Wall clock time and date at job start Mon Mar 30 2020 06:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86801 * 120.00085 * 2 1 4 4 H 1.48498 * 109.47395 * 270.00632 * 3 2 1 5 5 H 1.48500 * 109.46741 * 30.00308 * 3 2 1 6 6 H 1.48499 * 109.47210 * 150.00034 * 3 2 1 7 7 C 1.39972 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99803 * 162.80504 * 7 2 1 9 9 C 1.41088 * 120.00221 * 342.79878 * 7 2 1 10 10 C 1.40721 * 120.30713 * 334.76807 * 9 7 2 11 11 C 1.37888 * 120.19414 * 180.25271 * 10 9 7 12 12 C 1.38259 * 120.73198 * 359.42154 * 11 10 9 13 13 C 1.39985 * 120.26762 * 0.59810 * 12 11 10 14 14 N 1.35811 * 133.52947 * 179.68413 * 13 12 11 15 15 C 1.30891 * 108.70177 * 179.97438 * 14 13 12 16 16 C 1.47828 * 125.03002 * 179.97438 * 15 14 13 17 17 C 1.39578 * 120.14439 * 179.75429 * 16 15 14 18 18 C 1.37966 * 119.85006 * 179.69793 * 17 16 15 19 19 C 1.38349 * 120.14559 * 0.57667 * 18 17 16 20 20 C 1.38359 * 120.29605 * 359.71939 * 19 18 17 21 21 C 1.37962 * 120.14226 * 359.97438 * 20 19 18 22 22 O 1.34626 * 109.94263 * 0.02562 * 15 14 13 23 23 C 1.34843 * 108.12799 * 0.02562 * 22 15 14 24 24 H 0.96997 * 120.00038 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.90417 * 359.97438 * 10 9 7 26 26 H 1.08000 * 119.63363 * 179.69846 * 11 10 9 27 27 H 1.08001 * 119.86284 * 180.28292 * 12 11 10 28 28 H 1.08000 * 120.07112 * 359.97438 * 17 16 15 29 29 H 1.08006 * 119.92564 * 180.27332 * 18 17 16 30 30 H 1.08008 * 119.85278 * 179.69388 * 19 18 17 31 31 H 1.07997 * 119.92939 * 179.97438 * 20 19 18 32 32 H 1.07994 * 120.07347 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4398 2.6526 0.7001 6 1 3.5399 1.4402 0.7000 7 6 2.0082 -1.2122 -0.0005 8 1 3.0520 -1.2330 -0.2771 9 6 1.3501 -2.4069 0.3603 10 6 0.2210 -2.3702 1.1994 11 6 -0.4173 -3.5396 1.5547 12 6 0.0316 -4.7603 1.0855 13 6 1.1527 -4.8259 0.2498 14 7 1.8149 -5.8498 -0.3481 15 6 2.8144 -5.3585 -1.0358 16 6 3.7729 -6.1574 -1.8285 17 6 4.8013 -5.5252 -2.5292 18 6 5.6963 -6.2771 -3.2621 19 6 5.5689 -7.6538 -3.3130 20 6 4.5481 -8.2862 -2.6257 21 6 3.6502 -7.5466 -1.8841 22 8 2.8410 -4.0181 -0.9134 23 6 1.8178 -3.6492 -0.1164 24 1 -0.4850 0.8400 0.0004 25 1 -0.1440 -1.4236 1.5698 26 1 -1.2801 -3.5013 2.2032 27 1 -0.4817 -5.6672 1.3691 28 1 4.8988 -4.4501 -2.4941 29 1 6.4951 -5.7895 -3.8012 30 1 6.2692 -8.2374 -3.8922 31 1 4.4540 -9.3612 -2.6700 32 1 2.8542 -8.0414 -1.3477 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000205056633.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:34 Heat of formation + Delta-G solvation = 50.743849 kcal Electronic energy + Delta-G solvation = -18362.083037 eV Core-core repulsion = 15446.367079 eV Total energy + Delta-G solvation = -2915.715958 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.084 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.98805 -38.88782 -36.63690 -34.28235 -33.18613 -31.49440 -30.88201 -29.78502 -27.76710 -25.47866 -23.70685 -22.66724 -21.36798 -20.85188 -20.25434 -17.71543 -17.05121 -16.49180 -15.83755 -15.62828 -15.37208 -14.82690 -14.46295 -13.98696 -13.37495 -13.11630 -13.00271 -12.77964 -12.55998 -11.87255 -11.44420 -11.34853 -11.28035 -11.06901 -11.03972 -10.71905 -10.50864 -10.34177 -10.04278 -9.41622 -9.32455 -8.92807 -8.87299 -7.55149 -7.12146 -6.98159 -4.53855 0.90413 1.43846 2.22742 2.65722 2.95341 2.97089 3.03566 3.43228 3.49019 3.78293 4.03242 4.48174 4.50713 4.96331 4.99618 5.14483 5.35240 5.46270 5.57907 5.77318 5.94954 6.06402 6.11996 6.31951 6.48414 6.49653 6.59874 6.68309 6.73812 6.84809 6.95066 6.99727 7.29574 7.46797 7.70413 7.84986 7.97045 8.24343 8.47422 8.55749 8.78540 9.94559 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.022580 B = 0.005458 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.759127 B = 5129.088653 C = 6287.488826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.446 4.446 8 H 0.083 0.917 9 C 0.139 3.861 10 C -0.179 4.179 11 C -0.077 4.077 12 C -0.209 4.209 13 C 0.048 3.952 14 N -0.477 5.477 15 C 0.230 3.770 16 C 0.000 4.000 17 C -0.093 4.093 18 C -0.123 4.123 19 C -0.114 4.114 20 C -0.125 4.125 21 C -0.077 4.077 22 O -0.203 6.203 23 C -0.061 4.061 24 H 0.286 0.714 25 H 0.132 0.868 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.017 -6.894 -3.917 10.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.145 4.145 3 Si 0.738 3.262 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.474 4.474 8 H 0.101 0.899 9 C 0.136 3.864 10 C -0.199 4.199 11 C -0.097 4.097 12 C -0.230 4.230 13 C -0.065 4.065 14 N -0.210 5.210 15 C 0.024 3.976 16 C -0.001 4.001 17 C -0.112 4.112 18 C -0.141 4.141 19 C -0.132 4.132 20 C -0.142 4.142 21 C -0.096 4.096 22 O -0.093 6.093 23 C -0.111 4.111 24 H 0.097 0.903 25 H 0.150 0.850 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.150 0.850 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.646 -7.304 -3.878 10.609 hybrid contribution 0.387 1.498 -0.116 1.552 sum 7.033 -5.806 -3.993 9.956 Atomic orbital electron populations 1.69806 1.07683 1.29918 1.32861 1.25954 0.94841 1.01606 0.92118 0.86192 0.80653 0.79832 0.79519 1.19212 1.19714 1.18191 1.19578 0.98134 0.90954 1.38739 0.89899 1.16570 0.92154 0.87280 0.90403 1.21005 0.99228 0.97557 1.02137 1.20582 0.98312 0.92251 0.98555 1.19447 0.99375 0.97177 1.07037 1.19508 0.98562 0.87477 1.00938 1.70592 1.06567 1.32123 1.11688 1.23467 0.95926 0.79351 0.98884 1.17416 0.93505 0.91861 0.97307 1.21338 0.93518 1.00784 0.95569 1.21038 0.99321 0.94000 0.99713 1.21263 0.98114 0.94730 0.99126 1.21058 0.95327 0.99954 0.97909 1.21213 0.98924 0.91873 0.97620 1.84263 1.45524 1.22787 1.56711 1.20891 0.91757 0.97591 1.00832 0.90281 0.84996 0.87831 0.88070 0.84979 0.85549 0.85917 0.85487 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.20 10.97 55.55 0.61 -18.59 16 2 C 0.07 1.81 5.15 -17.33 -0.09 1.72 16 3 Si 0.91 17.92 29.59 -169.99 -5.03 12.89 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.45 -11.72 9.05 -37.85 -0.34 -12.06 16 8 H 0.08 2.14 7.90 -52.49 -0.41 1.72 16 9 C 0.14 3.76 5.57 -106.82 -0.59 3.17 16 10 C -0.18 -4.55 8.69 -38.77 -0.34 -4.88 16 11 C -0.08 -1.79 9.99 -39.70 -0.40 -2.19 16 12 C -0.21 -4.99 10.11 -38.92 -0.39 -5.39 16 13 C 0.05 1.24 7.22 -84.77 -0.61 0.63 16 14 N -0.48 -11.38 10.90 -9.33 -0.10 -11.48 16 15 C 0.23 5.14 7.84 -14.03 -0.11 5.03 16 16 C 0.00 0.01 5.87 -104.97 -0.62 -0.61 16 17 C -0.09 -1.40 9.71 -39.18 -0.38 -1.78 16 18 C -0.12 -1.45 10.03 -39.64 -0.40 -1.85 16 19 C -0.11 -1.22 10.04 -39.50 -0.40 -1.61 16 20 C -0.12 -1.45 10.03 -39.64 -0.40 -1.85 16 21 C -0.08 -1.15 9.68 -39.18 -0.38 -1.53 16 22 O -0.20 -5.05 10.45 3.32 0.03 -5.02 16 23 C -0.06 -1.64 7.16 -37.84 -0.27 -1.91 16 24 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 25 H 0.13 3.34 6.18 -52.49 -0.32 3.01 16 26 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 27 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 28 H 0.13 1.99 7.87 -52.49 -0.41 1.58 16 29 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 30 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.14 2.05 7.80 -52.49 -0.41 1.64 16 LS Contribution 287.69 15.07 4.34 4.34 Total: -1.00 -29.22 287.69 -8.68 -37.89 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -2.81 Total: 5.08 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -5.71 Total: -25.11 kcal Atomic # 7 Polarization: -30.58 SS G_CDS: 0.51 Total: -30.08 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: 0.03 Total: -5.02 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.22 -8.68 -37.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205056633.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.638 kcal (2) G-P(sol) polarization free energy of solvation -29.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds