Wall clock time and date at job start Mon Mar 30 2020 06:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30609 * 1 3 3 Si 1.86796 * 119.99993 * 2 1 4 4 H 1.48497 * 109.47197 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47124 * 299.99664 * 3 2 1 6 6 H 1.48499 * 109.47451 * 59.99500 * 3 2 1 7 7 C 1.40180 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99908 * 180.02562 * 7 2 1 9 9 C 1.41751 * 119.99962 * 0.02562 * 7 2 1 10 10 O 1.21723 * 120.00076 * 5.17879 * 9 7 2 11 11 N 1.34781 * 119.99934 * 185.45402 * 9 7 2 12 12 C 1.38582 * 124.88561 * 84.58828 * 11 9 7 13 13 C 1.39150 * 132.30828 * 0.75928 * 12 11 9 14 14 C 1.37900 * 120.03681 * 179.55569 * 13 12 11 15 15 C 1.38590 * 120.55576 * 359.71207 * 14 13 12 16 16 C 1.37954 * 120.22153 * 0.02562 * 15 14 13 17 17 C 1.39176 * 119.79247 * 359.97438 * 16 15 14 18 18 C 1.47603 * 133.40921 * 180.02562 * 17 16 15 19 19 C 1.39175 * 133.40092 * 359.97438 * 18 17 16 20 20 C 1.37961 * 119.78473 * 179.97438 * 19 18 17 21 21 C 1.38593 * 120.22490 * 0.02562 * 20 19 18 22 22 C 1.37904 * 120.55110 * 359.97438 * 21 20 19 23 23 C 1.38583 * 124.88966 * 264.89239 * 11 9 7 24 24 H 0.97007 * 120.00044 * 0.02562 * 1 2 3 25 25 H 1.07991 * 119.97739 * 359.24940 * 13 12 11 26 26 H 1.07996 * 119.72373 * 179.69589 * 14 13 12 27 27 H 1.07999 * 119.88959 * 180.02562 * 15 14 13 28 28 H 1.07999 * 120.10466 * 180.02562 * 16 15 14 29 29 H 1.07998 * 120.11320 * 359.95460 * 19 18 17 30 30 H 1.08006 * 119.88766 * 179.97438 * 20 19 18 31 31 H 1.07997 * 119.72551 * 180.02562 * 21 20 19 32 32 H 1.07999 * 119.98169 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 3.7000 1.3464 0.0006 5 1 1.8814 2.3964 -1.2125 6 1 1.8813 2.3965 1.2124 7 6 2.0070 -1.2140 0.0005 8 1 3.0870 -1.2140 0.0010 9 6 1.2982 -2.4416 0.0005 10 8 0.0847 -2.4438 -0.0951 11 7 1.9675 -3.6062 0.1120 12 6 2.3601 -4.1833 1.3092 13 6 2.1940 -3.7949 2.6351 14 6 2.6906 -4.5824 3.6524 15 6 3.3523 -5.7665 3.3679 16 6 3.5216 -6.1703 2.0596 17 6 3.0251 -5.3846 1.0237 18 6 3.0336 -5.5205 -0.4461 19 6 3.5415 -6.4820 -1.3146 20 6 3.3873 -6.3251 -2.6766 21 6 2.7297 -5.2142 -3.1809 22 6 2.2219 -4.2544 -2.3308 23 6 2.3673 -4.3959 -0.9543 24 1 -0.4850 0.8401 -0.0004 25 1 1.6802 -2.8739 2.8672 26 1 2.5632 -4.2737 4.6794 27 1 3.7365 -6.3751 4.1730 28 1 4.0372 -7.0935 1.8401 29 1 4.0549 -7.3481 -0.9239 30 1 3.7811 -7.0701 -3.3522 31 1 2.6132 -5.0997 -4.2484 32 1 1.7107 -3.3926 -2.7337 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090568487.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:08 Heat of formation + Delta-G solvation = 13.836178 kcal Electronic energy + Delta-G solvation = -19007.742835 eV Core-core repulsion = 16090.426441 eV Total energy + Delta-G solvation = -2917.316394 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.084 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.68172 -39.33826 -38.95192 -36.56883 -35.10348 -33.20082 -31.55968 -30.55539 -29.68774 -28.87893 -25.34652 -23.77755 -23.16098 -21.71459 -21.55821 -19.40989 -18.44128 -18.19374 -17.63343 -16.73271 -16.10732 -15.86080 -15.76989 -15.11330 -15.00000 -14.86184 -14.75050 -14.24804 -13.88208 -13.66983 -13.22427 -13.17188 -12.92467 -12.73679 -12.60561 -12.24473 -11.88053 -11.87288 -11.81451 -11.23773 -10.66355 -10.47574 -9.89730 -8.89720 -8.80661 -8.38240 -7.53447 -0.10603 0.24030 0.96674 1.01948 1.13966 1.25176 1.45889 1.73294 1.98770 2.21844 2.82621 2.90551 3.07915 3.63739 3.70765 4.04254 4.11504 4.24802 4.37111 4.45056 4.47682 4.55948 4.72364 4.80204 4.86165 4.96611 5.13047 5.15891 5.45913 5.49158 5.55760 5.60574 5.62575 5.79158 5.91456 5.95737 6.11010 6.32672 6.37071 6.81402 7.74200 8.14374 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.016575 B = 0.008033 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.906272 B = 3484.650022 C = 4642.856728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.027 3.973 3 Si 1.008 2.992 4 H -0.251 1.251 5 H -0.253 1.253 6 H -0.252 1.252 7 C -0.522 4.522 8 H 0.080 0.920 9 C 0.519 3.481 10 O -0.589 6.589 11 N -0.510 5.510 12 C 0.113 3.887 13 C -0.168 4.168 14 C -0.079 4.079 15 C -0.148 4.148 16 C -0.059 4.059 17 C -0.126 4.126 18 C -0.125 4.125 19 C -0.059 4.059 20 C -0.148 4.148 21 C -0.079 4.079 22 C -0.170 4.170 23 C 0.109 3.891 24 H 0.293 0.707 25 H 0.092 0.908 26 H 0.156 0.844 27 H 0.171 0.829 28 H 0.162 0.838 29 H 0.163 0.837 30 H 0.171 0.829 31 H 0.157 0.843 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.726 -9.652 1.252 14.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.194 4.194 3 Si 0.824 3.176 4 H -0.174 1.174 5 H -0.177 1.177 6 H -0.176 1.176 7 C -0.554 4.554 8 H 0.098 0.902 9 C 0.338 3.662 10 O -0.476 6.476 11 N -0.212 5.212 12 C 0.010 3.990 13 C -0.190 4.190 14 C -0.098 4.098 15 C -0.166 4.166 16 C -0.077 4.077 17 C -0.130 4.130 18 C -0.129 4.129 19 C -0.077 4.077 20 C -0.167 4.167 21 C -0.097 4.097 22 C -0.192 4.192 23 C 0.007 3.993 24 H 0.104 0.896 25 H 0.110 0.890 26 H 0.174 0.826 27 H 0.188 0.812 28 H 0.180 0.820 29 H 0.180 0.820 30 H 0.189 0.811 31 H 0.174 0.826 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.687 -9.262 1.169 13.453 hybrid contribution -0.629 1.520 -0.128 1.650 sum 9.058 -7.742 1.041 11.961 Atomic orbital electron populations 1.70076 1.09866 1.31050 1.29238 1.27299 0.95756 1.05492 0.90860 0.84825 0.78975 0.73753 0.80035 1.17433 1.17681 1.17562 1.21035 0.95384 0.90900 1.48036 0.90199 1.17394 0.86180 0.82798 0.79814 1.90575 1.17103 1.87102 1.52772 1.43294 1.51606 1.21498 1.04786 1.18917 0.98396 0.94292 0.87359 1.20370 1.06451 1.02107 0.90049 1.21198 0.95970 0.94225 0.98398 1.21344 1.01487 0.97098 0.96706 1.20913 0.97225 0.98913 0.90666 1.19142 1.05180 0.95848 0.92805 1.19140 1.05082 0.96605 0.92094 1.20921 0.97154 0.97093 0.92523 1.21349 1.01559 0.98818 0.94935 1.21196 0.95902 0.92711 0.99939 1.20362 1.06545 1.02303 0.89944 1.18963 0.98398 0.92046 0.89884 0.89582 0.88972 0.82591 0.81152 0.82016 0.81990 0.81133 0.82585 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -45.75 11.74 21.86 0.26 -45.49 16 2 C 0.03 1.49 5.50 85.35 0.47 1.96 16 3 Si 1.01 39.63 29.56 68.60 2.03 41.66 16 4 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 6 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 7 C -0.52 -31.11 9.42 23.61 0.22 -30.89 16 8 H 0.08 4.56 7.85 -2.91 -0.02 4.54 16 9 C 0.52 32.93 6.27 85.11 0.53 33.46 16 10 O -0.59 -42.05 15.75 -4.42 -0.07 -42.12 16 11 N -0.51 -28.59 2.79 -463.37 -1.29 -29.88 16 12 C 0.11 5.54 6.70 38.78 0.26 5.80 16 13 C -0.17 -7.41 9.88 22.41 0.22 -7.19 16 14 C -0.08 -2.49 10.02 22.27 0.22 -2.27 16 15 C -0.15 -3.81 10.04 22.29 0.22 -3.59 16 16 C -0.06 -1.72 10.09 22.43 0.23 -1.50 16 17 C -0.13 -5.07 6.34 -20.09 -0.13 -5.19 16 18 C -0.13 -5.05 6.34 -20.09 -0.13 -5.18 16 19 C -0.06 -1.72 10.09 22.43 0.23 -1.49 16 20 C -0.15 -3.83 10.04 22.29 0.22 -3.60 16 21 C -0.08 -2.48 10.02 22.28 0.22 -2.26 16 22 C -0.17 -7.51 9.88 22.41 0.22 -7.29 16 23 C 0.11 5.39 6.70 38.78 0.26 5.65 16 24 H 0.29 15.11 8.29 -92.70 -0.77 14.34 16 25 H 0.09 4.45 8.06 -2.92 -0.02 4.43 16 26 H 0.16 3.71 8.06 -2.91 -0.02 3.68 16 27 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 28 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 29 H 0.16 3.27 8.06 -2.91 -0.02 3.24 16 30 H 0.17 2.75 8.06 -2.91 -0.02 2.72 16 31 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 32 H 0.09 4.41 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -83.59 289.08 5.34 -78.25 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 1.14 Total: 21.17 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: 3.28 Total: -23.58 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -1.04 Total: -75.38 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -0.07 Total: -42.12 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -83.59 5.34 -78.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090568487.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.082 kcal (2) G-P(sol) polarization free energy of solvation -83.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds