Wall clock time and date at job start Mon Mar 30 2020 06:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86801 * 120.00085 * 2 1 4 4 H 1.48498 * 109.47395 * 270.00632 * 3 2 1 5 5 H 1.48500 * 109.46741 * 30.00308 * 3 2 1 6 6 H 1.48499 * 109.47210 * 150.00034 * 3 2 1 7 7 C 1.39972 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99803 * 162.80504 * 7 2 1 9 9 C 1.41088 * 120.00221 * 342.79878 * 7 2 1 10 10 C 1.40721 * 120.30713 * 334.76807 * 9 7 2 11 11 C 1.37888 * 120.19414 * 180.25271 * 10 9 7 12 12 C 1.38259 * 120.73198 * 359.42154 * 11 10 9 13 13 C 1.39985 * 120.26762 * 0.59810 * 12 11 10 14 14 N 1.35811 * 133.52947 * 179.68413 * 13 12 11 15 15 C 1.30891 * 108.70177 * 179.97438 * 14 13 12 16 16 C 1.47828 * 125.03002 * 179.97438 * 15 14 13 17 17 C 1.39578 * 120.14439 * 179.75429 * 16 15 14 18 18 C 1.37966 * 119.85006 * 179.69793 * 17 16 15 19 19 C 1.38349 * 120.14559 * 0.57667 * 18 17 16 20 20 C 1.38359 * 120.29605 * 359.71939 * 19 18 17 21 21 C 1.37962 * 120.14226 * 359.97438 * 20 19 18 22 22 O 1.34626 * 109.94263 * 0.02562 * 15 14 13 23 23 C 1.34843 * 108.12799 * 0.02562 * 22 15 14 24 24 H 0.96997 * 120.00038 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.90417 * 359.97438 * 10 9 7 26 26 H 1.08000 * 119.63363 * 179.69846 * 11 10 9 27 27 H 1.08001 * 119.86284 * 180.28292 * 12 11 10 28 28 H 1.08000 * 120.07112 * 359.97438 * 17 16 15 29 29 H 1.08006 * 119.92564 * 180.27332 * 18 17 16 30 30 H 1.08008 * 119.85278 * 179.69388 * 19 18 17 31 31 H 1.07997 * 119.92939 * 179.97438 * 20 19 18 32 32 H 1.07994 * 120.07347 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4398 2.6526 0.7001 6 1 3.5399 1.4402 0.7000 7 6 2.0082 -1.2122 -0.0005 8 1 3.0520 -1.2330 -0.2771 9 6 1.3501 -2.4069 0.3603 10 6 0.2210 -2.3702 1.1994 11 6 -0.4173 -3.5396 1.5547 12 6 0.0316 -4.7603 1.0855 13 6 1.1527 -4.8259 0.2498 14 7 1.8149 -5.8498 -0.3481 15 6 2.8144 -5.3585 -1.0358 16 6 3.7729 -6.1574 -1.8285 17 6 4.8013 -5.5252 -2.5292 18 6 5.6963 -6.2771 -3.2621 19 6 5.5689 -7.6538 -3.3130 20 6 4.5481 -8.2862 -2.6257 21 6 3.6502 -7.5466 -1.8841 22 8 2.8410 -4.0181 -0.9134 23 6 1.8178 -3.6492 -0.1164 24 1 -0.4850 0.8400 0.0004 25 1 -0.1440 -1.4236 1.5698 26 1 -1.2801 -3.5013 2.2032 27 1 -0.4817 -5.6672 1.3691 28 1 4.8988 -4.4501 -2.4941 29 1 6.4951 -5.7895 -3.8012 30 1 6.2692 -8.2374 -3.8922 31 1 4.4540 -9.3612 -2.6700 32 1 2.8542 -8.0414 -1.3477 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000205056633.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:33 Heat of formation + Delta-G solvation = 33.364575 kcal Electronic energy + Delta-G solvation = -18362.836658 eV Core-core repulsion = 15446.367079 eV Total energy + Delta-G solvation = -2916.469579 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.084 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.82104 -39.99009 -38.50734 -36.14432 -34.97103 -32.79204 -31.98194 -31.65005 -29.47642 -27.39575 -25.15570 -24.01116 -22.96709 -22.52321 -21.89761 -19.51439 -18.44136 -18.36710 -17.52840 -17.37864 -16.72716 -16.40624 -15.65255 -15.46125 -14.79918 -14.64035 -14.38501 -14.32202 -13.94485 -13.64476 -13.29570 -12.96921 -12.93120 -12.43429 -12.38148 -12.34514 -12.07163 -12.00587 -11.87267 -11.26287 -11.11288 -10.23164 -9.96275 -9.46323 -8.91906 -8.80933 -6.51417 -0.45525 0.40818 0.60195 0.76289 1.34202 1.38896 1.50500 1.74315 1.82210 2.14366 2.58857 2.86370 2.90084 3.40045 3.91819 4.01099 4.06802 4.20940 4.34091 4.45496 4.48077 4.62027 4.80160 4.84228 4.88758 4.97737 5.06479 5.09246 5.33625 5.46221 5.50473 5.53947 5.56271 5.79062 5.93006 5.96083 6.06300 6.32889 6.54139 6.63955 6.90199 8.15083 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.022580 B = 0.005458 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.759127 B = 5129.088653 C = 6287.488826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.040 3.960 3 Si 0.990 3.010 4 H -0.261 1.261 5 H -0.254 1.254 6 H -0.260 1.260 7 C -0.483 4.483 8 H 0.072 0.928 9 C 0.113 3.887 10 C -0.195 4.195 11 C -0.072 4.072 12 C -0.216 4.216 13 C 0.031 3.969 14 N -0.500 5.500 15 C 0.247 3.753 16 C -0.047 4.047 17 C -0.103 4.103 18 C -0.117 4.117 19 C -0.090 4.090 20 C -0.116 4.116 21 C -0.083 4.083 22 O -0.220 6.220 23 C -0.108 4.108 24 H 0.298 0.702 25 H 0.129 0.871 26 H 0.142 0.858 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.160 0.840 30 H 0.170 0.830 31 H 0.165 0.835 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.644 -7.983 -5.189 12.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.178 4.178 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.178 1.178 6 H -0.184 1.184 7 C -0.510 4.510 8 H 0.090 0.910 9 C 0.110 3.890 10 C -0.215 4.215 11 C -0.091 4.091 12 C -0.237 4.237 13 C -0.081 4.081 14 N -0.232 5.232 15 C 0.040 3.960 16 C -0.048 4.048 17 C -0.123 4.123 18 C -0.134 4.134 19 C -0.108 4.108 20 C -0.134 4.134 21 C -0.103 4.103 22 O -0.112 6.112 23 C -0.157 4.157 24 H 0.110 0.890 25 H 0.147 0.853 26 H 0.160 0.840 27 H 0.142 0.858 28 H 0.137 0.863 29 H 0.178 0.822 30 H 0.187 0.813 31 H 0.182 0.818 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.240 -8.416 -5.136 12.849 hybrid contribution 0.003 1.617 0.139 1.623 sum 8.244 -6.798 -4.997 11.796 Atomic orbital electron populations 1.69814 1.08952 1.31639 1.32393 1.26808 0.95659 1.04474 0.90868 0.85091 0.79091 0.75138 0.79798 1.18539 1.17769 1.18402 1.19745 0.98022 0.92313 1.40971 0.91000 1.16986 0.93071 0.87918 0.91022 1.21087 0.99481 0.98298 1.02648 1.20931 0.98812 0.91170 0.98174 1.19821 0.98964 0.98399 1.06508 1.19971 0.99126 0.87754 1.01242 1.70612 1.07704 1.31561 1.13318 1.24652 0.95520 0.78668 0.97160 1.17670 0.94609 0.92739 0.99767 1.21418 0.93930 1.00685 0.96257 1.21443 0.98827 0.94728 0.98452 1.21847 0.97429 0.94368 0.97142 1.21491 0.94113 1.01598 0.96193 1.21316 0.99792 0.90787 0.98375 1.84232 1.45592 1.24301 1.57047 1.21113 0.93356 0.98250 1.02934 0.89044 0.85347 0.84028 0.85777 0.86273 0.82201 0.81264 0.81792 0.85416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.43 10.97 21.83 0.24 -40.19 16 2 C 0.04 1.96 5.15 85.26 0.44 2.40 16 3 Si 0.99 37.07 29.59 68.60 2.03 39.10 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 5 H -0.25 -8.70 7.11 99.48 0.71 -8.00 16 6 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.48 -26.81 9.05 23.39 0.21 -26.60 16 8 H 0.07 3.98 7.90 -2.91 -0.02 3.95 16 9 C 0.11 6.49 5.57 -21.29 -0.12 6.37 16 10 C -0.20 -10.30 8.69 22.79 0.20 -10.10 16 11 C -0.07 -3.36 9.99 22.19 0.22 -3.14 16 12 C -0.22 -10.53 10.11 22.70 0.23 -10.30 16 13 C 0.03 1.68 7.22 39.39 0.28 1.96 16 14 N -0.50 -25.00 10.90 -297.57 -3.24 -28.24 16 15 C 0.25 11.64 7.84 87.37 0.69 12.33 16 16 C -0.05 -1.67 5.87 -20.09 -0.12 -1.79 16 17 C -0.10 -3.09 9.71 22.53 0.22 -2.87 16 18 C -0.12 -2.36 10.03 22.23 0.22 -2.14 16 19 C -0.09 -1.46 10.04 22.32 0.22 -1.23 16 20 C -0.12 -2.26 10.03 22.23 0.22 -2.03 16 21 C -0.08 -2.42 9.68 22.53 0.22 -2.20 16 22 O -0.22 -11.78 10.45 -11.03 -0.12 -11.90 16 23 C -0.11 -6.14 7.16 23.40 0.17 -5.97 16 24 H 0.30 13.21 8.30 -92.71 -0.77 12.44 16 25 H 0.13 6.74 6.18 -2.91 -0.02 6.72 16 26 H 0.14 5.41 8.06 -2.91 -0.02 5.39 16 27 H 0.12 5.33 8.06 -2.91 -0.02 5.31 16 28 H 0.12 3.77 7.87 -2.91 -0.02 3.75 16 29 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 30 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 31 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.13 3.86 7.80 -2.91 -0.02 3.83 16 Total: -1.00 -68.85 287.69 3.37 -65.49 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 1.15 Total: 21.05 kcal Atomic # 6 Polarization: -48.62 SS G_CDS: 3.31 Total: -45.31 kcal Atomic # 7 Polarization: -65.43 SS G_CDS: -3.00 Total: -68.43 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.12 Total: -11.90 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -68.85 3.37 -65.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205056633.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.851 kcal (2) G-P(sol) polarization free energy of solvation -68.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds