Wall clock time and date at job start Mon Mar 30 2020 06:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35013 * 120.00157 * 2 1 4 4 C 1.47100 * 120.00302 * 190.57179 * 3 2 1 5 5 C 1.39908 * 120.15892 * 223.88502 * 4 3 2 6 6 C 1.37819 * 119.83197 * 179.97438 * 5 4 3 7 7 C 1.38552 * 120.16570 * 359.97438 * 6 5 4 8 8 Cl 1.73601 * 119.83801 * 179.97438 * 7 6 5 9 9 C 1.38556 * 120.32494 * 0.25156 * 7 6 5 10 10 C 1.37831 * 120.15712 * 359.49333 * 9 7 6 11 11 C 1.46199 * 119.99973 * 180.02562 * 2 1 3 12 12 O 1.21766 * 119.99550 * 187.32608 * 11 2 1 13 13 N 1.34777 * 119.99813 * 7.32539 * 11 2 1 14 14 C 1.36722 * 119.99688 * 179.97438 * 13 11 2 15 15 H 1.08001 * 120.00242 * 0.02562 * 14 13 11 16 16 C 1.39116 * 119.99936 * 180.02562 * 14 13 11 17 17 N 1.31328 * 120.00138 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99901 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.46985 * 90.00331 * 18 16 14 20 20 H 1.48500 * 109.46910 * 210.00134 * 18 16 14 21 21 H 1.48497 * 109.47064 * 330.00137 * 18 16 14 22 22 H 1.08996 * 109.47655 * 89.99962 * 1 2 3 23 23 H 1.09007 * 109.46966 * 209.99886 * 1 2 3 24 24 H 1.08998 * 109.46778 * 329.99310 * 1 2 3 25 25 H 1.08000 * 120.00039 * 10.56771 * 3 2 1 26 26 H 1.07997 * 120.07690 * 359.95277 * 5 4 3 27 27 H 1.08006 * 119.91807 * 180.02562 * 6 5 4 28 28 H 1.08003 * 119.92029 * 179.71883 * 9 7 6 29 29 H 1.08002 * 120.07767 * 180.24898 * 10 9 7 30 30 H 0.96996 * 120.00328 * 0.02562 * 13 11 2 31 31 H 0.97001 * 120.00283 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1821 1.1692 0.0000 4 6 3.6344 1.1801 -0.2337 5 6 4.4679 1.9765 0.5589 6 6 5.8277 1.9811 0.3344 7 6 6.3697 1.1993 -0.6729 8 17 8.0836 1.2121 -0.9487 9 6 5.5499 0.4116 -1.4649 10 6 4.1888 0.3928 -1.2486 11 6 2.2380 -1.2661 -0.0006 12 8 3.4482 -1.2704 0.1339 13 7 1.5723 -2.4285 -0.1499 14 6 2.2560 -3.6125 -0.1510 15 1 3.3294 -3.6164 -0.0317 16 6 1.5690 -4.8122 -0.3056 17 7 2.2256 -5.9496 -0.3062 18 14 -0.2875 -4.8055 -0.5126 19 1 -0.6243 -4.7136 -1.9560 20 1 -0.8527 -6.0587 0.0487 21 1 -0.8613 -3.6388 0.2049 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8901 0.5139 24 1 -0.3633 0.8899 0.5139 25 1 1.6559 2.0966 0.1715 26 1 4.0468 2.5863 1.3445 27 1 6.4725 2.5951 0.9458 28 1 5.9789 -0.1918 -2.2512 29 1 3.5514 -0.2247 -1.8642 30 1 0.6083 -2.4250 -0.2574 31 1 1.7466 -6.7861 -0.4144 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123097435.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:25 Heat of formation + Delta-G solvation = -15.579982 kcal Electronic energy + Delta-G solvation = -17229.564762 eV Core-core repulsion = 14308.539938 eV Total energy + Delta-G solvation = -2921.024824 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.94818 -39.58890 -37.44919 -36.17013 -35.34406 -33.85595 -31.95851 -31.62301 -27.46364 -27.26078 -24.11383 -23.40154 -22.34884 -20.96777 -19.31919 -18.26906 -17.30892 -16.93445 -16.35519 -15.98088 -15.58542 -15.29452 -14.80135 -14.69507 -14.33864 -14.30560 -13.90612 -13.80174 -13.57094 -13.17927 -13.02380 -12.53617 -12.46937 -12.36528 -12.12310 -11.99427 -11.73490 -11.53529 -10.58529 -10.30667 -10.21819 -9.70545 -8.82886 -8.48295 -6.02844 -0.22697 0.52232 0.89792 1.19247 1.26190 1.34910 1.40220 2.17587 2.41455 2.85214 3.00557 3.22225 3.84719 3.91962 4.02011 4.12265 4.35767 4.43852 4.58044 4.68300 4.84644 4.86938 5.03390 5.10166 5.23939 5.35108 5.40708 5.48021 5.55047 5.78693 5.94858 5.99304 6.54349 6.84346 7.35772 7.95872 8.68738 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.024596 B = 0.005415 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.134713 B = 5169.263083 C = 6108.137870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.163 4.163 3 C -0.056 4.056 4 C -0.062 4.062 5 C -0.094 4.094 6 C -0.129 4.129 7 C -0.040 4.040 8 Cl -0.079 7.079 9 C -0.145 4.145 10 C -0.035 4.035 11 C 0.464 3.536 12 O -0.604 6.604 13 N -0.575 5.575 14 C -0.324 4.324 15 H 0.058 0.942 16 C -0.012 4.012 17 N -0.925 5.925 18 Si 0.957 3.043 19 H -0.254 1.254 20 H -0.271 1.271 21 H -0.232 1.232 22 H 0.090 0.910 23 H 0.055 0.945 24 H 0.105 0.895 25 H 0.180 0.820 26 H 0.163 0.837 27 H 0.153 0.847 28 H 0.121 0.879 29 H 0.100 0.900 30 H 0.388 0.612 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.114 17.885 -0.399 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.166 4.166 3 C -0.076 4.076 4 C -0.062 4.062 5 C -0.112 4.112 6 C -0.147 4.147 7 C -0.066 4.066 8 Cl -0.050 7.050 9 C -0.164 4.164 10 C -0.054 4.054 11 C 0.255 3.745 12 O -0.491 6.491 13 N -0.214 5.214 14 C -0.454 4.454 15 H 0.076 0.924 16 C -0.212 4.212 17 N -0.565 5.565 18 Si 0.776 3.224 19 H -0.178 1.178 20 H -0.196 1.196 21 H -0.155 1.155 22 H 0.108 0.892 23 H 0.074 0.926 24 H 0.124 0.876 25 H 0.197 0.803 26 H 0.180 0.820 27 H 0.171 0.829 28 H 0.139 0.861 29 H 0.118 0.882 30 H 0.224 0.776 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.172 17.595 -0.350 17.882 hybrid contribution -0.218 -1.274 -0.266 1.319 sum -3.391 16.321 -0.616 16.681 Atomic orbital electron populations 1.20919 0.88214 1.04215 1.03866 1.22063 0.97818 0.91657 1.05057 1.22390 0.91249 0.97915 0.96042 1.19235 0.94774 0.96528 0.95700 1.21471 0.92256 0.98557 0.98909 1.21102 0.96004 1.00168 0.97473 1.21066 0.84194 1.01612 0.99745 1.98326 1.12812 1.97873 1.96009 1.20889 0.93681 1.00503 1.01307 1.21018 0.94109 0.93490 0.96770 1.18692 0.87758 0.84907 0.83171 1.90742 1.15430 1.87190 1.55691 1.42088 1.09191 1.05590 1.64512 1.19029 0.93647 0.83852 1.48849 0.92353 1.26152 1.05351 0.93654 0.96043 1.69757 1.39260 0.98756 1.48679 0.85480 0.76507 0.80076 0.80294 1.17828 1.19601 1.15497 0.89191 0.92595 0.87604 0.80298 0.81978 0.82923 0.86137 0.88195 0.77559 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 9.46 71.24 0.67 -1.83 16 2 C -0.16 -5.11 5.88 -18.54 -0.11 -5.22 16 3 C -0.06 -1.49 9.43 23.86 0.23 -1.27 16 4 C -0.06 -2.00 4.54 -20.14 -0.09 -2.09 16 5 C -0.09 -2.54 9.80 22.58 0.22 -2.32 16 6 C -0.13 -3.58 9.81 22.25 0.22 -3.36 16 7 C -0.04 -1.28 6.33 22.42 0.14 -1.13 16 8 Cl -0.08 -2.26 28.95 -2.72 -0.08 -2.34 16 9 C -0.14 -5.27 9.81 22.25 0.22 -5.05 16 10 C -0.04 -1.33 6.59 22.58 0.15 -1.18 16 11 C 0.46 20.97 6.69 86.31 0.58 21.54 16 12 O -0.60 -32.15 11.71 -4.56 -0.05 -32.20 16 13 N -0.57 -27.25 5.00 -311.06 -1.56 -28.81 16 14 C -0.32 -18.87 10.16 84.14 0.85 -18.02 16 15 H 0.06 4.05 7.38 -2.91 -0.02 4.03 16 16 C -0.01 -0.66 5.50 84.98 0.47 -0.20 16 17 N -0.92 -55.22 13.95 21.69 0.30 -54.92 16 18 Si 0.96 38.19 27.74 68.60 1.90 40.09 16 19 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 20 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 21 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 22 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.06 1.31 7.00 -2.38 -0.02 1.29 16 24 H 0.11 1.52 8.07 -2.39 -0.02 1.50 16 25 H 0.18 2.89 8.05 -2.91 -0.02 2.86 16 26 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 27 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 28 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 29 H 0.10 4.11 7.01 -2.91 -0.02 4.09 16 30 H 0.39 15.47 4.03 -92.71 -0.37 15.10 16 31 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -73.44 284.24 4.79 -68.64 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.73 Total: 29.65 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 3.55 Total: -20.12 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -1.25 Total: -83.73 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.05 Total: -32.20 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 1.90 Total: 40.09 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.08 Total: -2.34 kcal Total: -73.44 4.79 -68.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123097435.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.064 kcal (2) G-P(sol) polarization free energy of solvation -73.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds