Wall clock time and date at job start Mon Mar 30 2020 06:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30609 * 1 3 3 Si 1.86796 * 119.99993 * 2 1 4 4 H 1.48497 * 109.47197 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47124 * 299.99664 * 3 2 1 6 6 H 1.48499 * 109.47451 * 59.99500 * 3 2 1 7 7 C 1.40180 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99908 * 180.02562 * 7 2 1 9 9 C 1.41751 * 119.99962 * 0.02562 * 7 2 1 10 10 O 1.21723 * 120.00076 * 5.17879 * 9 7 2 11 11 N 1.34781 * 119.99934 * 185.45402 * 9 7 2 12 12 C 1.38582 * 124.88561 * 84.58828 * 11 9 7 13 13 C 1.39150 * 132.30828 * 0.75928 * 12 11 9 14 14 C 1.37900 * 120.03681 * 179.55569 * 13 12 11 15 15 C 1.38590 * 120.55576 * 359.71207 * 14 13 12 16 16 C 1.37954 * 120.22153 * 0.02562 * 15 14 13 17 17 C 1.39176 * 119.79247 * 359.97438 * 16 15 14 18 18 C 1.47603 * 133.40921 * 180.02562 * 17 16 15 19 19 C 1.39175 * 133.40092 * 359.97438 * 18 17 16 20 20 C 1.37961 * 119.78473 * 179.97438 * 19 18 17 21 21 C 1.38593 * 120.22490 * 0.02562 * 20 19 18 22 22 C 1.37904 * 120.55110 * 359.97438 * 21 20 19 23 23 C 1.38583 * 124.88966 * 264.89239 * 11 9 7 24 24 H 0.97007 * 120.00044 * 0.02562 * 1 2 3 25 25 H 1.07991 * 119.97739 * 359.24940 * 13 12 11 26 26 H 1.07996 * 119.72373 * 179.69589 * 14 13 12 27 27 H 1.07999 * 119.88959 * 180.02562 * 15 14 13 28 28 H 1.07999 * 120.10466 * 180.02562 * 16 15 14 29 29 H 1.07998 * 120.11320 * 359.95460 * 19 18 17 30 30 H 1.08006 * 119.88766 * 179.97438 * 20 19 18 31 31 H 1.07997 * 119.72551 * 180.02562 * 21 20 19 32 32 H 1.07999 * 119.98169 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 3.7000 1.3464 0.0006 5 1 1.8814 2.3964 -1.2125 6 1 1.8813 2.3965 1.2124 7 6 2.0070 -1.2140 0.0005 8 1 3.0870 -1.2140 0.0010 9 6 1.2982 -2.4416 0.0005 10 8 0.0847 -2.4438 -0.0951 11 7 1.9675 -3.6062 0.1120 12 6 2.3601 -4.1833 1.3092 13 6 2.1940 -3.7949 2.6351 14 6 2.6906 -4.5824 3.6524 15 6 3.3523 -5.7665 3.3679 16 6 3.5216 -6.1703 2.0596 17 6 3.0251 -5.3846 1.0237 18 6 3.0336 -5.5205 -0.4461 19 6 3.5415 -6.4820 -1.3146 20 6 3.3873 -6.3251 -2.6766 21 6 2.7297 -5.2142 -3.1809 22 6 2.2219 -4.2544 -2.3308 23 6 2.3673 -4.3959 -0.9543 24 1 -0.4850 0.8401 -0.0004 25 1 1.6802 -2.8739 2.8672 26 1 2.5632 -4.2737 4.6794 27 1 3.7365 -6.3751 4.1730 28 1 4.0372 -7.0935 1.8401 29 1 4.0549 -7.3481 -0.9239 30 1 3.7811 -7.0701 -3.3522 31 1 2.6132 -5.0997 -4.2484 32 1 1.7107 -3.3926 -2.7337 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090568487.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:08 Heat of formation + Delta-G solvation = 33.250203 kcal Electronic energy + Delta-G solvation = -19006.900980 eV Core-core repulsion = 16090.426441 eV Total energy + Delta-G solvation = -2916.474539 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.11840 -37.57790 -37.40145 -34.92685 -33.01466 -31.69239 -30.16993 -28.89217 -28.29694 -26.91605 -23.79850 -22.21917 -21.74352 -20.28504 -19.78533 -17.57073 -16.97612 -16.39741 -16.00553 -14.88793 -14.49158 -14.46832 -14.33210 -13.61478 -13.52120 -13.32989 -13.08772 -12.89139 -11.95045 -11.83418 -11.82133 -11.48157 -11.42344 -11.08416 -10.99209 -10.69977 -10.50786 -10.39466 -10.24627 -9.26651 -9.23460 -8.48754 -8.28358 -7.47978 -6.94120 -6.67346 -5.33385 1.28055 1.64926 2.39942 2.42317 2.85072 2.97502 3.03858 3.64443 3.68459 3.89817 4.27047 4.47558 4.92242 5.02885 5.14746 5.41559 5.42046 5.43706 5.65300 5.83460 5.84792 5.96722 6.11971 6.17627 6.30601 6.48144 6.57299 6.76683 6.83130 6.92075 6.96516 6.98698 7.18371 7.27903 7.37944 7.67763 7.87480 7.92810 8.43093 8.72707 9.85629 10.11844 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.016575 B = 0.008033 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.906272 B = 3484.650022 C = 4642.856728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.730 5.730 2 C 0.079 3.921 3 Si 0.920 3.080 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.500 4.500 8 H 0.079 0.921 9 C 0.523 3.477 10 O -0.528 6.528 11 N -0.478 5.478 12 C 0.163 3.837 13 C -0.129 4.129 14 C -0.093 4.093 15 C -0.164 4.164 16 C -0.067 4.067 17 C -0.114 4.114 18 C -0.114 4.114 19 C -0.067 4.067 20 C -0.165 4.165 21 C -0.093 4.093 22 C -0.131 4.131 23 C 0.160 3.840 24 H 0.281 0.719 25 H 0.124 0.876 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.424 -7.207 0.834 10.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.146 4.146 3 Si 0.743 3.257 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.533 4.533 8 H 0.098 0.902 9 C 0.339 3.661 10 O -0.408 6.408 11 N -0.178 5.178 12 C 0.058 3.942 13 C -0.150 4.150 14 C -0.113 4.113 15 C -0.184 4.184 16 C -0.086 4.086 17 C -0.119 4.119 18 C -0.118 4.118 19 C -0.086 4.086 20 C -0.184 4.184 21 C -0.112 4.112 22 C -0.151 4.151 23 C 0.056 3.944 24 H 0.092 0.908 25 H 0.142 0.858 26 H 0.140 0.860 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.352 -6.765 0.746 9.310 hybrid contribution 0.356 0.928 -0.008 0.994 sum 6.708 -5.837 0.738 8.923 Atomic orbital electron populations 1.69975 1.07602 1.29001 1.29149 1.25981 0.94858 1.01363 0.92448 0.86075 0.80777 0.79959 0.78930 1.18057 1.19363 1.19370 1.20657 0.95232 0.89769 1.47611 0.90246 1.17189 0.86710 0.81092 0.81077 1.90660 1.14852 1.85545 1.49772 1.43673 1.50006 1.21302 1.02827 1.18341 0.96072 0.92306 0.87445 1.20265 1.03910 1.01600 0.89234 1.20754 0.97916 0.94534 0.98059 1.20747 1.03860 0.98046 0.95730 1.20355 0.98596 0.98330 0.91303 1.18782 1.04965 0.96381 0.91733 1.18779 1.04866 0.96650 0.91522 1.20362 0.98544 0.97217 0.92430 1.20749 1.03913 0.99153 0.94593 1.20751 0.97876 0.93762 0.98832 1.20246 1.03981 1.01181 0.89734 1.18385 0.96068 0.90505 0.89470 0.90806 0.85768 0.86016 0.86346 0.86437 0.86425 0.86337 0.86018 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.16 11.74 55.56 0.65 -19.51 16 2 C 0.08 2.05 5.50 -17.34 -0.10 1.95 16 3 Si 0.92 18.72 29.56 -169.99 -5.02 13.69 16 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 7 C -0.50 -13.70 9.42 -37.51 -0.35 -14.06 16 8 H 0.08 2.09 7.85 -52.49 -0.41 1.67 16 9 C 0.52 14.97 6.27 -14.92 -0.09 14.87 16 10 O -0.53 -16.97 15.75 5.17 0.08 -16.89 16 11 N -0.48 -12.21 2.79 -60.45 -0.17 -12.38 16 12 C 0.16 3.74 6.70 -83.72 -0.56 3.18 16 13 C -0.13 -2.66 9.88 -39.37 -0.39 -3.04 16 14 C -0.09 -1.53 10.02 -39.58 -0.40 -1.92 16 15 C -0.16 -2.47 10.04 -39.56 -0.40 -2.86 16 16 C -0.07 -1.10 10.09 -39.34 -0.40 -1.50 16 17 C -0.11 -2.31 6.34 -104.97 -0.67 -2.97 16 18 C -0.11 -2.30 6.34 -104.97 -0.67 -2.97 16 19 C -0.07 -1.10 10.09 -39.34 -0.40 -1.49 16 20 C -0.16 -2.47 10.04 -39.55 -0.40 -2.87 16 21 C -0.09 -1.52 10.02 -39.57 -0.40 -1.92 16 22 C -0.13 -2.68 9.88 -39.37 -0.39 -3.07 16 23 C 0.16 3.68 6.70 -83.72 -0.56 3.12 16 24 H 0.28 6.86 8.29 -40.82 -0.34 6.52 16 25 H 0.12 2.65 8.06 -52.49 -0.42 2.22 16 26 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 31 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 32 H 0.12 2.62 8.06 -52.49 -0.42 2.19 16 LS Contribution 289.08 15.07 4.36 4.36 Total: -1.00 -32.51 289.08 -9.19 -41.69 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -2.93 Total: 4.59 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -6.15 Total: -15.55 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.48 Total: -31.88 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.08 Total: -16.89 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.51 -9.19 -41.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090568487.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.942 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds