Wall clock time and date at job start Mon Mar 30 2020 06:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32769 * 123.45922 * 2 1 4 4 S 1.75508 * 110.57310 * 180.24087 * 3 2 1 5 5 C 1.70449 * 92.44502 * 359.64086 * 4 3 2 6 6 C 1.36015 * 110.81665 * 0.35233 * 5 4 3 7 7 C 1.47183 * 123.45850 * 179.70720 * 6 5 4 8 8 O 1.21640 * 120.00022 * 149.71100 * 7 6 5 9 9 N 1.34777 * 120.00300 * 329.70375 * 7 6 5 10 10 C 1.46506 * 119.99875 * 7.03325 * 9 7 6 11 11 C 1.50699 * 109.47271 * 98.19140 * 10 9 7 12 12 H 1.07998 * 119.99611 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99883 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00198 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00015 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46931 * 89.99673 * 15 13 11 17 17 H 1.48490 * 109.47574 * 210.00078 * 15 13 11 18 18 H 1.48507 * 109.46791 * 330.00464 * 15 13 11 19 19 C 1.46495 * 120.00396 * 187.02621 * 9 7 6 20 20 C 1.53003 * 117.49504 * 25.22742 * 19 9 7 21 21 C 1.52996 * 117.49968 * 316.56836 * 19 9 7 22 22 H 1.09001 * 109.47013 * 90.01955 * 1 2 3 23 23 H 1.08996 * 109.47484 * 210.03207 * 1 2 3 24 24 H 1.09004 * 109.47083 * 330.03137 * 1 2 3 25 25 H 1.07991 * 124.71275 * 359.97438 * 3 2 1 26 26 H 1.08002 * 124.59159 * 180.08879 * 5 4 3 27 27 H 1.09000 * 109.46942 * 218.19420 * 10 9 7 28 28 H 1.09001 * 109.47111 * 338.19331 * 10 9 7 29 29 H 0.96997 * 120.00075 * 180.02562 * 14 13 11 30 30 H 1.08999 * 115.55639 * 170.89359 * 19 9 7 31 31 H 1.08997 * 117.49958 * 0.02562 * 20 19 9 32 32 H 1.08999 * 117.49833 * 145.02061 * 20 19 9 33 33 H 1.08997 * 117.50107 * 214.97367 * 21 19 9 34 34 H 1.08998 * 117.49890 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9499 0.7163 -0.0069 5 6 3.6410 -0.9600 0.0010 6 6 2.3031 -1.2050 0.0006 7 6 1.7261 -2.5590 0.0003 8 8 0.6507 -2.7620 0.5314 9 7 2.3891 -3.5740 -0.5884 10 6 3.7493 -3.3663 -1.0916 11 6 4.7428 -3.8719 -0.0775 12 1 4.3957 -4.3050 0.8489 13 6 6.0947 -3.7825 -0.3330 14 7 6.5173 -3.2555 -1.4613 15 14 7.3262 -4.4085 0.9243 16 1 7.6227 -5.8389 0.6571 17 1 8.5788 -3.6168 0.8272 18 1 6.7560 -4.2677 2.2883 19 6 1.7499 -4.8850 -0.7251 20 6 0.2206 -4.9259 -0.7514 21 6 0.9789 -5.4243 0.4813 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3634 -0.8896 0.5143 24 1 -0.3633 0.8903 0.5134 25 1 1.8375 2.1101 -0.0004 26 1 4.4043 -1.7241 0.0015 27 1 3.8772 -3.9096 -2.0279 28 1 3.9147 -2.3027 -1.2633 29 1 7.4684 -3.1929 -1.6412 30 1 2.2833 -5.6060 -1.3447 31 1 -0.3097 -3.9774 -0.6675 32 1 -0.2520 -5.6740 -1.3880 33 1 1.0048 -6.5000 0.6553 34 1 0.9477 -4.8038 1.3769 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094205302.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:08 Heat of formation + Delta-G solvation = 26.577346 kcal Electronic energy + Delta-G solvation = -18308.371122 eV Core-core repulsion = 15527.051178 eV Total energy + Delta-G solvation = -2781.319944 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.44968 -38.58904 -37.13797 -36.03521 -34.18362 -31.72268 -29.26380 -28.52317 -25.61395 -24.49643 -23.62227 -23.23360 -20.90548 -19.24514 -18.72049 -18.37168 -17.51781 -16.82013 -16.37458 -16.17240 -15.71857 -14.79305 -14.63286 -14.52652 -14.31054 -14.29007 -13.90130 -13.39939 -13.05942 -13.02108 -12.87929 -12.69262 -12.41426 -12.26111 -12.06561 -11.97892 -11.74804 -11.49346 -11.20023 -10.70784 -10.42554 -9.62967 -9.31037 -9.09266 -8.25638 -6.42318 -0.01449 0.76335 1.05581 1.16077 1.37751 1.41006 1.49970 2.15800 2.26560 2.43275 3.01287 3.12255 3.73058 3.97598 4.03497 4.21724 4.24397 4.34302 4.64915 4.70481 4.77473 4.82261 4.84732 4.90006 5.00307 5.07573 5.12085 5.18694 5.39403 5.42689 5.61339 5.64793 5.89449 5.97196 6.51812 6.75831 7.24271 7.35558 8.77446 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.009781 C = 0.006327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.158069 B = 2861.874850 C = 4424.435917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.075 4.075 3 C -0.240 4.240 4 S 0.191 5.809 5 C -0.217 4.217 6 C -0.190 4.190 7 C 0.569 3.431 8 O -0.569 6.569 9 N -0.568 5.568 10 C 0.227 3.773 11 C -0.547 4.547 12 H 0.049 0.951 13 C 0.030 3.970 14 N -0.909 5.909 15 Si 0.951 3.049 16 H -0.273 1.273 17 H -0.275 1.275 18 H -0.274 1.274 19 C 0.064 3.936 20 C -0.173 4.173 21 C -0.181 4.181 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.090 0.910 25 H 0.200 0.800 26 H 0.194 0.806 27 H 0.014 0.986 28 H 0.062 0.938 29 H 0.272 0.728 30 H 0.133 0.867 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.751 5.852 0.719 8.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 C -0.375 4.375 4 S 0.457 5.543 5 C -0.354 4.354 6 C -0.207 4.207 7 C 0.359 3.641 8 O -0.453 6.453 9 N -0.295 5.295 10 C 0.107 3.893 11 C -0.585 4.585 12 H 0.067 0.933 13 C -0.172 4.172 14 N -0.547 5.547 15 Si 0.776 3.224 16 H -0.199 1.199 17 H -0.200 1.200 18 H -0.199 1.199 19 C -0.041 4.041 20 C -0.211 4.211 21 C -0.219 4.219 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.108 0.892 25 H 0.217 0.783 26 H 0.211 0.789 27 H 0.032 0.968 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.150 0.850 31 H 0.115 0.885 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.759 6.678 0.844 8.858 hybrid contribution -0.127 -1.582 0.481 1.659 sum -5.886 5.095 1.325 7.897 Atomic orbital electron populations 1.20590 0.88085 1.03929 1.02745 1.19992 0.98045 0.89680 1.00909 1.25583 0.96054 1.03101 1.12734 1.82669 1.06022 0.95971 1.69594 1.27091 1.01298 1.04338 1.02716 1.20300 0.92903 0.94473 1.13028 1.17926 0.83903 0.84382 0.77934 1.90558 1.23218 1.84697 1.46836 1.47524 1.16439 1.09085 1.56496 1.19874 0.76514 0.98991 0.93947 1.21531 0.91427 1.41504 1.04037 0.93254 1.25584 0.99626 0.94842 0.97114 1.69996 1.16218 1.44039 1.24408 0.85652 0.78576 0.78775 0.79378 1.19866 1.20003 1.19932 1.21783 0.92563 0.86521 1.03215 1.23418 0.93196 1.03744 1.00730 1.23174 1.04586 1.00963 0.93219 0.90950 0.91396 0.89156 0.78286 0.78922 0.96757 0.92121 0.91899 0.84978 0.88549 0.86376 0.86816 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.72 9.90 71.24 0.71 -2.02 16 2 C -0.08 -2.53 6.00 -19.46 -0.12 -2.65 16 3 C -0.24 -6.73 10.91 66.64 0.73 -6.00 16 4 S 0.19 5.96 23.02 -56.49 -1.30 4.66 16 5 C -0.22 -8.98 8.44 67.30 0.57 -8.41 16 6 C -0.19 -7.86 5.63 -19.87 -0.11 -7.97 16 7 C 0.57 25.50 7.14 86.59 0.62 26.12 16 8 O -0.57 -25.66 10.28 -4.16 -0.04 -25.70 16 9 N -0.57 -25.60 2.85 -806.26 -2.30 -27.89 16 10 C 0.23 11.16 4.72 85.63 0.40 11.57 16 11 C -0.55 -28.44 7.72 25.60 0.20 -28.24 16 12 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 13 C 0.03 1.56 5.35 84.66 0.45 2.01 16 14 N -0.91 -48.17 13.29 21.45 0.28 -47.88 16 15 Si 0.95 41.15 29.54 68.60 2.03 43.17 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 C 0.06 2.49 6.62 44.99 0.30 2.79 16 20 C -0.17 -5.85 9.66 30.62 0.30 -5.55 16 21 C -0.18 -6.48 9.78 30.62 0.30 -6.18 16 22 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.07 2.31 5.93 -2.39 -0.01 2.29 16 24 H 0.09 1.99 8.13 -2.38 -0.02 1.97 16 25 H 0.20 3.89 8.06 -2.92 -0.02 3.86 16 26 H 0.19 9.24 3.94 -2.91 -0.01 9.23 16 27 H 0.01 0.75 8.13 -2.39 -0.02 0.73 16 28 H 0.06 3.06 4.06 -2.39 -0.01 3.05 16 29 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 30 H 0.13 4.88 8.14 -2.39 -0.02 4.86 16 31 H 0.10 3.67 5.91 -2.39 -0.01 3.66 16 32 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 33 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 34 H 0.07 3.08 6.87 -2.39 -0.02 3.06 16 Total: -1.00 -58.62 291.88 4.13 -54.49 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 1.12 Total: 23.69 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 4.34 Total: -24.54 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -2.01 Total: -75.78 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.04 Total: -25.70 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: 5.96 SS G_CDS: -1.30 Total: 4.66 kcal Total: -58.62 4.13 -54.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094205302.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.070 kcal (2) G-P(sol) polarization free energy of solvation -58.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds