Wall clock time and date at job start Mon Mar 30 2020 06:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39840 * 120.20087 * 224.42021 * 3 2 1 5 5 Cl 1.73602 * 120.06725 * 0.02562 * 4 3 2 6 6 C 1.37992 * 119.86738 * 180.02562 * 4 3 2 7 7 C 1.38454 * 120.27967 * 0.02562 * 6 4 3 8 8 C 1.38132 * 120.41532 * 0.02562 * 7 6 4 9 9 C 1.38625 * 120.12365 * 359.97438 * 8 7 6 10 10 O 1.35706 * 120.14086 * 179.72977 * 9 8 7 11 11 C 1.42908 * 117.00043 * 359.97438 * 10 9 8 12 12 C 1.53002 * 109.46932 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.46583 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46546 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00319 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99571 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00057 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99612 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47248 * 59.99952 * 18 16 14 20 20 H 1.48504 * 109.46950 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47305 * 299.99793 * 18 16 14 22 22 H 1.07999 * 119.85808 * 180.02562 * 6 4 3 23 23 H 1.08005 * 119.79246 * 179.97438 * 7 6 4 24 24 H 1.08000 * 119.94268 * 179.97438 * 8 7 6 25 25 H 1.09000 * 109.47198 * 300.00411 * 11 10 9 26 26 H 1.08999 * 109.46748 * 60.00167 * 11 10 9 27 27 H 1.09000 * 109.47222 * 300.00038 * 12 11 10 28 28 H 1.08993 * 109.46886 * 60.00399 * 12 11 10 29 29 H 1.09000 * 109.47020 * 299.99729 * 13 12 11 30 30 H 1.08993 * 109.47537 * 60.00365 * 13 12 11 31 31 H 0.97003 * 119.99821 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2710 0.8642 0.8459 5 17 2.4096 1.9400 1.9015 6 6 4.6509 0.8594 0.8399 7 6 5.3424 0.0036 -0.0005 8 6 4.6597 -0.8534 -0.8416 9 6 3.2735 -0.8628 -0.8495 10 8 2.6025 -1.7008 -1.6796 11 6 3.3883 -2.5475 -2.5208 12 6 2.4640 -3.4134 -3.3791 13 6 3.3054 -4.3205 -4.2792 14 6 2.3949 -5.1729 -5.1250 15 1 1.3234 -5.0776 -5.0298 16 6 2.9300 -6.0745 -6.0206 17 7 4.2349 -6.1902 -6.1369 18 14 1.8015 -7.1316 -7.0685 19 1 0.9436 -6.2578 -7.9085 20 1 2.6181 -8.0111 -7.9432 21 1 0.9456 -7.9661 -6.1875 22 1 5.1937 1.5261 1.4936 23 1 6.4225 0.0068 0.0009 24 1 5.2069 -1.5175 -1.4944 25 1 4.0164 -1.9351 -3.1678 26 1 4.0183 -3.1886 -1.9041 27 1 1.8356 -4.0258 -2.7323 28 1 1.8344 -2.7720 -3.9957 29 1 3.9340 -3.7083 -4.9260 30 1 3.9347 -4.9619 -3.6623 31 1 4.6113 -6.8248 -6.7666 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128931407.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:18 Heat of formation + Delta-G solvation = -24.529959 kcal Electronic energy + Delta-G solvation = -16321.080800 eV Core-core repulsion = 13399.667875 eV Total energy + Delta-G solvation = -2921.412924 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.46571 -39.08992 -37.56817 -37.43652 -35.98657 -33.77000 -32.40268 -31.07570 -28.82714 -25.57091 -25.01946 -23.24402 -22.09355 -20.32818 -18.94975 -18.33828 -17.39392 -17.34253 -16.56870 -16.28663 -15.85335 -15.57141 -15.08834 -14.68414 -14.33438 -14.23519 -13.92647 -13.86272 -13.74579 -13.03764 -12.90689 -12.80146 -12.64733 -12.49705 -12.23277 -12.04789 -11.97531 -11.55500 -11.48025 -11.26366 -10.56062 -10.01725 -9.40301 -8.22708 -6.32550 -0.43674 0.14184 0.81128 1.40636 1.42267 1.50343 1.54365 1.83959 2.05598 2.41368 2.64578 2.74985 3.11416 3.77788 3.90684 3.99293 4.05533 4.14189 4.25559 4.35515 4.47126 4.81984 4.84620 4.98010 5.06604 5.13137 5.27486 5.45838 5.51257 5.67352 5.81072 6.13275 6.24463 6.39434 6.82133 7.36394 8.88614 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.039054 B = 0.003375 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.790966 B = 8294.822160 C = 8985.843516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.275 3.725 3 C -0.090 4.090 4 C 0.037 3.963 5 Cl -0.052 7.052 6 C -0.139 4.139 7 C -0.014 4.014 8 C -0.207 4.207 9 C 0.179 3.821 10 O -0.330 6.330 11 C 0.067 3.933 12 C -0.102 4.102 13 C 0.031 3.969 14 C -0.550 4.550 15 H 0.054 0.946 16 C 0.007 3.993 17 N -0.927 5.927 18 Si 0.960 3.040 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.270 1.270 22 H 0.178 0.822 23 H 0.187 0.813 24 H 0.161 0.839 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.006 0.994 30 H 0.006 0.994 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.100 15.402 15.249 22.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.039 4.039 3 C -0.095 4.095 4 C 0.007 3.993 5 Cl -0.023 7.023 6 C -0.157 4.157 7 C -0.032 4.032 8 C -0.226 4.226 9 C 0.129 3.871 10 O -0.243 6.243 11 C -0.006 4.006 12 C -0.140 4.140 13 C -0.006 4.006 14 C -0.588 4.588 15 H 0.073 0.927 16 C -0.192 4.192 17 N -0.566 5.566 18 Si 0.784 3.216 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.195 1.195 22 H 0.195 0.805 23 H 0.204 0.796 24 H 0.178 0.822 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.175 15.363 15.208 22.228 hybrid contribution -0.366 -0.760 -0.750 1.129 sum 4.809 14.603 14.458 21.105 Atomic orbital electron populations 1.81165 1.13054 1.09408 1.09458 1.25558 0.92764 0.92813 0.92811 1.15208 0.83828 1.04977 1.05531 1.20792 0.93328 0.92415 0.92744 1.98410 1.77471 1.62570 1.63841 1.21336 0.89679 1.02343 1.02368 1.21646 1.02633 0.89480 0.89481 1.21723 0.90928 1.04899 1.05004 1.19081 0.91670 0.88118 0.88238 1.86076 1.38035 1.49800 1.50344 1.23123 0.94066 0.91655 0.91805 1.21471 0.98434 0.96986 0.97063 1.18885 0.94711 0.93468 0.93504 1.21611 0.93619 1.21577 1.21983 0.92744 1.25853 0.96576 0.98418 0.98351 1.70039 1.11950 1.37224 1.37434 0.85583 0.78738 0.78624 0.78625 1.19491 1.20486 1.19479 0.80484 0.79573 0.82180 0.89904 0.89894 0.92852 0.92849 0.97549 0.97540 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -16.01 18.54 19.00 0.35 -15.66 16 2 C 0.27 8.49 13.93 88.33 1.23 9.72 16 3 C -0.09 -2.21 5.75 -21.18 -0.12 -2.33 16 4 C 0.04 0.66 6.35 22.60 0.14 0.81 16 5 Cl -0.05 -0.97 28.03 -2.72 -0.08 -1.04 16 6 C -0.14 -1.50 9.81 22.26 0.22 -1.28 16 7 C -0.01 -0.13 10.03 22.30 0.22 0.09 16 8 C -0.21 -3.37 9.03 22.34 0.20 -3.16 16 9 C 0.18 4.32 6.69 22.83 0.15 4.48 16 10 O -0.33 -10.17 9.57 -90.27 -0.86 -11.04 16 11 C 0.07 2.03 4.74 71.98 0.34 2.37 16 12 C -0.10 -4.07 5.52 30.60 0.17 -3.90 16 13 C 0.03 1.55 4.97 29.85 0.15 1.70 16 14 C -0.55 -30.72 9.11 25.60 0.23 -30.49 16 15 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 16 C 0.01 0.37 5.46 84.66 0.46 0.83 16 17 N -0.93 -54.16 13.29 21.45 0.28 -53.88 16 18 Si 0.96 43.64 29.54 68.60 2.03 45.66 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H 0.18 0.80 8.06 -2.91 -0.02 0.77 16 23 H 0.19 0.28 8.06 -2.91 -0.02 0.26 16 24 H 0.16 2.26 6.29 -2.91 -0.02 2.24 16 25 H 0.08 2.21 7.67 -2.39 -0.02 2.19 16 26 H 0.08 2.21 7.66 -2.39 -0.02 2.19 16 27 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -68.08 298.02 6.27 -61.80 By element: Atomic # 1 Polarization: -5.83 SS G_CDS: 1.15 Total: -4.68 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 3.40 Total: -21.16 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: 0.64 Total: -69.54 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -0.86 Total: -11.04 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.04 kcal Total: -68.08 6.27 -61.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128931407.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.271 kcal (2) G-P(sol) polarization free energy of solvation -68.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds