Wall clock time and date at job start Mon Mar 30 2020 06:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36651 * 122.39949 * 2 1 4 4 N 1.37545 * 125.32664 * 359.97438 * 3 2 1 5 5 C 1.34777 * 119.99801 * 180.02562 * 4 3 2 6 6 O 1.21999 * 120.00264 * 359.97438 * 5 4 3 7 7 C 1.40405 * 120.00162 * 180.02562 * 5 4 3 8 8 H 1.07999 * 119.99796 * 359.97438 * 7 5 4 9 9 C 1.40095 * 120.00088 * 180.02562 * 7 5 4 10 10 N 1.30654 * 120.00063 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 119.99717 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47488 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47163 * 120.00132 * 11 9 7 14 14 H 1.48508 * 109.46883 * 239.99584 * 11 9 7 15 15 S 1.75708 * 109.34202 * 180.24342 * 3 2 1 16 16 C 1.75791 * 91.24329 * 359.64981 * 15 3 2 17 17 C 1.35961 * 110.30632 * 0.35804 * 16 15 3 18 18 C 1.52345 * 122.71662 * 179.71958 * 17 16 15 19 19 C 1.52975 * 108.74330 * 342.53916 * 18 17 16 20 20 C 1.53129 * 109.35193 * 51.35165 * 19 18 17 21 21 C 1.51504 * 125.13295 * 180.11010 * 16 15 3 22 22 H 1.08994 * 109.47031 * 90.02533 * 1 2 3 23 23 H 1.09002 * 109.46825 * 210.02868 * 1 2 3 24 24 H 1.09001 * 109.47267 * 330.02353 * 1 2 3 25 25 H 0.97000 * 120.00637 * 359.72434 * 4 3 2 26 26 H 0.97005 * 120.00050 * 180.02562 * 10 9 7 27 27 H 1.08996 * 109.59410 * 102.31928 * 18 17 16 28 28 H 1.09000 * 109.58838 * 222.76591 * 18 17 16 29 29 H 1.08999 * 109.49181 * 171.31577 * 19 18 17 30 30 H 1.08997 * 109.49360 * 291.38661 * 19 18 17 31 31 H 1.09008 * 109.54377 * 48.85931 * 20 19 18 32 32 H 1.09001 * 109.54847 * 169.13352 * 20 19 18 33 33 H 1.09002 * 109.60889 * 44.15340 * 21 16 15 34 34 H 1.09000 * 109.60444 * 283.65976 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2392 1.1538 0.0000 4 7 1.7178 2.4266 -0.0005 5 6 2.5426 3.4926 -0.0010 6 8 3.7515 3.3286 -0.0005 7 6 2.0105 4.7919 -0.0009 8 1 0.9403 4.9371 -0.0010 9 6 2.8677 5.8999 -0.0020 10 7 4.1624 5.7242 -0.0024 11 14 2.1597 7.6286 -0.0026 12 1 0.6766 7.5560 -0.0026 13 1 2.6205 8.3527 1.2092 14 1 2.6195 8.3513 -1.2158 15 16 3.9508 0.7568 -0.0070 16 6 3.5910 -0.9638 0.0011 17 6 2.2463 -1.1646 0.0005 18 6 1.6212 -2.5540 0.0004 19 6 2.6799 -3.5693 -0.4337 20 6 3.9422 -3.3791 0.4120 21 6 4.6252 -2.0709 0.0024 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 -0.8898 0.5143 24 1 -0.3634 0.8902 0.5135 25 1 0.7567 2.5571 -0.0049 26 1 4.7560 6.4915 -0.0028 27 1 1.2710 -2.7973 1.0035 28 1 0.7840 -2.5780 -0.6972 29 1 2.2954 -4.5792 -0.2911 30 1 2.9206 -3.4165 -1.4857 31 1 3.6711 -3.3341 1.4669 32 1 4.6228 -4.2138 0.2443 33 1 5.4155 -1.8323 0.7142 34 1 5.0490 -2.1766 -0.9963 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153885169.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:17 Heat of formation + Delta-G solvation = -55.917604 kcal Electronic energy + Delta-G solvation = -17641.339522 eV Core-core repulsion = 14856.442328 eV Total energy + Delta-G solvation = -2784.897194 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.48937 -39.58125 -36.78415 -34.95133 -34.13786 -31.71555 -30.21109 -29.42633 -27.38620 -24.12036 -23.45314 -22.19416 -21.10461 -19.83573 -18.71617 -18.09867 -17.11393 -16.68703 -16.02201 -15.72594 -15.30326 -15.06896 -14.70762 -14.64670 -14.22857 -13.84674 -13.47919 -13.26258 -13.18916 -12.99810 -12.93250 -12.81413 -12.53932 -12.32076 -12.02615 -11.68855 -11.62301 -11.33719 -11.08828 -11.07442 -10.79352 -9.87114 -8.99070 -8.48913 -8.22564 -7.11514 0.34885 0.81571 1.34908 1.37160 1.55788 1.61303 1.85786 2.16082 2.36014 2.90087 3.52706 3.97231 4.07282 4.12021 4.36109 4.41619 4.51976 4.61413 4.73873 4.83626 4.89278 4.95526 5.00584 5.07980 5.12177 5.17204 5.21601 5.33211 5.41772 5.53855 5.73866 5.76341 5.88492 6.04079 6.16562 6.62147 7.17375 8.20361 8.42911 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.041952 B = 0.005076 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.274370 B = 5515.278636 C = 6128.528796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.212 4.212 3 C 0.054 3.946 4 N -0.650 5.650 5 C 0.511 3.489 6 O -0.595 6.595 7 C -0.555 4.555 8 H 0.093 0.907 9 C 0.033 3.967 10 N -0.791 5.791 11 Si 1.005 2.995 12 H -0.245 1.245 13 H -0.265 1.265 14 H -0.265 1.265 15 S 0.132 5.868 16 C -0.282 4.282 17 C -0.073 4.073 18 C -0.050 4.050 19 C -0.114 4.114 20 C -0.107 4.107 21 C -0.036 4.036 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.052 0.948 25 H 0.410 0.590 26 H 0.282 0.718 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.254 -13.533 0.014 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.228 4.228 3 C -0.165 4.165 4 N -0.293 5.293 5 C 0.322 3.678 6 O -0.483 6.483 7 C -0.589 4.589 8 H 0.111 0.889 9 C -0.187 4.187 10 N -0.419 5.419 11 Si 0.823 3.177 12 H -0.168 1.168 13 H -0.190 1.190 14 H -0.190 1.190 15 S 0.395 5.605 16 C -0.400 4.400 17 C -0.085 4.085 18 C -0.089 4.089 19 C -0.152 4.152 20 C -0.146 4.146 21 C -0.076 4.076 22 H 0.084 0.916 23 H 0.102 0.898 24 H 0.071 0.929 25 H 0.247 0.753 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.910 -12.558 0.005 13.153 hybrid contribution -1.559 0.617 -0.006 1.677 sum -5.469 -11.941 -0.001 13.133 Atomic orbital electron populations 1.20266 0.88396 1.02561 1.01910 1.19061 0.97957 0.89508 1.16283 1.22445 0.97748 0.89500 1.06784 1.42881 1.10572 1.02028 1.73811 1.17361 0.86028 0.85447 0.78966 1.90611 1.15592 1.84499 1.57642 1.20273 0.96084 0.90172 1.52396 0.88885 1.27050 0.94412 1.06346 0.90854 1.70163 1.05386 1.34209 1.32141 0.84856 0.79930 0.74030 0.78842 1.16788 1.19007 1.19017 1.85429 1.03213 0.97594 1.74274 1.25884 0.98673 0.98779 1.16653 1.19378 0.91320 0.95789 1.02005 1.20588 0.97854 0.88255 1.02242 1.21524 0.94930 0.99148 0.99554 1.21543 0.97455 0.95614 1.00011 1.20204 0.94463 0.91475 1.01425 0.91552 0.89802 0.92943 0.75296 0.90720 0.90054 0.89962 0.89146 0.92431 0.91950 0.89404 0.91723 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.04 9.44 71.24 0.67 -1.37 16 2 C -0.21 -7.89 5.88 -20.31 -0.12 -8.01 16 3 C 0.05 2.47 7.13 83.43 0.59 3.07 16 4 N -0.65 -31.29 5.30 -315.14 -1.67 -32.96 16 5 C 0.51 29.54 7.48 84.77 0.63 30.17 16 6 O -0.59 -38.56 12.31 -5.31 -0.07 -38.63 16 7 C -0.55 -30.42 9.24 23.25 0.21 -30.20 16 8 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 9 C 0.03 1.76 5.49 85.32 0.47 2.23 16 10 N -0.79 -46.34 11.70 21.84 0.26 -46.08 16 11 Si 1.01 38.77 29.56 68.60 2.03 40.80 16 12 H -0.25 -8.72 7.11 99.48 0.71 -8.02 16 13 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 14 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 15 S 0.13 6.20 20.34 -56.49 -1.15 5.05 16 16 C -0.28 -10.29 6.38 25.41 0.16 -10.12 16 17 C -0.07 -2.45 5.77 -19.93 -0.11 -2.57 16 18 C -0.05 -1.17 5.20 30.37 0.16 -1.02 16 19 C -0.11 -2.23 5.87 30.63 0.18 -2.05 16 20 C -0.11 -2.24 5.93 30.69 0.18 -2.06 16 21 C -0.04 -1.02 6.26 30.16 0.19 -0.83 16 22 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.08 1.91 7.45 -2.39 -0.02 1.90 16 24 H 0.05 1.46 7.14 -2.39 -0.02 1.45 16 25 H 0.41 16.80 7.45 -92.71 -0.69 16.11 16 26 H 0.28 14.79 8.29 -92.70 -0.77 14.02 16 27 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.08 1.70 7.93 -2.39 -0.02 1.68 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 31 H 0.06 1.33 8.10 -2.38 -0.02 1.31 16 32 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.79 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -72.12 291.77 3.05 -69.07 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.43 Total: 25.52 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 3.22 Total: -22.77 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -1.42 Total: -79.05 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -0.07 Total: -38.63 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Atomic # 16 Polarization: 6.20 SS G_CDS: -1.15 Total: 5.05 kcal Total: -72.12 3.05 -69.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153885169.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.156 kcal (2) G-P(sol) polarization free energy of solvation -72.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds