Wall clock time and date at job start Mon Mar 30 2020 06:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86802 * 120.00433 * 2 1 4 4 H 1.48497 * 109.47010 * 270.00102 * 3 2 1 5 5 H 1.48497 * 109.46915 * 29.99903 * 3 2 1 6 6 H 1.48500 * 109.47189 * 149.99910 * 3 2 1 7 7 C 1.38958 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99702 * 0.02562 * 7 2 1 9 9 N 1.37092 * 119.99923 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99827 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99593 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99787 * 180.02562 * 10 9 7 13 13 C 1.53007 * 109.46700 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46833 * 179.97438 * 13 12 10 15 15 S 1.81394 * 109.46998 * 179.97438 * 14 13 12 16 16 C 1.76199 * 103.00056 * 180.02562 * 15 14 13 17 17 C 1.38975 * 120.07816 * 180.02562 * 16 15 14 18 18 C 1.38086 * 119.91892 * 179.97438 * 17 16 15 19 19 C 1.38310 * 120.07752 * 359.97438 * 18 17 16 20 20 C 1.38301 * 120.16067 * 0.02562 * 19 18 17 21 21 C 1.38081 * 120.08205 * 359.97438 * 20 19 18 22 22 H 0.97004 * 119.99814 * 0.02562 * 1 2 3 23 23 H 0.96998 * 120.00414 * 0.02562 * 9 7 2 24 24 H 1.08998 * 109.47396 * 60.00763 * 12 10 9 25 25 H 1.09004 * 109.47206 * 300.00139 * 12 10 9 26 26 H 1.08998 * 109.46977 * 60.00011 * 13 12 10 27 27 H 1.08996 * 109.47156 * 300.00052 * 13 12 10 28 28 H 1.09000 * 109.46939 * 59.99855 * 14 13 12 29 29 H 1.09004 * 109.47160 * 299.99698 * 14 13 12 30 30 H 1.07995 * 120.04427 * 359.69664 * 17 16 15 31 31 H 1.08000 * 119.96089 * 179.97438 * 18 17 16 32 32 H 1.07995 * 119.91521 * 179.97438 * 19 18 17 33 33 H 1.07996 * 119.95950 * 179.97438 * 20 19 18 34 34 H 1.07997 * 120.04201 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4687 -2.1387 0.0005 9 7 3.3797 -1.2035 0.0000 10 6 4.0536 -2.3707 0.0011 11 8 3.4470 -3.4211 0.0020 12 6 5.5606 -2.3708 0.0011 13 6 6.0705 -3.8134 0.0017 14 6 7.6005 -3.8134 0.0011 15 16 8.2050 -5.5237 0.0026 16 6 9.9558 -5.3252 0.0024 17 6 10.7834 -6.4417 0.0029 18 6 12.1550 -6.2823 0.0022 19 6 12.7054 -5.0135 0.0005 20 6 11.8849 -3.9001 0.0001 21 6 10.5125 -4.0518 0.0007 22 1 -0.4850 0.8401 -0.0004 23 1 3.8648 -0.3635 -0.0004 24 1 5.9239 -1.8563 0.8906 25 1 5.9239 -1.8577 -0.8894 26 1 5.7071 -4.3275 -0.8880 27 1 5.7071 -4.3268 0.8919 28 1 7.9642 -3.2991 0.8906 29 1 7.9635 -3.3002 -0.8894 30 1 10.3543 -7.4327 0.0083 31 1 12.7987 -7.1495 0.0030 32 1 13.7785 -4.8919 0.0004 33 1 12.3182 -2.9109 -0.0008 34 1 9.8724 -3.1820 0.0008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126823977.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:40 Heat of formation + Delta-G solvation = -24.819423 kcal Electronic energy + Delta-G solvation = -16268.193532 eV Core-core repulsion = 13484.644856 eV Total energy + Delta-G solvation = -2783.548676 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.13861 -38.51357 -34.61541 -33.73782 -31.68920 -31.35067 -31.18835 -28.14612 -24.74417 -23.10120 -22.85273 -21.49628 -19.35257 -18.29740 -17.94410 -16.50849 -15.86447 -15.65535 -15.28261 -15.03105 -14.73900 -14.10089 -13.92394 -13.75435 -13.39406 -13.20652 -12.80841 -12.43635 -12.07684 -11.97956 -11.54819 -11.49893 -11.22077 -11.06792 -10.66389 -10.61072 -10.26194 -9.99498 -9.96967 -9.60444 -9.26424 -8.57023 -8.21006 -7.54285 -6.33374 -3.84934 0.95752 1.09195 1.36759 2.31355 3.00715 3.05002 3.13422 3.44764 3.71415 4.08039 4.47656 4.57659 4.65779 4.81422 4.82341 5.05998 5.10846 5.19475 5.20895 5.28551 5.45969 5.54743 5.58477 5.70184 5.77039 6.01448 6.09120 6.10017 6.21867 6.26160 6.44695 6.62504 7.54486 8.12452 8.56285 8.92257 9.40222 9.79612 10.79710 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.043985 B = 0.003061 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.422008 B = 9144.338526 C = 9755.012178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.307 4.307 8 H 0.120 0.880 9 N -0.589 5.589 10 C 0.449 3.551 11 O -0.578 6.578 12 C -0.128 4.128 13 C -0.084 4.084 14 C -0.106 4.106 15 S -0.112 6.112 16 C -0.081 4.081 17 C -0.104 4.104 18 C -0.102 4.102 19 C -0.132 4.132 20 C -0.101 4.101 21 C -0.136 4.136 22 H 0.274 0.726 23 H 0.371 0.629 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.182 -5.460 -0.013 25.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.436 4.436 8 H 0.137 0.863 9 N -0.227 5.227 10 C 0.235 3.765 11 O -0.461 6.461 12 C -0.170 4.170 13 C -0.123 4.123 14 C -0.254 4.254 15 S 0.134 5.866 16 C -0.194 4.194 17 C -0.128 4.128 18 C -0.122 4.122 19 C -0.153 4.153 20 C -0.120 4.120 21 C -0.160 4.160 22 H 0.084 0.916 23 H 0.204 0.796 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 23.757 -7.033 -0.011 24.776 hybrid contribution 1.380 2.660 0.014 2.997 sum 25.136 -4.373 0.003 25.514 Atomic orbital electron populations 1.69624 1.05664 1.27537 1.49187 1.25059 0.95514 0.98027 0.97583 0.86662 0.79789 0.83990 0.78905 1.19597 1.20147 1.19465 1.19462 0.79351 0.96655 1.48140 0.86276 1.42249 1.07565 1.06271 1.66650 1.19780 0.88445 0.84433 0.83862 1.90569 1.69933 1.31036 1.54568 1.21497 0.95144 0.97319 1.03063 1.20991 0.89156 0.97098 1.05089 1.23808 1.01078 0.95081 1.05441 1.85757 0.96453 1.12684 1.91681 1.21926 0.97626 0.96383 1.03421 1.20796 0.93106 0.97503 1.01401 1.21094 0.94434 0.97511 0.99190 1.21167 0.99832 0.92632 1.01622 1.21073 0.93090 0.98946 0.98930 1.21245 0.95949 0.95801 1.03015 0.91579 0.79595 0.90150 0.90142 0.90080 0.90081 0.89383 0.89370 0.85501 0.85634 0.85954 0.85800 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.72 13.96 55.50 0.77 -24.94 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.25 27.74 -169.99 -4.71 14.54 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 7 C -0.31 -8.71 10.16 -14.93 -0.15 -8.86 16 8 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 9 N -0.59 -13.97 5.09 -10.96 -0.06 -14.02 16 10 C 0.45 10.04 7.78 -10.98 -0.09 9.95 16 11 O -0.58 -15.44 15.56 5.54 0.09 -15.35 16 12 C -0.13 -1.97 5.70 -27.88 -0.16 -2.13 16 13 C -0.08 -1.22 4.51 -26.73 -0.12 -1.34 16 14 C -0.11 -1.20 4.33 37.16 0.16 -1.04 16 15 S -0.11 -1.37 21.92 -107.50 -2.36 -3.73 16 16 C -0.08 -0.91 6.11 -39.04 -0.24 -1.14 16 17 C -0.10 -1.05 9.79 -39.36 -0.39 -1.43 16 18 C -0.10 -0.86 10.04 -39.61 -0.40 -1.26 16 19 C -0.13 -1.06 10.04 -39.53 -0.40 -1.46 16 20 C -0.10 -0.87 10.04 -39.62 -0.40 -1.27 16 21 C -0.14 -1.38 9.36 -39.37 -0.37 -1.74 16 22 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.37 7.66 5.76 -40.82 -0.24 7.43 16 24 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 27 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 28 H 0.09 0.89 7.75 -51.92 -0.40 0.48 16 29 H 0.09 0.89 7.75 -51.92 -0.40 0.48 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.13 1.13 5.88 -52.49 -0.31 0.82 16 LS Contribution 305.93 15.07 4.61 4.61 Total: -1.00 -32.62 305.93 -8.58 -41.20 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -4.28 Total: 8.38 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -2.64 Total: -10.68 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.72 Total: -38.96 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.09 Total: -15.35 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.54 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.36 Total: -3.73 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.62 -8.58 -41.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126823977.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.376 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds