Wall clock time and date at job start Mon Mar 30 2020 06:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42894 * 109.47094 * 2 1 4 4 C 1.35638 * 116.99841 * 179.97438 * 3 2 1 5 5 C 1.40438 * 120.16164 * 270.23135 * 4 3 2 6 6 C 1.47534 * 120.20657 * 0.02562 * 5 4 3 7 7 O 1.21809 * 119.99927 * 0.23401 * 6 5 4 8 8 C 1.41826 * 120.00154 * 180.22864 * 6 5 4 9 9 H 1.08006 * 120.00016 * 353.21994 * 8 6 5 10 10 C 1.40321 * 120.00250 * 173.21169 * 8 6 5 11 11 N 1.30546 * 119.99831 * 6.10734 * 10 8 6 12 12 Si 1.86798 * 120.00408 * 186.10577 * 10 8 6 13 13 H 1.48498 * 109.47173 * 94.98785 * 12 10 8 14 14 H 1.48499 * 109.47024 * 214.99014 * 12 10 8 15 15 H 1.48503 * 109.47004 * 334.98894 * 12 10 8 16 16 C 1.39806 * 119.58817 * 180.25499 * 5 4 3 17 17 C 1.37746 * 119.90153 * 359.76504 * 16 5 4 18 18 C 1.38641 * 120.32173 * 0.02562 * 17 16 5 19 19 C 1.38129 * 120.41408 * 359.97438 * 18 17 16 20 20 N 1.48026 * 119.95237 * 179.97438 * 19 18 17 21 21 O 1.21797 * 119.99709 * 0.02562 * 20 19 18 22 22 O 1.21796 * 119.99812 * 179.72173 * 20 19 18 23 23 H 1.09004 * 109.47337 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47295 * 299.99943 * 1 2 3 25 25 H 1.08998 * 109.46745 * 59.99966 * 1 2 3 26 26 H 1.09004 * 109.46762 * 239.99661 * 2 1 3 27 27 H 1.09003 * 109.46717 * 120.00508 * 2 1 3 28 28 H 0.96996 * 120.00044 * 179.97438 * 11 10 8 29 29 H 1.08003 * 120.04721 * 179.79301 * 16 5 4 30 30 H 1.08002 * 119.83488 * 179.97438 * 17 16 5 31 31 H 1.07999 * 119.79233 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3510 1.5249 0.0005 5 6 4.0507 1.6127 1.2151 6 6 3.3278 1.5116 2.4972 7 8 2.1208 1.3473 2.5045 8 6 4.0380 1.6057 3.7211 9 1 5.1175 1.6411 3.7177 10 6 3.3384 1.6529 4.9366 11 7 2.0431 1.4905 4.9508 12 14 4.2602 1.9479 6.5342 13 1 4.2257 3.3950 6.8656 14 1 3.6174 1.1744 7.6267 15 1 5.6705 1.5089 6.3803 16 6 5.4359 1.8012 1.2016 17 6 6.1046 1.8946 0.0010 18 6 5.4106 1.8031 -1.1957 19 6 4.0419 1.6168 -1.1978 20 7 3.3111 1.5211 -2.4815 21 8 3.9167 1.6060 -3.5348 22 8 2.1050 1.3517 -2.4843 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.5595 1.5228 5.7910 29 1 5.9809 1.8731 2.1313 30 1 7.1747 2.0407 -0.0081 31 1 5.9435 1.8779 -2.1321 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137554660.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:38 Heat of formation + Delta-G solvation = -74.937846 kcal Electronic energy + Delta-G solvation = -20232.192958 eV Core-core repulsion = 16867.885019 eV Total energy + Delta-G solvation = -3364.307939 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.083 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.29411 -41.12649 -38.73913 -38.27426 -37.51689 -34.78623 -33.22320 -32.82622 -30.91482 -28.98296 -27.34805 -25.03747 -24.15212 -23.18015 -21.93626 -20.26146 -19.75016 -18.91003 -18.65833 -18.07900 -17.33260 -17.21838 -16.43083 -15.91064 -15.70505 -15.38646 -14.76695 -14.37424 -13.87020 -13.49654 -13.41915 -13.28458 -13.19385 -12.79459 -12.76146 -12.67664 -12.44547 -12.32227 -12.26666 -12.07712 -11.99576 -11.03567 -10.91939 -10.50474 -9.91801 -9.59689 -8.37849 -7.09385 -1.18930 -0.29406 0.30080 0.38403 1.37728 1.40314 1.56505 1.95617 2.19244 2.38940 2.66159 3.33596 3.61516 3.73807 3.93347 3.97668 4.01810 4.11783 4.20582 4.33370 4.49555 4.73689 4.80701 4.94215 5.00876 5.15334 5.18657 5.22305 5.22962 5.50746 5.90677 6.36621 6.58388 6.66069 6.71304 8.21148 8.45239 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.024914 B = 0.006815 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.602992 B = 4107.820456 C = 5134.014845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.094 3.906 3 O -0.326 6.326 4 C 0.162 3.838 5 C -0.166 4.166 6 C 0.361 3.639 7 O -0.562 6.562 8 C -0.537 4.537 9 H 0.105 0.895 10 C 0.025 3.975 11 N -0.784 5.784 12 Si 0.994 3.006 13 H -0.264 1.264 14 H -0.274 1.274 15 H -0.238 1.238 16 C -0.023 4.023 17 C -0.111 4.111 18 C -0.039 4.039 19 C -0.102 4.102 20 N 0.038 4.962 21 O -0.155 6.155 22 O -0.197 6.197 23 H 0.099 0.901 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.030 0.970 28 H 0.282 0.718 29 H 0.171 0.829 30 H 0.204 0.796 31 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.144 -0.979 -5.393 11.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.021 3.979 3 O -0.242 6.242 4 C 0.115 3.885 5 C -0.168 4.168 6 C 0.258 3.742 7 O -0.453 6.453 8 C -0.567 4.567 9 H 0.123 0.877 10 C -0.195 4.195 11 N -0.413 5.413 12 Si 0.812 3.188 13 H -0.189 1.189 14 H -0.199 1.199 15 H -0.160 1.160 16 C -0.042 4.042 17 C -0.129 4.129 18 C -0.058 4.058 19 C -0.186 4.186 20 N 0.552 4.448 21 O -0.374 6.374 22 O -0.404 6.404 23 H 0.117 0.883 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.188 0.812 30 H 0.221 0.779 31 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 9.506 -0.917 -4.741 10.662 hybrid contribution -0.438 0.000 0.325 0.546 sum 9.067 -0.917 -4.416 10.127 Atomic orbital electron populations 1.21623 0.91491 1.03476 1.02449 1.22464 0.97303 0.80046 0.98120 1.85901 1.15846 1.28756 1.93746 1.19063 0.84671 0.94525 0.90259 1.22409 0.96601 1.02279 0.95516 1.18635 0.88615 0.79979 0.86979 1.90538 1.17043 1.48907 1.88827 1.21419 0.96487 1.47144 0.91646 0.87697 1.27218 0.95393 0.91647 1.05212 1.70105 1.10343 1.31245 1.29558 0.85045 0.79767 0.79125 0.74813 1.18871 1.19913 1.16023 1.22267 0.91483 0.89062 1.01339 1.21736 1.03003 0.99530 0.88634 1.21531 0.88521 0.92770 1.02945 1.21910 0.94605 1.20555 0.81540 1.43622 1.01209 0.97109 1.02845 1.94403 1.69423 1.53105 1.20508 1.94587 0.97034 1.54262 1.94510 0.88256 0.93589 0.91039 0.93538 0.95141 0.90799 0.81179 0.77933 0.79739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 10.28 71.98 0.74 -4.24 16 2 C 0.09 4.05 5.45 71.98 0.39 4.45 16 3 O -0.33 -15.94 6.89 -59.86 -0.41 -16.35 16 4 C 0.16 7.13 5.72 22.90 0.13 7.26 16 5 C -0.17 -7.24 5.90 -19.91 -0.12 -7.36 16 6 C 0.36 19.57 6.90 25.61 0.18 19.74 16 7 O -0.56 -35.17 12.57 16.17 0.20 -34.96 16 8 C -0.54 -26.98 8.83 23.66 0.21 -26.77 16 9 H 0.11 4.40 6.07 -2.91 -0.02 4.38 16 10 C 0.02 1.24 5.49 85.39 0.47 1.71 16 11 N -0.78 -44.04 11.76 21.88 0.26 -43.78 16 12 Si 0.99 36.02 29.57 68.60 2.03 38.05 16 13 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 14 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 15 H -0.24 -7.67 7.11 99.48 0.71 -6.96 16 16 C -0.02 -0.72 9.43 22.53 0.21 -0.50 16 17 C -0.11 -2.41 10.02 22.25 0.22 -2.18 16 18 C -0.04 -0.99 9.55 22.34 0.21 -0.78 16 19 C -0.10 -3.72 6.86 36.44 0.25 -3.47 16 20 N 0.04 1.44 4.45 -46.29 -0.21 1.23 16 21 O -0.16 -5.37 18.44 18.89 0.35 -5.02 16 22 O -0.20 -8.32 16.03 25.62 0.41 -7.91 16 23 H 0.10 2.96 8.14 -2.38 -0.02 2.94 16 24 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.05 1.83 7.46 -2.38 -0.02 1.81 16 27 H 0.03 1.44 7.48 -2.39 -0.02 1.42 16 28 H 0.28 14.25 8.29 -92.71 -0.77 13.48 16 29 H 0.17 4.51 6.22 -2.91 -0.02 4.49 16 30 H 0.20 2.09 8.06 -2.91 -0.02 2.06 16 31 H 0.19 3.40 7.59 -2.91 -0.02 3.38 16 Total: -1.00 -73.89 281.07 6.71 -67.18 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 1.18 Total: 13.72 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 2.90 Total: -12.15 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.05 Total: -42.55 kcal Atomic # 8 Polarization: -64.80 SS G_CDS: 0.55 Total: -64.25 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.05 kcal Total: -73.89 6.71 -67.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137554660.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.759 kcal (2) G-P(sol) polarization free energy of solvation -73.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds