Wall clock time and date at job start Mon Mar 30 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86803 * 119.99838 * 2 1 4 4 H 1.48500 * 109.47255 * 274.98817 * 3 2 1 5 5 H 1.48498 * 109.47027 * 34.98763 * 3 2 1 6 6 H 1.48502 * 109.47268 * 154.98796 * 3 2 1 7 7 C 1.40045 * 120.00526 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00412 * 186.15045 * 7 2 1 9 9 C 1.46376 * 119.99754 * 6.14261 * 7 2 1 10 10 O 1.21680 * 120.00097 * 353.94712 * 9 7 2 11 11 N 1.34776 * 119.99835 * 174.21876 * 9 7 2 12 12 C 1.46497 * 119.99869 * 179.72770 * 11 9 7 13 13 H 1.08996 * 110.27099 * 35.61949 * 12 11 9 14 14 C 1.54344 * 110.30439 * 157.79700 * 12 11 9 15 15 C 1.54342 * 102.39584 * 145.27142 * 14 12 11 16 16 C 1.51371 * 105.17001 * 333.65019 * 15 14 12 17 17 C 1.38475 * 130.37605 * 197.17938 * 16 15 14 18 18 C 1.38220 * 120.20714 * 180.02562 * 17 16 15 19 19 Cl 1.73595 * 120.04841 * 180.02562 * 18 17 16 20 20 C 1.38370 * 119.90256 * 0.02562 * 18 17 16 21 21 C 1.38089 * 119.92364 * 359.97438 * 20 18 17 22 22 C 1.38232 * 109.75651 * 17.19394 * 16 15 14 23 23 H 0.96998 * 119.99932 * 359.97438 * 1 2 3 24 24 H 0.96998 * 120.00266 * 359.72331 * 11 9 7 25 25 H 1.09001 * 110.82530 * 263.50011 * 14 12 11 26 26 H 1.09001 * 110.82421 * 27.04600 * 14 12 11 27 27 H 1.08998 * 110.30648 * 214.72331 * 15 14 12 28 28 H 1.09007 * 110.30017 * 92.57079 * 15 14 12 29 29 H 1.08001 * 119.89963 * 0.02562 * 17 16 15 30 30 H 1.08000 * 120.04327 * 180.02562 * 20 18 17 31 31 H 1.07997 * 119.88269 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1074 -1.3948 5 1 1.4948 2.6199 0.8028 6 1 3.5870 1.4122 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0824 -1.2155 0.0997 9 6 1.2815 -2.4767 -0.1368 10 8 0.0647 -2.4827 -0.1387 11 7 1.9613 -3.6346 -0.2545 12 6 1.2351 -4.9002 -0.3848 13 1 0.3268 -4.7559 -0.9696 14 6 2.1343 -5.9682 -1.0430 15 6 1.6864 -7.2625 -0.3314 16 6 1.1564 -6.8124 1.0131 17 6 0.9197 -7.5336 2.1712 18 6 0.4249 -6.9005 3.2959 19 17 0.1304 -7.8086 4.7458 20 6 0.1647 -5.5419 3.2644 21 6 0.4005 -4.8220 2.1098 22 6 0.8970 -5.4549 0.9824 23 1 -0.4850 0.8400 0.0004 24 1 2.9312 -3.6299 -0.2530 25 1 1.9430 -6.0290 -2.1144 26 1 3.1867 -5.7628 -0.8473 27 1 2.5348 -7.9338 -0.1980 28 1 0.8994 -7.7552 -0.9025 29 1 1.1224 -8.5942 2.1959 30 1 -0.2215 -5.0448 4.1420 31 1 0.1968 -3.7616 2.0858 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153654922.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:23 Heat of formation + Delta-G solvation = -29.330595 kcal Electronic energy + Delta-G solvation = -17303.648176 eV Core-core repulsion = 14382.027080 eV Total energy + Delta-G solvation = -2921.621096 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.03010 -37.35020 -36.47101 -35.08373 -32.76678 -32.04833 -30.40000 -28.65540 -26.99062 -25.26325 -22.58824 -20.93459 -20.68734 -19.50623 -17.30594 -16.34918 -15.65292 -15.42453 -15.11550 -14.86486 -14.04180 -13.71754 -13.38518 -13.14118 -12.97931 -12.35405 -12.07046 -11.89425 -11.59951 -11.44859 -11.26015 -11.15277 -11.01232 -10.92096 -10.52094 -10.46282 -10.44374 -10.22272 -8.89151 -8.59985 -8.23496 -7.65510 -7.60149 -6.23627 -4.68060 1.41896 1.56729 2.25478 3.11498 3.19358 3.22474 3.87686 4.08579 4.51068 4.59784 4.73496 4.93832 5.12388 5.29519 5.37303 5.39816 5.56661 5.73692 5.85583 5.90230 5.98145 6.05728 6.09235 6.35106 6.42700 6.51203 6.65580 6.97183 7.13332 7.40120 7.87150 8.03287 8.28828 8.98944 9.47170 10.54729 10.72883 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025177 B = 0.005119 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.846834 B = 5468.946244 C = 6234.170947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.089 3.911 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.578 6.578 11 N -0.758 5.758 12 C 0.189 3.811 13 H 0.094 0.906 14 C -0.124 4.124 15 C -0.075 4.075 16 C -0.095 4.095 17 C -0.108 4.108 18 C -0.039 4.039 19 Cl -0.085 7.085 20 C -0.116 4.116 21 C -0.067 4.067 22 C -0.082 4.082 23 H 0.268 0.732 24 H 0.382 0.618 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.124 0.876 30 H 0.130 0.870 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.819 -12.958 2.545 13.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.460 6.460 11 N -0.412 5.412 12 C 0.082 3.918 13 H 0.111 0.889 14 C -0.162 4.162 15 C -0.112 4.112 16 C -0.096 4.096 17 C -0.127 4.127 18 C -0.065 4.065 19 Cl -0.056 7.056 20 C -0.135 4.135 21 C -0.086 4.086 22 C -0.084 4.084 23 H 0.079 0.921 24 H 0.214 0.786 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.142 0.858 30 H 0.148 0.852 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.710 -12.910 2.662 13.457 hybrid contribution 0.831 0.739 0.290 1.150 sum 3.542 -12.170 2.952 13.015 Atomic orbital electron populations 1.70014 1.07036 1.27307 1.35147 1.25680 0.94577 1.00240 0.92573 0.86388 0.80287 0.81582 0.78693 1.19805 1.20457 1.18898 1.20889 0.94142 0.89599 1.53685 0.91436 1.18240 0.87216 0.82354 0.76304 1.90607 1.13927 1.86351 1.55166 1.46256 1.08486 1.04976 1.81444 1.20090 0.96255 0.84970 0.90463 0.88870 1.22590 1.00083 0.93576 0.99982 1.20986 1.00464 0.97945 0.91841 1.20480 0.99967 0.94435 0.94755 1.20275 1.01627 0.99721 0.91055 1.20653 1.05338 0.92446 0.88080 1.98334 1.94893 1.74916 1.37503 1.20982 1.01484 0.91829 0.99165 1.20907 0.95591 1.01327 0.90732 1.21360 0.96347 0.93760 0.96911 0.92094 0.78612 0.90144 0.90534 0.90708 0.90039 0.85759 0.85218 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.38 11.85 55.55 0.66 -21.72 16 2 C 0.09 2.43 5.49 -17.37 -0.10 2.33 16 3 Si 0.91 19.76 29.56 -169.99 -5.03 14.73 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.55 -14.94 9.53 -35.63 -0.34 -15.28 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.29 16 9 C 0.55 14.98 7.20 -12.99 -0.09 14.88 16 10 O -0.58 -17.67 14.18 5.21 0.07 -17.60 16 11 N -0.76 -16.08 5.11 -55.34 -0.28 -16.36 16 12 C 0.19 3.47 3.17 -68.05 -0.22 3.26 16 13 H 0.09 1.94 7.64 -51.93 -0.40 1.54 16 14 C -0.12 -1.65 6.75 -25.32 -0.17 -1.82 16 15 C -0.07 -0.89 6.77 -26.85 -0.18 -1.07 16 16 C -0.10 -1.43 6.14 -104.21 -0.64 -2.07 16 17 C -0.11 -1.53 9.82 -39.50 -0.39 -1.92 16 18 C -0.04 -0.58 6.32 -39.54 -0.25 -0.83 16 19 Cl -0.09 -1.11 28.96 -51.86 -1.50 -2.61 16 20 C -0.12 -1.91 9.83 -39.59 -0.39 -2.30 16 21 C -0.07 -1.29 9.86 -39.54 -0.39 -1.68 16 22 C -0.08 -1.48 5.78 -104.20 -0.60 -2.08 16 23 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 24 H 0.38 7.19 8.36 -40.82 -0.34 6.85 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.08 0.95 7.80 -51.93 -0.41 0.54 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 31 H 0.14 3.17 7.07 -52.49 -0.37 2.80 16 LS Contribution 285.23 15.07 4.30 4.30 Total: -1.00 -31.71 285.23 -8.71 -40.42 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -3.17 Total: 7.44 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -3.76 Total: -8.59 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.38 Total: -38.08 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: 0.07 Total: -17.60 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.73 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.50 Total: -2.61 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.71 -8.71 -40.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153654922.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.089 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds