Wall clock time and date at job start Mon Mar 30 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86803 * 119.99838 * 2 1 4 4 H 1.48500 * 109.47255 * 274.98817 * 3 2 1 5 5 H 1.48498 * 109.47027 * 34.98763 * 3 2 1 6 6 H 1.48502 * 109.47268 * 154.98796 * 3 2 1 7 7 C 1.40045 * 120.00526 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00412 * 186.15045 * 7 2 1 9 9 C 1.46376 * 119.99754 * 6.14261 * 7 2 1 10 10 O 1.21680 * 120.00097 * 353.94712 * 9 7 2 11 11 N 1.34776 * 119.99835 * 174.21876 * 9 7 2 12 12 C 1.46497 * 119.99869 * 179.72770 * 11 9 7 13 13 H 1.08996 * 110.27099 * 35.61949 * 12 11 9 14 14 C 1.54344 * 110.30439 * 157.79700 * 12 11 9 15 15 C 1.54342 * 102.39584 * 145.27142 * 14 12 11 16 16 C 1.51371 * 105.17001 * 333.65019 * 15 14 12 17 17 C 1.38475 * 130.37605 * 197.17938 * 16 15 14 18 18 C 1.38220 * 120.20714 * 180.02562 * 17 16 15 19 19 Cl 1.73595 * 120.04841 * 180.02562 * 18 17 16 20 20 C 1.38370 * 119.90256 * 0.02562 * 18 17 16 21 21 C 1.38089 * 119.92364 * 359.97438 * 20 18 17 22 22 C 1.38232 * 109.75651 * 17.19394 * 16 15 14 23 23 H 0.96998 * 119.99932 * 359.97438 * 1 2 3 24 24 H 0.96998 * 120.00266 * 359.72331 * 11 9 7 25 25 H 1.09001 * 110.82530 * 263.50011 * 14 12 11 26 26 H 1.09001 * 110.82421 * 27.04600 * 14 12 11 27 27 H 1.08998 * 110.30648 * 214.72331 * 15 14 12 28 28 H 1.09007 * 110.30017 * 92.57079 * 15 14 12 29 29 H 1.08001 * 119.89963 * 0.02562 * 17 16 15 30 30 H 1.08000 * 120.04327 * 180.02562 * 20 18 17 31 31 H 1.07997 * 119.88269 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1074 -1.3948 5 1 1.4948 2.6199 0.8028 6 1 3.5870 1.4122 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0824 -1.2155 0.0997 9 6 1.2815 -2.4767 -0.1368 10 8 0.0647 -2.4827 -0.1387 11 7 1.9613 -3.6346 -0.2545 12 6 1.2351 -4.9002 -0.3848 13 1 0.3268 -4.7559 -0.9696 14 6 2.1343 -5.9682 -1.0430 15 6 1.6864 -7.2625 -0.3314 16 6 1.1564 -6.8124 1.0131 17 6 0.9197 -7.5336 2.1712 18 6 0.4249 -6.9005 3.2959 19 17 0.1304 -7.8086 4.7458 20 6 0.1647 -5.5419 3.2644 21 6 0.4005 -4.8220 2.1098 22 6 0.8970 -5.4549 0.9824 23 1 -0.4850 0.8400 0.0004 24 1 2.9312 -3.6299 -0.2530 25 1 1.9430 -6.0290 -2.1144 26 1 3.1867 -5.7628 -0.8473 27 1 2.5348 -7.9338 -0.1980 28 1 0.8994 -7.7552 -0.9025 29 1 1.1224 -8.5942 2.1959 30 1 -0.2215 -5.0448 4.1420 31 1 0.1968 -3.7616 2.0858 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153654922.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:23 Heat of formation + Delta-G solvation = -49.832449 kcal Electronic energy + Delta-G solvation = -17304.537203 eV Core-core repulsion = 14382.027080 eV Total energy + Delta-G solvation = -2922.510123 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.34154 -39.13470 -37.78937 -36.43727 -34.71191 -33.84349 -31.81864 -29.86906 -28.80239 -26.87423 -23.83377 -22.50956 -21.92531 -21.23895 -19.19097 -17.73101 -17.41821 -16.95437 -16.44640 -16.23006 -15.81419 -15.20192 -14.87366 -14.38853 -14.29240 -14.13037 -13.74040 -13.23308 -12.97156 -12.87598 -12.67190 -12.61788 -12.44446 -12.42432 -12.26100 -12.00103 -11.71582 -11.61843 -10.93397 -9.86543 -9.85245 -9.50558 -9.40491 -8.29172 -6.84209 0.13352 0.29160 1.07303 1.39452 1.40046 1.55718 2.24042 2.47452 2.58529 3.18478 3.43417 3.53877 3.79863 3.95121 4.11190 4.21091 4.22366 4.36639 4.59809 4.72119 4.79231 4.92911 5.02282 5.13766 5.19284 5.24591 5.32448 5.37628 5.64336 5.80775 5.89965 6.24956 6.30682 6.88071 7.56970 8.51250 8.68698 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025177 B = 0.005119 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.846834 B = 5468.946244 C = 6234.170947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.032 3.968 3 Si 0.993 3.007 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.250 1.250 7 C -0.576 4.576 8 H 0.084 0.916 9 C 0.543 3.457 10 O -0.625 6.625 11 N -0.746 5.746 12 C 0.180 3.820 13 H 0.056 0.944 14 C -0.112 4.112 15 C -0.066 4.066 16 C -0.083 4.083 17 C -0.098 4.098 18 C -0.037 4.037 19 Cl -0.062 7.062 20 C -0.122 4.122 21 C -0.097 4.097 22 C -0.112 4.112 23 H 0.273 0.727 24 H 0.395 0.605 25 H 0.098 0.902 26 H 0.091 0.909 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.162 0.838 30 H 0.135 0.865 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.066 -15.092 2.469 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.183 4.183 3 Si 0.813 3.187 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.173 1.173 7 C -0.613 4.613 8 H 0.102 0.898 9 C 0.347 3.653 10 O -0.512 6.512 11 N -0.399 5.399 12 C 0.074 3.926 13 H 0.074 0.926 14 C -0.150 4.150 15 C -0.103 4.103 16 C -0.084 4.084 17 C -0.117 4.117 18 C -0.064 4.064 19 Cl -0.033 7.033 20 C -0.141 4.141 21 C -0.116 4.116 22 C -0.113 4.113 23 H 0.083 0.917 24 H 0.229 0.771 25 H 0.116 0.884 26 H 0.109 0.891 27 H 0.130 0.870 28 H 0.120 0.880 29 H 0.179 0.821 30 H 0.153 0.847 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.000 -15.096 2.585 16.111 hybrid contribution 0.092 1.286 0.385 1.346 sum 5.092 -13.810 2.970 15.015 Atomic orbital electron populations 1.70184 1.09439 1.28801 1.36602 1.26894 0.95433 1.04750 0.91239 0.85069 0.78941 0.75496 0.79175 1.18714 1.19926 1.17311 1.21431 0.95131 0.90529 1.54187 0.89774 1.18512 0.86815 0.84124 0.75878 1.90560 1.15989 1.87482 1.57167 1.45903 1.09035 1.04978 1.79984 1.20341 0.95977 0.85032 0.91258 0.92562 1.22597 0.99571 0.92101 1.00732 1.21089 1.02270 0.97468 0.89502 1.20839 0.98436 0.92643 0.96497 1.20667 0.99758 1.01307 0.89935 1.20739 1.04387 0.91838 0.89390 1.98344 1.94714 1.74010 1.36246 1.20976 1.01815 0.92935 0.98386 1.20634 0.98491 0.99324 0.93102 1.21380 0.98020 0.95746 0.96194 0.91685 0.77112 0.88390 0.89059 0.87021 0.88029 0.82073 0.84672 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.28 11.85 21.83 0.26 -50.02 16 2 C 0.03 1.78 5.49 85.30 0.47 2.25 16 3 Si 0.99 41.10 29.56 68.60 2.03 43.12 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 7 C -0.58 -32.56 9.53 24.83 0.24 -32.32 16 8 H 0.08 4.29 7.85 -2.91 -0.02 4.27 16 9 C 0.54 31.01 7.20 86.36 0.62 31.63 16 10 O -0.63 -41.19 14.18 -4.28 -0.06 -41.25 16 11 N -0.75 -32.88 5.11 -447.21 -2.28 -35.16 16 12 C 0.18 6.79 3.17 44.91 0.14 6.93 16 13 H 0.06 2.51 7.64 -2.39 -0.02 2.49 16 14 C -0.11 -2.70 6.75 31.51 0.21 -2.49 16 15 C -0.07 -1.30 6.77 30.52 0.21 -1.09 16 16 C -0.08 -2.30 6.14 -19.60 -0.12 -2.42 16 17 C -0.10 -2.46 9.82 22.32 0.22 -2.24 16 18 C -0.04 -1.04 6.32 22.30 0.14 -0.90 16 19 Cl -0.06 -1.47 28.96 -2.72 -0.08 -1.55 16 20 C -0.12 -4.15 9.83 22.27 0.22 -3.94 16 21 C -0.10 -3.99 9.86 22.30 0.22 -3.77 16 22 C -0.11 -4.14 5.78 -19.59 -0.11 -4.25 16 23 H 0.27 15.21 8.29 -92.71 -0.77 14.44 16 24 H 0.39 15.02 8.36 -92.71 -0.78 14.24 16 25 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.09 1.95 7.80 -2.39 -0.02 1.94 16 27 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 30 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 31 H 0.09 4.55 7.07 -2.91 -0.02 4.53 16 Total: -1.00 -74.89 285.23 2.71 -72.19 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.39 Total: 25.29 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 2.45 Total: -12.61 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -2.03 Total: -85.19 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -0.06 Total: -41.25 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.55 kcal Total: -74.89 2.71 -72.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153654922.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.354 kcal (2) G-P(sol) polarization free energy of solvation -74.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds