6 1.2794 -2.9092 5.0487 15 6 0.7389 -3.3741 6.2333 16 6 0.5355 -4.7279 6.4171 17 6 0.8695 -5.6219 5.4080 18 7 0.6657 -6.9917 5.5907 19 6 1.4072 -5.1508 4.2167 20 6 1.6483 -3.6131 -0.8736 21 6 0.3265 -2.8662 -1.0630 22 1 -0.4850 0.8368 -0.0735 23 1 0.2225 -2.1092 1.9472 24 1 0.2278 -3.8191 1.4528 25 1 1.4419 -1.8506 4.9095 26 1 0.4793 -2.6784 7.0176 27 1 0.1170 -5.0908 7.3442 28 1 0.8997 -7.6150 4.8854 29 1 0.2903 -7.3194 6.4228 30 1 1.6677 -5.8433 3.4299 31 1 2.4499 -3.4042 -1.5820 32 1 1.5989 -4.6387 -0.5078 33 1 -0.5925 -3.4004 -0.8218 34 1 0.2584 -2.1661 -1.8956 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088063384.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:45 Heat of formation + Delta-G solvation = -14.869146 kcal Electronic energy + Delta-G solvation = -17565.135157 eV Core-core repulsion = 14782.017958 eV Total energy + Delta-G solvation = -2783.117199 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.09039 -38.30279 -36.52707 -35.28856 -34.01421 -31.92934 -29.46169 -29.26670 -27.36560 -23.92913 -23.05023 -22.78292 -21.11226 -19.06229 -18.11937 -17.70547 -17.40697 -16.74388 -16.69068 -15.84050 -15.65034 -15.26601 -15.09375 -14.65667 -14.39987 -14.13581 -14.06958 -13.60870 -13.00186 -12.92671 -12.78213 -12.50281 -12.41180 -12.31015 -11.88747 -11.65534 -11.48057 -11.06281 -10.85562 -10.40513 -10.05355 -9.92220 -8.98799 -8.40353 -8.15340 -6.25173 0.09536 0.61892 1.21316 1.27185 1.32073 1.42989 2.17714 2.37160 2.87876 3.06831 3.14762 3.29542 3.59801 4.01211 4.21945 4.36711 4.37908 4.54163 4.64921 4.79716 4.80851 4.82075 4.98087 5.13521 5.16960 5.29539 5.40409 5.45827 5.57178 5.65563 5.78871 5.86838 5.89309 6.35176 6.66030 6.83325 7.13039 7.44584 8.91790 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.025612 B = 0.006088 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.971481 B = 4598.189838 C = 5169.153904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.930 3.070 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.503 4.503 8 H 0.051 0.949 9 C 0.016 3.984 10 C -0.381 4.381 11 S 1.380 4.620 12 O -0.913 6.913 13 C -0.423 4.423 14 C -0.156 4.156 15 C -0.097 4.097 16 C -0.174 4.174 17 C 0.202 3.798 18 N -0.862 5.862 19 C -0.123 4.123 20 C -0.171 4.171 21 C -0.163 4.163 22 H 0.256 0.744 23 H 0.037 0.963 24 H 0.119 0.881 25 H 0.079 0.921 26 H 0.131 0.869 27 H 0.150 0.850 28 H 0.412 0.588 29 H 0.408 0.592 30 H 0.173 0.827 31 H 0.084 0.916 32 H 0.126 0.874 33 H 0.077 0.923 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.912 -19.114 9.102 21.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.175 4.175 3 Si 0.756 3.244 4 H -0.187 1.187 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.015 3.985 10 C -0.519 4.519 11 S 1.580 4.420 12 O -0.909 6.909 13 C -0.521 4.521 14 C -0.178 4.178 15 C -0.117 4.117 16 C -0.197 4.197 17 C 0.095 3.905 18 N -0.403 5.403 19 C -0.146 4.146 20 C -0.208 4.208 21 C -0.202 4.202 22 H 0.065 0.935 23 H 0.056 0.944 24 H 0.137 0.863 25 H 0.098 0.902 26 H 0.149 0.851 27 H 0.167 0.833 28 H 0.242 0.758 29 H 0.238 0.762 30 H 0.190 0.810 31 H 0.102 0.898 32 H 0.144 0.856 33 H 0.095 0.905 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.731 -18.803 8.966 20.903 hybrid contribution -1.480 3.123 1.068 3.618 sum 0.251 -15.680 10.034 18.617 Atomic orbital electron populations 1.70086 1.06786 1.26790 1.51032 1.25563 0.95479 1.01700 0.94726 0.85977 0.78970 0.80925 0.78512 1.18695 1.21545 1.20488 1.20827 0.92550 0.90918 1.49793 0.93121 1.18353 1.00470 0.93374 0.86351 1.27124 1.14214 1.04408 1.06152 1.68034 0.88149 1.00823 0.85006 1.92960 1.69267 1.48001 1.80633 1.27850 1.09237 1.00419 1.14564 1.20849 1.02515 0.98295 0.96143 1.21124 0.97569 0.96505 0.96453 1.20981 1.06208 0.92265 1.00261 1.17944 0.93171 0.86032 0.93337 1.42345 1.73081 1.02290 1.22560 1.20649 1.02553 0.93155 0.98263 1.23245 0.97473 0.96951 1.03082 1.22444 0.93409 1.02540 1.01813 0.93524 0.94398 0.86295 0.90218 0.85101 0.83276 0.75783 0.76201 0.80954 0.89772 0.85614 0.90467 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.98 12.86 21.45 0.28 -55.70 16 2 C 0.03 1.50 5.44 84.65 0.46 1.96 16 3 Si 0.93 48.58 29.54 68.60 2.03 50.61 16 4 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.29 -15.07 7.11 99.48 0.71 -14.37 16 6 H -0.28 -14.98 7.11 99.48 0.71 -14.27 16 7 C -0.50 -28.85 8.10 25.60 0.21 -28.65 16 8 H 0.05 2.94 7.82 -2.91 -0.02 2.91 16 9 C 0.02 0.77 1.35 -52.93 -0.07 0.70 16 10 C -0.38 -16.57 5.74 71.98 0.41 -16.16 16 11 S 1.38 52.08 13.26 -56.49 -0.75 51.33 16 12 O -0.91 -48.58 16.51 -148.98 -2.46 -51.04 16 13 C -0.42 -14.15 5.61 22.25 0.12 -14.03 16 14 C -0.16 -5.94 9.44 22.29 0.21 -5.73 16 15 C -0.10 -2.86 10.04 22.25 0.22 -2.63 16 16 C -0.17 -3.95 9.90 22.40 0.22 -3.73 16 17 C 0.20 4.14 6.75 38.21 0.26 4.40 16 18 N -0.86 -9.53 9.09 -51.37 -0.47 -9.99 16 19 C -0.12 -2.87 9.60 22.40 0.22 -2.65 16 20 C -0.17 -6.26 9.96 30.59 0.30 -5.95 16 21 C -0.16 -7.32 9.41 30.59 0.29 -7.03 16 22 H 0.26 15.19 8.32 -92.71 -0.77 14.42 16 23 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.12 4.09 8.10 -2.39 -0.02 4.07 16 25 H 0.08 3.62 7.44 -2.91 -0.02 3.60 16 26 H 0.13 3.33 8.06 -2.91 -0.02 3.31 16 27 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.41 2.72 8.84 -92.71 -0.82 1.90 16 29 H 0.41 2.88 8.84 -92.71 -0.82 2.06 16 30 H 0.17 2.44 8.06 -2.91 -0.02 2.41 16 31 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.08 3.18 8.14 -2.38 -0.02 3.16 16 34 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -84.87 308.17 0.96 -83.91 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -0.52 Total: 10.39 kcal Atomic # 6 Polarization: -82.36 SS G_CDS: 2.86 Total: -79.50 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -0.19 Total: -65.70 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -2.46 Total: -51.04 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.61 kcal Atomic # 16 Polarization: 52.08 SS G_CDS: -0.75 Total: 51.33 kcal Total: -84.87 0.96 -83.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088063384.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.038 kcal (2) G-P(sol) polarization free energy of solvation -84.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds