Wall clock time and date at job start Mon Mar 30 2020 06:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38016 * 119.99899 * 2 1 4 4 C 1.38905 * 120.02937 * 180.02562 * 3 2 1 5 5 N 1.39843 * 119.99180 * 179.97438 * 4 3 2 6 6 C 1.39107 * 120.02109 * 359.97438 * 4 3 2 7 7 Cl 1.73602 * 120.00002 * 179.97438 * 6 4 3 8 8 C 1.38020 * 119.99528 * 359.70492 * 6 4 3 9 9 C 1.39075 * 119.99952 * 180.02562 * 2 1 3 10 10 N 1.39397 * 120.01002 * 359.97438 * 9 2 1 11 11 C 1.36834 * 119.99621 * 90.27600 * 10 9 2 12 12 H 1.08003 * 120.00171 * 187.33525 * 11 10 9 13 13 C 1.38738 * 119.99882 * 7.34510 * 11 10 9 14 14 N 1.31627 * 120.00074 * 13.30795 * 13 11 10 15 15 Si 1.86803 * 119.99735 * 193.31083 * 13 11 10 16 16 H 1.48491 * 109.47338 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46914 * 120.00048 * 15 13 11 18 18 H 1.48497 * 109.47085 * 239.99515 * 15 13 11 19 19 C 1.46500 * 120.00731 * 270.00507 * 10 9 2 20 20 C 1.47206 * 109.46836 * 95.67990 * 19 10 9 21 21 N 4.14455 * 47.32265 * 141.45029 * 2 1 3 22 22 H 1.08999 * 109.47292 * 269.97688 * 1 2 3 23 23 H 1.09004 * 109.47249 * 29.98083 * 1 2 3 24 24 H 1.09010 * 109.47076 * 149.98255 * 1 2 3 25 25 H 1.08001 * 119.98399 * 359.97438 * 3 2 1 26 26 H 0.97010 * 119.99978 * 359.97438 * 5 4 3 27 27 H 0.97000 * 120.00403 * 179.97438 * 5 4 3 28 28 H 1.08001 * 120.01477 * 180.27715 * 8 6 4 29 29 H 0.97002 * 119.99952 * 179.97438 * 14 13 11 30 30 H 1.08994 * 109.47582 * 215.68464 * 19 10 9 31 31 H 1.09001 * 109.46469 * 335.68597 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1953 0.0000 4 6 3.5860 1.1960 -0.0005 5 7 4.2844 2.4075 -0.0011 6 6 4.2827 -0.0081 -0.0005 7 17 6.0187 -0.0065 -0.0019 8 6 3.5936 -1.2039 0.0062 9 6 2.2023 -1.2044 -0.0005 10 7 1.5055 -2.4118 -0.0005 11 6 1.1681 -3.0068 -1.1856 12 1 0.5281 -3.8769 -1.1900 13 6 1.6482 -2.4927 -2.3814 14 7 2.6242 -1.6097 -2.3735 15 14 0.9092 -3.0537 -4.0028 16 1 -0.1660 -4.0436 -3.7406 17 1 0.3403 -1.8836 -4.7187 18 1 1.9657 -3.6792 -4.8381 19 6 1.1397 -3.0466 1.2681 20 6 -0.2385 -2.6718 1.6248 21 7 -1.3025 -2.3830 1.8989 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3634 -0.8899 -0.5141 25 1 1.6567 2.1304 -0.0004 26 1 3.7988 3.2473 -0.0015 27 1 5.2544 2.4083 -0.0011 28 1 4.1341 -2.1389 0.0107 29 1 2.9601 -1.2505 -3.2096 30 1 1.2067 -4.1295 1.1652 31 1 1.8210 -2.7131 2.0509 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125809865.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:52 Heat of formation + Delta-G solvation = 58.389058 kcal Electronic energy + Delta-G solvation = -18006.216677 eV Core-core repulsion = 15120.692142 eV Total energy + Delta-G solvation = -2885.524535 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.42051 -38.15807 -37.02889 -36.54161 -34.56328 -33.25790 -32.64837 -29.34322 -28.29077 -27.41639 -24.76071 -22.90384 -21.62104 -19.34126 -18.50317 -17.73677 -17.32127 -16.86478 -16.22008 -15.61783 -15.22658 -15.07337 -14.47258 -14.43274 -14.15546 -13.81267 -13.68143 -13.53750 -13.27459 -13.01366 -12.77573 -12.50343 -12.28311 -12.10754 -12.02771 -11.95233 -11.80323 -11.46544 -10.88468 -10.69448 -9.17257 -9.05272 -8.21418 -7.35381 -5.25710 0.82575 1.13415 1.48760 1.54526 1.58992 1.60492 1.98356 2.11192 2.59195 3.16689 3.29358 3.36068 3.66410 3.71430 4.24299 4.50284 4.67127 4.72080 4.85172 4.88616 4.94610 5.18153 5.23683 5.46787 5.53503 5.68339 5.77347 6.10541 6.32991 6.37882 6.78285 6.89153 7.19317 7.29813 7.90481 8.19569 9.22419 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.009157 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.215860 B = 3057.197409 C = 3810.645501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.070 4.070 3 C -0.198 4.198 4 C 0.202 3.798 5 N -0.873 5.873 6 C -0.117 4.117 7 Cl -0.094 7.094 8 C -0.015 4.015 9 C 0.210 3.790 10 N -0.554 5.554 11 C -0.269 4.269 12 H 0.086 0.914 13 C -0.025 4.025 14 N -0.891 5.891 15 Si 0.945 3.055 16 H -0.273 1.273 17 H -0.304 1.304 18 H -0.295 1.295 19 C 0.228 3.772 20 C 0.219 3.781 21 N -0.506 5.506 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.126 0.874 26 H 0.404 0.596 27 H 0.398 0.602 28 H 0.105 0.895 29 H 0.244 0.756 30 H 0.125 0.875 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.812 4.047 6.032 8.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 C -0.222 4.222 4 C 0.098 3.902 5 N -0.416 5.416 6 C -0.149 4.149 7 Cl -0.065 7.065 8 C -0.037 4.037 9 C 0.114 3.886 10 N -0.270 5.270 11 C -0.397 4.397 12 H 0.104 0.896 13 C -0.223 4.223 14 N -0.535 5.535 15 Si 0.776 3.224 16 H -0.197 1.197 17 H -0.231 1.231 18 H -0.223 1.223 19 C 0.099 3.901 20 C -0.101 4.101 21 N -0.187 5.187 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.144 0.856 26 H 0.233 0.767 27 H 0.228 0.772 28 H 0.123 0.877 29 H 0.055 0.945 30 H 0.143 0.857 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.448 4.451 6.260 8.419 hybrid contribution 0.297 0.006 -1.649 1.676 sum 3.745 4.457 4.610 7.426 Atomic orbital electron populations 1.20454 0.92290 1.01364 1.00249 1.20159 0.95461 0.93219 0.98524 1.20107 0.91233 0.97587 1.13265 1.17248 0.90820 0.85680 0.96492 1.42278 1.08848 1.04245 1.86229 1.20072 0.82538 0.93858 1.18385 1.98249 1.11828 1.98678 1.97794 1.20765 0.93964 0.94833 0.94132 1.16384 0.88675 0.85141 0.98369 1.41342 1.62932 1.21121 1.01570 1.19420 1.25671 1.11323 0.83333 0.89629 1.25253 0.97953 0.99446 0.99653 1.70183 1.25874 1.32607 1.24797 0.85547 0.77944 0.76935 0.81976 1.19737 1.23133 1.22278 1.18989 0.82623 1.00172 0.88328 1.31780 0.96564 0.91189 0.90547 1.81011 1.14532 1.11446 1.11671 0.92809 0.92689 0.93056 0.85615 0.76678 0.77224 0.87733 0.94537 0.85722 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.43 8.64 71.23 0.62 -2.81 16 2 C -0.07 -2.86 5.87 -19.72 -0.12 -2.98 16 3 C -0.20 -7.25 9.54 22.38 0.21 -7.03 16 4 C 0.20 7.06 6.76 38.23 0.26 7.32 16 5 N -0.87 -23.32 9.05 -51.15 -0.46 -23.78 16 6 C -0.12 -4.39 6.33 22.43 0.14 -4.24 16 7 Cl -0.09 -3.04 27.58 -2.72 -0.08 -3.11 16 8 C -0.02 -0.62 7.91 22.43 0.18 -0.45 16 9 C 0.21 8.79 2.94 38.35 0.11 8.91 16 10 N -0.55 -22.70 1.66 -521.63 -0.86 -23.56 16 11 C -0.27 -12.54 9.10 84.03 0.76 -11.77 16 12 H 0.09 3.89 7.86 -2.91 -0.02 3.86 16 13 C -0.03 -1.24 5.33 84.84 0.45 -0.79 16 14 N -0.89 -45.93 9.61 21.64 0.21 -45.72 16 15 Si 0.95 42.30 29.57 68.60 2.03 44.33 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 18 H -0.30 -13.39 7.11 99.48 0.71 -12.69 16 19 C 0.23 7.10 6.15 84.58 0.52 7.62 16 20 C 0.22 7.63 13.82 89.44 1.24 8.87 16 21 N -0.51 -19.67 18.40 20.01 0.37 -19.30 16 22 H 0.05 2.03 7.57 -2.39 -0.02 2.02 16 23 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 24 H 0.05 2.30 6.63 -2.38 -0.02 2.28 16 25 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 26 H 0.40 8.68 8.84 -92.70 -0.82 7.86 16 27 H 0.40 9.85 7.50 -92.71 -0.69 9.16 16 28 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16 29 H 0.24 12.90 8.31 -92.71 -0.77 12.13 16 30 H 0.13 3.26 8.08 -2.39 -0.02 3.24 16 31 H 0.12 3.09 8.00 -2.39 -0.02 3.08 16 Total: -1.00 -57.05 286.57 5.25 -51.80 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -0.33 Total: 16.72 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 4.38 Total: 2.64 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -0.75 Total: -112.36 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 17 Polarization: -3.04 SS G_CDS: -0.08 Total: -3.11 kcal Total: -57.05 5.25 -51.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125809865.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.185 kcal (2) G-P(sol) polarization free energy of solvation -57.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds