Wall clock time and date at job start Mon Mar 30 2020 06:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36651 * 122.39949 * 2 1 4 4 N 1.37545 * 125.32664 * 359.97438 * 3 2 1 5 5 C 1.34777 * 119.99801 * 180.02562 * 4 3 2 6 6 O 1.21999 * 120.00264 * 359.97438 * 5 4 3 7 7 C 1.40405 * 120.00162 * 180.02562 * 5 4 3 8 8 H 1.07999 * 119.99796 * 359.97438 * 7 5 4 9 9 C 1.40095 * 120.00088 * 180.02562 * 7 5 4 10 10 N 1.30654 * 120.00063 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 119.99717 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47488 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47163 * 120.00132 * 11 9 7 14 14 H 1.48508 * 109.46883 * 239.99584 * 11 9 7 15 15 S 1.75708 * 109.34202 * 180.24342 * 3 2 1 16 16 C 1.75791 * 91.24329 * 359.64981 * 15 3 2 17 17 C 1.35961 * 110.30632 * 0.35804 * 16 15 3 18 18 C 1.52345 * 122.71662 * 179.71958 * 17 16 15 19 19 C 1.52975 * 108.74330 * 342.53916 * 18 17 16 20 20 C 1.53129 * 109.35193 * 51.35165 * 19 18 17 21 21 C 1.51504 * 125.13295 * 180.11010 * 16 15 3 22 22 H 1.08994 * 109.47031 * 90.02533 * 1 2 3 23 23 H 1.09002 * 109.46825 * 210.02868 * 1 2 3 24 24 H 1.09001 * 109.47267 * 330.02353 * 1 2 3 25 25 H 0.97000 * 120.00637 * 359.72434 * 4 3 2 26 26 H 0.97005 * 120.00050 * 180.02562 * 10 9 7 27 27 H 1.08996 * 109.59410 * 102.31928 * 18 17 16 28 28 H 1.09000 * 109.58838 * 222.76591 * 18 17 16 29 29 H 1.08999 * 109.49181 * 171.31577 * 19 18 17 30 30 H 1.08997 * 109.49360 * 291.38661 * 19 18 17 31 31 H 1.09008 * 109.54377 * 48.85931 * 20 19 18 32 32 H 1.09001 * 109.54847 * 169.13352 * 20 19 18 33 33 H 1.09002 * 109.60889 * 44.15340 * 21 16 15 34 34 H 1.09000 * 109.60444 * 283.65976 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2392 1.1538 0.0000 4 7 1.7178 2.4266 -0.0005 5 6 2.5426 3.4926 -0.0010 6 8 3.7515 3.3286 -0.0005 7 6 2.0105 4.7919 -0.0009 8 1 0.9403 4.9371 -0.0010 9 6 2.8677 5.8999 -0.0020 10 7 4.1624 5.7242 -0.0024 11 14 2.1597 7.6286 -0.0026 12 1 0.6766 7.5560 -0.0026 13 1 2.6205 8.3527 1.2092 14 1 2.6195 8.3513 -1.2158 15 16 3.9508 0.7568 -0.0070 16 6 3.5910 -0.9638 0.0011 17 6 2.2463 -1.1646 0.0005 18 6 1.6212 -2.5540 0.0004 19 6 2.6799 -3.5693 -0.4337 20 6 3.9422 -3.3791 0.4120 21 6 4.6252 -2.0709 0.0024 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 -0.8898 0.5143 24 1 -0.3634 0.8902 0.5135 25 1 0.7567 2.5571 -0.0049 26 1 4.7560 6.4915 -0.0028 27 1 1.2710 -2.7973 1.0035 28 1 0.7840 -2.5780 -0.6972 29 1 2.2954 -4.5792 -0.2911 30 1 2.9206 -3.4165 -1.4857 31 1 3.6711 -3.3341 1.4669 32 1 4.6228 -4.2138 0.2443 33 1 5.4155 -1.8323 0.7142 34 1 5.0490 -2.1766 -0.9963 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153885169.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:17 Heat of formation + Delta-G solvation = -36.924820 kcal Electronic energy + Delta-G solvation = -17640.515934 eV Core-core repulsion = 14856.442328 eV Total energy + Delta-G solvation = -2784.073605 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.86956 -37.96081 -35.27272 -33.11397 -32.30416 -30.52939 -28.86731 -27.62852 -25.84881 -22.67375 -22.25731 -20.45545 -19.62259 -18.22420 -17.12114 -16.24336 -15.47993 -15.13395 -14.50081 -14.17040 -13.87811 -13.60385 -13.53573 -12.88972 -12.75040 -12.58532 -12.15113 -12.04900 -11.69091 -11.53365 -11.31896 -11.27415 -10.81887 -10.73984 -10.64137 -10.44262 -10.29089 -10.23678 -9.62977 -9.30639 -8.98833 -7.87804 -7.34686 -6.55217 -6.53837 -5.07579 1.95102 2.43086 2.95948 3.05372 3.10158 3.15340 3.35499 3.87625 4.27446 4.61820 5.06968 5.09630 5.16891 5.54712 5.57985 5.63232 5.72247 5.80680 5.86849 5.94437 6.06710 6.09985 6.13503 6.16428 6.21635 6.26622 6.46163 6.51277 6.76479 7.08002 7.22198 7.33716 7.68738 7.81825 7.95214 8.63076 9.03658 10.16912 10.36107 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.041952 B = 0.005076 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.274370 B = 5515.278636 C = 6128.528796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.236 4.236 3 C 0.098 3.902 4 N -0.652 5.652 5 C 0.527 3.473 6 O -0.552 6.552 7 C -0.528 4.528 8 H 0.074 0.926 9 C 0.087 3.913 10 N -0.737 5.737 11 Si 0.917 3.083 12 H -0.261 1.261 13 H -0.272 1.272 14 H -0.272 1.272 15 S 0.228 5.772 16 C -0.305 4.305 17 C -0.060 4.060 18 C -0.053 4.053 19 C -0.116 4.116 20 C -0.112 4.112 21 C -0.031 4.031 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.398 0.602 26 H 0.276 0.724 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.971 -11.617 -0.004 12.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.251 4.251 3 C -0.123 4.123 4 N -0.293 5.293 5 C 0.338 3.662 6 O -0.438 6.438 7 C -0.563 4.563 8 H 0.092 0.908 9 C -0.138 4.138 10 N -0.364 5.364 11 Si 0.740 3.260 12 H -0.184 1.184 13 H -0.197 1.197 14 H -0.197 1.197 15 S 0.490 5.510 16 C -0.422 4.422 17 C -0.073 4.073 18 C -0.092 4.092 19 C -0.153 4.153 20 C -0.151 4.151 21 C -0.070 4.070 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.233 0.767 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.600 -10.597 -0.012 10.717 hybrid contribution -2.265 0.266 0.004 2.280 sum -3.865 -10.331 -0.009 11.030 Atomic orbital electron populations 1.20131 0.91330 1.01044 1.00508 1.18416 0.95856 0.90243 1.20546 1.22267 0.98369 0.89019 1.02671 1.43372 1.10555 1.02216 1.73136 1.16980 0.86035 0.84036 0.79136 1.90634 1.13875 1.83214 1.56029 1.19749 0.94846 0.89762 1.51950 0.90812 1.25786 0.94359 1.01275 0.92336 1.70018 1.03344 1.32255 1.30802 0.86155 0.80207 0.80992 0.78609 1.18436 1.19736 1.19741 1.85255 1.00353 0.92996 1.72416 1.25537 0.97148 1.01080 1.18461 1.18760 0.91639 0.93836 1.03052 1.20443 0.97059 0.90944 1.00768 1.21493 0.95720 0.98024 1.00077 1.21525 0.96830 0.96725 1.00024 1.19988 0.95022 0.91229 1.00731 0.93058 0.92594 0.93158 0.76656 0.91340 0.91615 0.91559 0.92385 0.91960 0.91948 0.92213 0.91783 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 9.44 36.00 0.34 -0.76 16 2 C -0.24 -4.50 5.88 -105.30 -0.62 -5.12 16 3 C 0.10 2.19 7.13 -15.56 -0.11 2.07 16 4 N -0.65 -15.09 5.30 -13.63 -0.07 -15.16 16 5 C 0.53 14.48 7.48 -15.44 -0.12 14.36 16 6 O -0.55 -16.74 12.31 4.92 0.06 -16.68 16 7 C -0.53 -14.07 9.24 -38.07 -0.35 -14.42 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 9 C 0.09 2.27 5.49 -17.36 -0.10 2.17 16 10 N -0.74 -20.66 11.70 55.55 0.65 -20.01 16 11 Si 0.92 18.79 29.56 -169.99 -5.02 13.77 16 12 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 13 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 14 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 15 S 0.23 5.03 20.34 -107.50 -2.19 2.85 16 16 C -0.30 -5.60 6.38 -34.73 -0.22 -5.82 16 17 C -0.06 -1.07 5.77 -104.73 -0.60 -1.67 16 18 C -0.05 -0.73 5.20 -27.08 -0.14 -0.87 16 19 C -0.12 -1.39 5.87 -26.68 -0.16 -1.55 16 20 C -0.11 -1.38 5.93 -26.58 -0.16 -1.53 16 21 C -0.03 -0.45 6.26 -27.41 -0.17 -0.62 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.75 7.45 -51.93 -0.39 0.37 16 24 H 0.05 0.75 7.14 -51.93 -0.37 0.38 16 25 H 0.40 7.98 7.45 -40.82 -0.30 7.68 16 26 H 0.28 6.92 8.29 -40.82 -0.34 6.58 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.85 7.93 -51.93 -0.41 0.44 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 31 H 0.06 0.78 8.10 -51.92 -0.42 0.36 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 291.77 15.07 4.40 4.40 Total: -1.00 -30.96 291.77 -8.98 -39.94 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -4.40 Total: 4.64 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -2.41 Total: -13.75 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.58 Total: -35.17 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: 0.06 Total: -16.68 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.77 kcal Atomic # 16 Polarization: 5.03 SS G_CDS: -2.19 Total: 2.85 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.96 -8.98 -39.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153885169.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.017 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds