Wall clock time and date at job start Mon Mar 30 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46660 * 2 1 4 4 H 1.08996 * 109.47108 * 304.77265 * 3 2 1 5 5 C 1.50703 * 109.46908 * 184.78008 * 3 2 1 6 6 H 1.07997 * 120.00076 * 245.45642 * 5 3 2 7 7 C 1.37872 * 120.00037 * 65.44535 * 5 3 2 8 8 N 1.31520 * 120.00318 * 9.50098 * 7 5 3 9 9 Si 1.86806 * 119.99950 * 189.49164 * 7 5 3 10 10 H 1.48495 * 109.47130 * 85.00029 * 9 7 5 11 11 H 1.48507 * 109.47058 * 204.99938 * 9 7 5 12 12 H 1.48497 * 109.47035 * 324.99503 * 9 7 5 13 13 O 1.45191 * 109.47303 * 64.77853 * 3 2 1 14 14 C 1.34897 * 117.00150 * 269.99575 * 13 3 2 15 15 O 1.21608 * 119.99613 * 0.02562 * 14 13 3 16 16 C 1.46541 * 120.00104 * 179.97438 * 14 13 3 17 17 S 1.75794 * 125.50180 * 0.03086 * 16 14 13 18 18 C 1.70521 * 91.80462 * 179.97438 * 17 16 14 19 19 C 1.33346 * 111.43127 * 359.97438 * 18 17 16 20 20 C 1.38227 * 125.50216 * 179.71813 * 16 14 13 21 21 C 1.43201 * 123.64187 * 0.02562 * 20 16 14 22 22 N 6.25341 * 44.81841 * 9.25827 * 2 1 3 23 23 H 1.09002 * 109.47637 * 299.99972 * 1 2 3 24 24 H 1.08994 * 109.47512 * 60.00419 * 1 2 3 25 25 H 1.09001 * 109.47069 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47277 * 240.00181 * 2 1 3 27 27 H 1.09000 * 109.47284 * 119.99205 * 2 1 3 28 28 H 0.96998 * 120.00205 * 179.97438 * 8 7 5 29 29 H 1.07995 * 124.28456 * 179.97438 * 18 17 16 30 30 H 1.07996 * 122.47439 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6084 1.9805 -0.8441 5 6 3.5423 1.4443 -0.1184 6 1 4.1478 1.8096 0.6978 7 6 4.1436 0.9793 -1.2686 8 7 3.4143 0.7103 -2.3295 9 14 5.9945 0.7314 -1.3203 10 1 6.3300 -0.6078 -0.7734 11 1 6.4674 0.8252 -2.7249 12 1 6.6572 1.7799 -0.5038 13 8 1.6512 2.0933 1.2384 14 6 0.4621 2.7303 1.2485 15 8 -0.2306 2.7405 0.2491 16 6 0.0048 3.4088 2.4642 17 16 0.8852 3.4845 3.9839 18 6 -0.3499 4.4045 4.7158 19 6 -1.3529 4.6354 3.8680 20 6 -1.1859 4.0978 2.5993 21 6 -2.1450 4.2387 1.5452 22 7 -2.9058 4.3504 0.7091 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 3.8375 0.3835 -3.1388 29 1 -0.3232 4.7556 5.7367 30 1 -2.2292 5.2017 4.1470 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187982279.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:45 Heat of formation + Delta-G solvation = -29.724189 kcal Electronic energy + Delta-G solvation = -17324.874822 eV Core-core repulsion = 14405.280365 eV Total energy + Delta-G solvation = -2919.594457 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.84410 -38.33187 -35.81109 -35.77909 -33.53221 -31.57025 -30.30916 -27.50191 -26.14351 -23.34010 -21.99420 -21.19383 -19.94649 -18.44295 -17.22425 -16.47409 -16.21129 -15.52704 -15.03989 -14.68425 -14.31324 -14.06859 -13.42414 -13.07808 -12.89671 -12.71340 -12.53466 -12.17912 -12.07522 -11.62375 -11.41197 -11.29646 -11.07668 -11.02340 -10.71041 -10.32387 -10.00921 -9.83402 -9.48259 -9.10294 -8.91662 -8.76029 -8.50944 -6.24518 -4.29165 0.09747 1.21539 1.68857 1.77921 2.89852 3.07829 3.23005 3.25228 3.29964 3.40029 3.64810 4.01847 4.29411 4.86481 4.94566 5.08668 5.37250 5.60418 5.81415 5.92437 6.13598 6.20239 6.34607 6.76682 6.85828 7.05104 7.08802 7.50573 7.60359 7.64863 7.77716 8.03870 8.44176 8.80458 9.34936 10.84440 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025076 B = 0.005835 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.347378 B = 4797.625286 C = 5438.267189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.221 3.779 4 H 0.056 0.944 5 C -0.527 4.527 6 H 0.070 0.930 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.908 3.092 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.271 1.271 13 O -0.347 6.347 14 C 0.516 3.484 15 O -0.488 6.488 16 C -0.199 4.199 17 S 0.320 5.680 18 C -0.254 4.254 19 C -0.115 4.115 20 C 0.022 3.978 21 C 0.272 3.728 22 N -0.395 5.395 23 H 0.033 0.967 24 H 0.055 0.945 25 H 0.035 0.965 26 H 0.091 0.909 27 H 0.047 0.953 28 H 0.267 0.733 29 H 0.178 0.822 30 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.638 5.012 15.338 16.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.074 0.926 5 C -0.565 4.565 6 H 0.089 0.911 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.735 3.265 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.196 1.196 13 O -0.264 6.264 14 C 0.358 3.642 15 O -0.378 6.378 16 C -0.322 4.322 17 S 0.589 5.411 18 C -0.392 4.392 19 C -0.146 4.146 20 C 0.003 3.997 21 C -0.045 4.045 22 N -0.071 5.071 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.109 0.891 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.196 0.804 30 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.534 4.527 14.074 15.464 hybrid contribution -0.252 0.327 -0.368 0.553 sum -4.786 4.854 13.706 15.308 Atomic orbital electron populations 1.21876 0.98034 0.99325 1.01028 1.21936 0.92965 0.99216 1.02468 1.20797 0.95307 0.88522 0.78445 0.92573 1.20948 0.89193 1.44191 1.02120 0.91143 1.24897 0.99178 0.95065 0.94545 1.69989 1.36133 1.43665 1.02245 0.86343 0.83884 0.78934 0.77326 1.20182 1.21061 1.19598 1.86567 1.32623 1.62343 1.44818 1.19489 0.81773 0.77291 0.85637 1.90902 1.55500 1.57810 1.33585 1.24454 0.99733 1.08067 0.99965 1.83574 1.16196 1.43260 0.98023 1.25329 1.00403 1.07572 1.05885 1.19691 1.01355 1.03027 0.90535 1.15292 0.91117 1.01756 0.91525 1.24630 0.92889 0.94312 0.92686 1.81157 1.10607 1.07380 1.08002 0.94802 0.92592 0.94548 0.89070 0.93421 0.92281 0.80442 0.82953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.56 37.16 0.32 -2.82 16 2 C -0.13 -3.05 5.54 -26.73 -0.15 -3.20 16 3 C 0.22 5.71 2.12 -27.88 -0.06 5.65 16 4 H 0.06 1.64 7.11 -51.93 -0.37 1.27 16 5 C -0.53 -14.26 8.82 -34.44 -0.30 -14.56 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C 0.07 1.79 5.16 -17.82 -0.09 1.70 16 8 N -0.88 -24.85 12.16 55.43 0.67 -24.17 16 9 Si 0.91 20.55 29.55 -169.99 -5.02 15.52 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 O -0.35 -7.84 9.66 -41.03 -0.40 -8.23 16 14 C 0.52 10.67 6.37 34.08 0.22 10.89 16 15 O -0.49 -11.47 12.55 -19.35 -0.24 -11.71 16 16 C -0.20 -3.09 6.50 -36.24 -0.24 -3.32 16 17 S 0.32 3.43 22.91 -107.50 -2.46 0.96 16 18 C -0.25 -1.99 10.87 29.02 0.32 -1.67 16 19 C -0.11 -1.09 9.99 -41.08 -0.41 -1.50 16 20 C 0.02 0.31 5.74 -107.77 -0.62 -0.31 16 21 C 0.27 4.55 13.90 -22.47 -0.31 4.23 16 22 N -0.40 -7.40 18.54 41.84 0.78 -6.62 16 23 H 0.03 0.70 6.06 -51.93 -0.31 0.39 16 24 H 0.05 1.29 7.78 -51.93 -0.40 0.89 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.09 2.35 6.81 -51.93 -0.35 2.00 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 30 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 286.53 15.07 4.32 4.32 Total: -1.00 -31.21 286.53 -6.36 -37.58 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -2.68 Total: -2.72 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -1.33 Total: -4.92 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 1.45 Total: -30.80 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.64 Total: -19.95 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -2.46 Total: 0.96 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.21 -6.36 -37.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187982279.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.853 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds