Wall clock time and date at job start Mon Mar 30 2020 06:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42894 * 109.47094 * 2 1 4 4 C 1.35638 * 116.99841 * 179.97438 * 3 2 1 5 5 C 1.40438 * 120.16164 * 270.23135 * 4 3 2 6 6 C 1.47534 * 120.20657 * 0.02562 * 5 4 3 7 7 O 1.21809 * 119.99927 * 0.23401 * 6 5 4 8 8 C 1.41826 * 120.00154 * 180.22864 * 6 5 4 9 9 H 1.08006 * 120.00016 * 353.21994 * 8 6 5 10 10 C 1.40321 * 120.00250 * 173.21169 * 8 6 5 11 11 N 1.30546 * 119.99831 * 6.10734 * 10 8 6 12 12 Si 1.86798 * 120.00408 * 186.10577 * 10 8 6 13 13 H 1.48498 * 109.47173 * 94.98785 * 12 10 8 14 14 H 1.48499 * 109.47024 * 214.99014 * 12 10 8 15 15 H 1.48503 * 109.47004 * 334.98894 * 12 10 8 16 16 C 1.39806 * 119.58817 * 180.25499 * 5 4 3 17 17 C 1.37746 * 119.90153 * 359.76504 * 16 5 4 18 18 C 1.38641 * 120.32173 * 0.02562 * 17 16 5 19 19 C 1.38129 * 120.41408 * 359.97438 * 18 17 16 20 20 N 1.48026 * 119.95237 * 179.97438 * 19 18 17 21 21 O 1.21797 * 119.99709 * 0.02562 * 20 19 18 22 22 O 1.21796 * 119.99812 * 179.72173 * 20 19 18 23 23 H 1.09004 * 109.47337 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47295 * 299.99943 * 1 2 3 25 25 H 1.08998 * 109.46745 * 59.99966 * 1 2 3 26 26 H 1.09004 * 109.46762 * 239.99661 * 2 1 3 27 27 H 1.09003 * 109.46717 * 120.00508 * 2 1 3 28 28 H 0.96996 * 120.00044 * 179.97438 * 11 10 8 29 29 H 1.08003 * 120.04721 * 179.79301 * 16 5 4 30 30 H 1.08002 * 119.83488 * 179.97438 * 17 16 5 31 31 H 1.07999 * 119.79233 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3510 1.5249 0.0005 5 6 4.0507 1.6127 1.2151 6 6 3.3278 1.5116 2.4972 7 8 2.1208 1.3473 2.5045 8 6 4.0380 1.6057 3.7211 9 1 5.1175 1.6411 3.7177 10 6 3.3384 1.6529 4.9366 11 7 2.0431 1.4905 4.9508 12 14 4.2602 1.9479 6.5342 13 1 4.2257 3.3950 6.8656 14 1 3.6174 1.1744 7.6267 15 1 5.6705 1.5089 6.3803 16 6 5.4359 1.8012 1.2016 17 6 6.1046 1.8946 0.0010 18 6 5.4106 1.8031 -1.1957 19 6 4.0419 1.6168 -1.1978 20 7 3.3111 1.5211 -2.4815 21 8 3.9167 1.6060 -3.5348 22 8 2.1050 1.3517 -2.4843 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.5595 1.5228 5.7910 29 1 5.9809 1.8731 2.1313 30 1 7.1747 2.0407 -0.0081 31 1 5.9435 1.8779 -2.1321 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137554660.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:39 Heat of formation + Delta-G solvation = -57.481931 kcal Electronic energy + Delta-G solvation = -20231.436013 eV Core-core repulsion = 16867.885019 eV Total energy + Delta-G solvation = -3363.550994 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.79664 -39.60474 -37.22231 -36.45062 -36.00595 -32.88995 -31.75785 -31.31389 -29.43427 -27.15657 -25.87309 -23.45706 -22.62806 -21.69908 -20.29782 -18.70675 -18.21120 -17.41101 -17.14580 -16.28409 -15.77719 -15.59309 -14.98507 -14.42667 -14.14904 -13.81502 -13.08920 -12.71513 -12.42502 -12.07194 -11.85276 -11.78467 -11.58142 -11.30232 -11.17144 -11.15781 -10.90179 -10.75645 -10.63803 -10.55100 -10.41935 -9.33561 -9.22349 -9.06257 -8.43783 -7.68502 -6.53442 -5.13669 0.25545 1.12646 1.74580 1.82881 2.90770 3.00220 3.02898 3.37111 3.82960 3.97392 4.31016 4.72992 5.01973 5.17205 5.34935 5.38178 5.49537 5.59566 5.74792 5.84641 5.92286 6.11048 6.17262 6.32191 6.49928 6.53843 6.65393 6.70510 6.88177 7.01145 7.75297 7.91859 8.09024 8.52589 8.55960 10.07063 10.27728 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.024914 B = 0.006815 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.602992 B = 4107.820456 C = 5134.014845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.091 3.909 3 O -0.298 6.298 4 C 0.191 3.809 5 C -0.125 4.125 6 C 0.383 3.617 7 O -0.511 6.511 8 C -0.513 4.513 9 H 0.075 0.925 10 C 0.079 3.921 11 N -0.727 5.727 12 Si 0.909 3.091 13 H -0.268 1.268 14 H -0.275 1.275 15 H -0.260 1.260 16 C -0.036 4.036 17 C -0.141 4.141 18 C -0.061 4.061 19 C -0.086 4.086 20 N 0.038 4.962 21 O -0.194 6.194 22 O -0.143 6.143 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.035 0.965 27 H 0.059 0.941 28 H 0.277 0.723 29 H 0.152 0.848 30 H 0.142 0.858 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.964 -1.400 -4.870 7.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.017 3.983 3 O -0.214 6.214 4 C 0.144 3.856 5 C -0.128 4.128 6 C 0.277 3.723 7 O -0.398 6.398 8 C -0.544 4.544 9 H 0.093 0.907 10 C -0.145 4.145 11 N -0.355 5.355 12 Si 0.733 3.267 13 H -0.193 1.193 14 H -0.200 1.200 15 H -0.184 1.184 16 C -0.054 4.054 17 C -0.159 4.159 18 C -0.080 4.080 19 C -0.170 4.170 20 N 0.554 4.446 21 O -0.402 6.402 22 O -0.364 6.364 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.170 0.830 30 H 0.160 0.840 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.413 -1.321 -4.251 7.008 hybrid contribution 0.677 0.115 0.323 0.759 sum 6.090 -1.206 -3.927 7.346 Atomic orbital electron populations 1.21633 0.92990 1.01684 1.03552 1.22456 0.96043 0.80616 0.99164 1.85945 1.14194 1.27695 1.93542 1.18823 0.84992 0.92806 0.88984 1.22770 0.94442 0.98255 0.97330 1.17949 0.88752 0.81036 0.84542 1.90584 1.14899 1.46851 1.87467 1.20871 0.94915 1.47136 0.91463 0.90672 1.25966 0.94724 0.92937 1.00906 1.69940 1.07890 1.29452 1.28202 0.86307 0.80516 0.79312 0.80601 1.19316 1.19980 1.18427 1.21993 0.93689 0.90917 0.98834 1.21143 1.00596 1.03150 0.91041 1.20899 0.90411 0.96121 1.00560 1.21746 0.93351 1.19163 0.82783 1.43495 1.01231 0.97330 1.02504 1.94456 1.69768 1.55580 1.20349 1.94562 0.96395 1.51179 1.94274 0.91479 0.90837 0.91852 0.94709 0.92293 0.91150 0.83037 0.84034 0.83560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 10.28 37.16 0.38 -2.08 16 2 C 0.09 1.82 5.45 37.16 0.20 2.02 16 3 O -0.30 -6.83 6.89 -49.62 -0.34 -7.17 16 4 C 0.19 4.11 5.72 -38.61 -0.22 3.89 16 5 C -0.13 -2.71 5.90 -104.69 -0.62 -3.33 16 6 C 0.38 9.94 6.90 -34.42 -0.24 9.70 16 7 O -0.51 -14.85 12.57 -16.74 -0.21 -15.06 16 8 C -0.51 -12.74 8.83 -37.43 -0.33 -13.07 16 9 H 0.08 1.64 6.07 -52.48 -0.32 1.32 16 10 C 0.08 1.95 5.49 -17.32 -0.10 1.86 16 11 N -0.73 -19.43 11.76 55.57 0.65 -18.78 16 12 Si 0.91 17.74 29.57 -169.99 -5.03 12.71 16 13 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 14 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 15 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 16 C -0.04 -0.61 9.43 -39.17 -0.37 -0.98 16 17 C -0.14 -1.93 10.02 -39.61 -0.40 -2.33 16 18 C -0.06 -0.92 9.55 -39.47 -0.38 -1.30 16 19 C -0.09 -1.64 6.86 -79.84 -0.55 -2.18 16 20 N 0.04 0.74 4.45 34.02 0.15 0.89 16 21 O -0.19 -3.63 18.44 -29.46 -0.54 -4.18 16 22 O -0.14 -2.96 16.03 -36.49 -0.58 -3.54 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.03 0.65 7.46 -51.93 -0.39 0.26 16 27 H 0.06 1.27 7.48 -51.93 -0.39 0.88 16 28 H 0.28 6.66 8.29 -40.82 -0.34 6.32 16 29 H 0.15 2.31 6.22 -52.48 -0.33 1.98 16 30 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.15 1.85 7.59 -52.49 -0.40 1.46 16 LS Contribution 281.07 15.07 4.24 4.24 Total: -1.00 -30.58 281.07 -6.92 -37.50 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -2.64 Total: 1.18 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -2.61 Total: -7.80 kcal Atomic # 7 Polarization: -18.69 SS G_CDS: 0.81 Total: -17.88 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -1.68 Total: -29.95 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.58 -6.92 -37.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137554660.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.979 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds