Wall clock time and date at job start Mon Mar 30 2020 06:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86802 * 120.00433 * 2 1 4 4 H 1.48497 * 109.47010 * 270.00102 * 3 2 1 5 5 H 1.48497 * 109.46915 * 29.99903 * 3 2 1 6 6 H 1.48500 * 109.47189 * 149.99910 * 3 2 1 7 7 C 1.38958 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99702 * 0.02562 * 7 2 1 9 9 N 1.37092 * 119.99923 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99827 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99593 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99787 * 180.02562 * 10 9 7 13 13 C 1.53007 * 109.46700 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46833 * 179.97438 * 13 12 10 15 15 S 1.81394 * 109.46998 * 179.97438 * 14 13 12 16 16 C 1.76199 * 103.00056 * 180.02562 * 15 14 13 17 17 C 1.38975 * 120.07816 * 180.02562 * 16 15 14 18 18 C 1.38086 * 119.91892 * 179.97438 * 17 16 15 19 19 C 1.38310 * 120.07752 * 359.97438 * 18 17 16 20 20 C 1.38301 * 120.16067 * 0.02562 * 19 18 17 21 21 C 1.38081 * 120.08205 * 359.97438 * 20 19 18 22 22 H 0.97004 * 119.99814 * 0.02562 * 1 2 3 23 23 H 0.96998 * 120.00414 * 0.02562 * 9 7 2 24 24 H 1.08998 * 109.47396 * 60.00763 * 12 10 9 25 25 H 1.09004 * 109.47206 * 300.00139 * 12 10 9 26 26 H 1.08998 * 109.46977 * 60.00011 * 13 12 10 27 27 H 1.08996 * 109.47156 * 300.00052 * 13 12 10 28 28 H 1.09000 * 109.46939 * 59.99855 * 14 13 12 29 29 H 1.09004 * 109.47160 * 299.99698 * 14 13 12 30 30 H 1.07995 * 120.04427 * 359.69664 * 17 16 15 31 31 H 1.08000 * 119.96089 * 179.97438 * 18 17 16 32 32 H 1.07995 * 119.91521 * 179.97438 * 19 18 17 33 33 H 1.07996 * 119.95950 * 179.97438 * 20 19 18 34 34 H 1.07997 * 120.04201 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4687 -2.1387 0.0005 9 7 3.3797 -1.2035 0.0000 10 6 4.0536 -2.3707 0.0011 11 8 3.4470 -3.4211 0.0020 12 6 5.5606 -2.3708 0.0011 13 6 6.0705 -3.8134 0.0017 14 6 7.6005 -3.8134 0.0011 15 16 8.2050 -5.5237 0.0026 16 6 9.9558 -5.3252 0.0024 17 6 10.7834 -6.4417 0.0029 18 6 12.1550 -6.2823 0.0022 19 6 12.7054 -5.0135 0.0005 20 6 11.8849 -3.9001 0.0001 21 6 10.5125 -4.0518 0.0007 22 1 -0.4850 0.8401 -0.0004 23 1 3.8648 -0.3635 -0.0004 24 1 5.9239 -1.8563 0.8906 25 1 5.9239 -1.8577 -0.8894 26 1 5.7071 -4.3275 -0.8880 27 1 5.7071 -4.3268 0.8919 28 1 7.9642 -3.2991 0.8906 29 1 7.9635 -3.3002 -0.8894 30 1 10.3543 -7.4327 0.0083 31 1 12.7987 -7.1495 0.0030 32 1 13.7785 -4.8919 0.0004 33 1 12.3182 -2.9109 -0.0008 34 1 9.8724 -3.1820 0.0008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126823977.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:39 Heat of formation + Delta-G solvation = -45.593855 kcal Electronic energy + Delta-G solvation = -16269.094379 eV Core-core repulsion = 13484.644856 eV Total energy + Delta-G solvation = -2784.449523 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.34881 -39.78968 -36.26650 -35.33891 -33.75937 -32.04183 -31.84359 -29.47689 -26.56533 -23.96591 -23.54841 -22.59392 -21.23388 -20.18896 -18.70241 -17.69776 -17.22153 -16.85587 -16.78365 -16.01764 -15.71779 -15.34188 -15.27682 -14.79696 -14.61964 -14.33984 -14.20279 -14.03356 -13.33877 -12.95211 -12.91822 -12.80553 -12.42420 -12.20486 -11.98071 -11.91170 -11.84338 -11.53235 -11.12168 -10.68914 -10.47303 -10.26858 -9.92347 -8.42725 -8.41483 -6.04291 0.27631 0.43258 0.50485 1.30154 1.35861 1.45071 1.47756 1.94476 2.22785 2.79045 2.92626 3.14091 3.83768 3.88784 3.94851 4.01841 4.05340 4.25963 4.45078 4.45289 4.52024 4.55656 4.61929 4.74787 4.81695 5.07229 5.08644 5.26453 5.34239 5.47252 5.53887 5.58268 5.93773 6.00780 6.56500 6.86045 7.37804 7.94830 8.75053 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.043985 B = 0.003061 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.422008 B = 9144.338526 C = 9755.012178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.967 3.033 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.228 1.228 7 C -0.333 4.333 8 H 0.053 0.947 9 N -0.589 5.589 10 C 0.445 3.555 11 O -0.631 6.631 12 C -0.113 4.113 13 C -0.079 4.079 14 C -0.088 4.088 15 S -0.162 6.162 16 C -0.096 4.096 17 C -0.121 4.121 18 C -0.106 4.106 19 C -0.131 4.131 20 C -0.106 4.106 21 C -0.147 4.147 22 H 0.280 0.720 23 H 0.392 0.608 24 H 0.118 0.882 25 H 0.119 0.881 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.126 0.874 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.572 -2.856 0.023 29.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.215 4.215 3 Si 0.787 3.213 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.151 1.151 7 C -0.463 4.463 8 H 0.071 0.929 9 N -0.230 5.230 10 C 0.234 3.766 11 O -0.517 6.517 12 C -0.155 4.155 13 C -0.119 4.119 14 C -0.236 4.236 15 S 0.083 5.917 16 C -0.208 4.208 17 C -0.145 4.145 18 C -0.125 4.125 19 C -0.151 4.151 20 C -0.125 4.125 21 C -0.171 4.171 22 H 0.089 0.911 23 H 0.228 0.772 24 H 0.136 0.864 25 H 0.137 0.863 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.144 0.856 31 H 0.167 0.833 32 H 0.168 0.832 33 H 0.166 0.834 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 28.187 -4.438 0.027 28.534 hybrid contribution 0.028 1.682 -0.002 1.682 sum 28.215 -2.757 0.025 28.350 Atomic orbital electron populations 1.69812 1.08254 1.29336 1.50111 1.26187 0.96518 1.02915 0.95918 0.85332 0.79561 0.76400 0.80024 1.18041 1.20076 1.15116 1.19036 0.81734 0.94900 1.50580 0.92908 1.42080 1.05768 1.07788 1.67379 1.21193 0.91516 0.83083 0.80841 1.90552 1.72043 1.33070 1.56061 1.21506 0.88889 0.98498 1.06613 1.20853 0.91696 0.96320 1.03020 1.23644 0.98107 0.94438 1.07368 1.85917 0.98940 1.14361 1.92467 1.21926 0.96137 0.97464 1.05312 1.20999 0.94069 0.97436 1.02007 1.21420 0.93896 0.98883 0.98328 1.21576 1.01334 0.92200 0.99996 1.21431 0.92579 1.00418 0.98092 1.21476 0.96962 0.95537 1.03109 0.91100 0.77215 0.86413 0.86325 0.92326 0.92347 0.87386 0.87355 0.85565 0.83316 0.83229 0.83388 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.59 13.96 21.66 0.30 -56.29 16 2 C -0.02 -0.93 5.50 84.93 0.47 -0.47 16 3 Si 0.97 38.31 27.74 68.60 1.90 40.21 16 4 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 5 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.23 -7.47 6.52 99.48 0.65 -6.82 16 7 C -0.33 -19.64 10.16 84.04 0.85 -18.78 16 8 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 9 N -0.59 -27.59 5.09 -306.97 -1.56 -29.16 16 10 C 0.44 19.85 7.78 87.66 0.68 20.54 16 11 O -0.63 -35.34 15.56 -3.08 -0.05 -35.39 16 12 C -0.11 -3.15 5.70 29.85 0.17 -2.98 16 13 C -0.08 -2.23 4.51 30.60 0.14 -2.10 16 14 C -0.09 -1.78 4.33 71.98 0.31 -1.47 16 15 S -0.16 -3.94 21.92 -56.49 -1.24 -5.17 16 16 C -0.10 -2.03 6.11 22.62 0.14 -1.90 16 17 C -0.12 -2.32 9.79 22.41 0.22 -2.10 16 18 C -0.11 -1.52 10.04 22.25 0.22 -1.30 16 19 C -0.13 -1.66 10.04 22.30 0.22 -1.44 16 20 C -0.11 -1.47 10.04 22.25 0.22 -1.25 16 21 C -0.15 -2.59 9.36 22.41 0.21 -2.38 16 22 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 23 H 0.39 14.87 5.76 -92.71 -0.53 14.34 16 24 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.12 2.51 8.14 -2.38 -0.02 2.49 16 26 H 0.06 1.90 8.10 -2.39 -0.02 1.88 16 27 H 0.06 1.89 8.10 -2.39 -0.02 1.87 16 28 H 0.11 1.79 7.75 -2.39 -0.02 1.77 16 29 H 0.11 1.79 7.75 -2.39 -0.02 1.77 16 30 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 32 H 0.15 1.05 8.06 -2.91 -0.02 1.02 16 33 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.14 1.98 5.88 -2.91 -0.02 1.96 16 Total: -1.00 -78.22 305.93 3.73 -74.49 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.51 Total: 26.92 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 3.86 Total: -15.62 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -1.26 Total: -85.44 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.05 Total: -35.39 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 1.90 Total: 40.21 kcal Atomic # 16 Polarization: -3.94 SS G_CDS: -1.24 Total: -5.17 kcal Total: -78.22 3.73 -74.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126823977.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.899 kcal (2) G-P(sol) polarization free energy of solvation -78.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds