Wall clock time and date at job start Mon Mar 30 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35962 * 117.00136 * 2 1 4 4 C 1.38755 * 120.08981 * 359.71978 * 3 2 1 5 5 C 1.38069 * 120.35586 * 179.70610 * 4 3 2 6 6 C 1.39049 * 120.32411 * 0.51893 * 5 4 3 7 7 C 1.39525 * 119.12931 * 359.86083 * 6 5 4 8 8 C 1.38521 * 120.48901 * 359.81697 * 7 6 5 9 9 S 1.76444 * 119.36744 * 179.64661 * 7 6 5 10 10 C 1.81708 * 101.81713 * 329.43846 * 9 7 6 11 11 H 1.08997 * 109.63751 * 164.67714 * 10 9 7 12 12 C 1.50695 * 109.54097 * 284.92724 * 10 9 7 13 13 H 1.07998 * 120.00729 * 119.49016 * 12 10 9 14 14 C 1.37884 * 119.99785 * 299.49785 * 12 10 9 15 15 N 1.31512 * 119.99975 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00063 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46848 * 59.99808 * 16 14 12 18 18 H 1.48502 * 109.46897 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47070 * 299.99716 * 16 14 12 20 20 C 1.50374 * 108.98063 * 44.77368 * 10 9 7 21 21 O 1.21302 * 118.27570 * 144.96891 * 20 10 9 22 22 N 1.33105 * 123.44728 * 324.97745 * 20 10 9 23 23 H 1.09001 * 109.47103 * 300.00468 * 1 2 3 24 24 H 1.09004 * 109.47054 * 59.99972 * 1 2 3 25 25 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.82277 * 359.94454 * 4 3 2 27 27 H 1.07999 * 119.84050 * 180.26307 * 5 4 3 28 28 H 1.07995 * 120.05692 * 180.14953 * 8 7 6 29 29 H 0.97001 * 120.00210 * 180.02562 * 15 14 12 30 30 H 0.96998 * 117.09048 * 179.09460 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2925 2.3763 -0.0059 5 6 1.9136 3.6094 0.0002 6 6 3.3013 3.6965 0.0014 7 6 4.0555 2.5226 -0.0006 8 6 3.4311 1.2861 0.0000 9 16 5.8169 2.6258 -0.0086 10 6 6.0948 4.1754 -0.9159 11 1 7.1219 4.5083 -0.7665 12 6 5.8460 3.9509 -2.3851 13 1 5.0760 4.5113 -2.8944 14 6 6.6014 3.0296 -3.0793 15 7 7.5393 2.3473 -2.4593 16 14 6.2935 2.7516 -4.9007 17 1 6.5097 4.0220 -5.6387 18 1 7.2313 1.7185 -5.4092 19 1 4.8954 2.2939 -5.1022 20 6 5.1464 5.2217 -0.3990 21 8 5.5306 6.3711 -0.3490 22 7 3.9076 4.9527 0.0067 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2141 2.3182 -0.0113 27 1 1.3187 4.5108 -0.0001 28 1 4.0217 0.3820 0.0008 29 1 8.0710 1.6994 -2.9477 30 1 3.3793 5.6966 0.3359 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214240589.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:07 Heat of formation + Delta-G solvation = -45.463892 kcal Electronic energy + Delta-G solvation = -17630.306005 eV Core-core repulsion = 14710.029024 eV Total energy + Delta-G solvation = -2920.276982 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.07727 -39.15619 -37.15751 -34.04374 -33.44723 -30.85515 -29.38890 -28.68842 -26.94361 -24.30816 -22.52410 -22.27452 -19.59156 -18.15076 -17.28471 -17.06369 -16.72698 -15.58434 -15.48516 -15.22516 -14.65150 -14.34039 -13.88479 -13.49010 -13.13330 -12.83267 -12.61233 -12.43485 -12.27240 -11.55891 -11.30426 -11.23220 -11.00575 -10.76005 -10.54096 -10.32578 -9.66937 -9.58424 -9.21757 -8.82697 -8.55552 -7.40080 -6.67248 -6.02022 -4.49074 1.55540 1.68246 2.63220 3.16012 3.19596 3.22510 3.29455 3.48876 3.70055 3.84890 4.11346 4.20613 4.98156 5.08761 5.17060 5.18817 5.23561 5.36350 5.47219 5.65335 5.72929 6.23310 6.33656 6.46202 6.60177 6.66929 6.84924 7.23292 7.44198 7.51628 7.64177 7.89951 8.42478 8.66556 9.10073 10.62107 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.017724 B = 0.008330 C = 0.006781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.442695 B = 3360.732808 C = 4128.388564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.111 3.889 4 C -0.197 4.197 5 C -0.107 4.107 6 C 0.123 3.877 7 C -0.048 4.048 8 C -0.106 4.106 9 S -0.149 6.149 10 C 0.065 3.935 11 H 0.109 0.891 12 C -0.500 4.500 13 H 0.069 0.931 14 C 0.078 3.922 15 N -0.831 5.831 16 Si 0.909 3.091 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.271 1.271 20 C 0.536 3.464 21 O -0.548 6.548 22 N -0.657 5.657 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.094 0.906 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.136 0.864 29 H 0.274 0.726 30 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.055 -3.268 4.155 13.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.232 6.232 3 C 0.064 3.936 4 C -0.220 4.220 5 C -0.129 4.129 6 C 0.021 3.979 7 C -0.164 4.164 8 C -0.132 4.132 9 S 0.102 5.898 10 C -0.061 4.061 11 H 0.126 0.874 12 C -0.544 4.544 13 H 0.087 0.913 14 C -0.134 4.134 15 N -0.463 5.463 16 Si 0.735 3.265 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.196 1.196 20 C 0.325 3.675 21 O -0.426 6.426 22 N -0.299 5.299 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.113 0.887 26 H 0.143 0.857 27 H 0.142 0.858 28 H 0.154 0.846 29 H 0.084 0.916 30 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -10.359 -3.849 4.610 11.974 hybrid contribution -1.642 1.009 -1.388 2.375 sum -12.001 -2.839 3.222 12.746 Atomic orbital electron populations 1.22968 0.79158 1.03341 1.01078 1.86064 1.20702 1.27093 1.89386 1.18777 0.91869 0.83860 0.99114 1.20759 0.99315 0.91592 1.10300 1.20464 0.91750 0.97623 1.03109 1.17468 0.91533 0.84532 1.04372 1.21417 0.99633 0.92981 1.02417 1.19927 0.90835 0.96855 1.05551 1.85891 0.94781 1.41078 1.68002 1.21344 0.97748 0.88150 0.98828 0.87373 1.20797 1.19934 1.23187 0.90527 0.91308 1.24978 0.94202 0.94619 0.99568 1.69915 1.18171 1.21579 1.36683 0.86355 0.78763 0.78375 0.83057 1.19658 1.20506 1.19588 1.20854 0.81389 0.90715 0.74582 1.90667 1.75300 1.21779 1.54835 1.43039 1.15153 1.08650 1.63091 0.92979 0.92907 0.88739 0.85668 0.85822 0.84597 0.91624 0.76803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.71 10.50 -19.62 -0.21 -4.92 16 3 C 0.11 1.83 6.69 -39.23 -0.26 1.57 16 4 C -0.20 -2.88 9.03 -39.45 -0.36 -3.23 16 5 C -0.11 -1.66 9.82 -39.34 -0.39 -2.05 16 6 C 0.12 2.35 6.55 -83.60 -0.55 1.81 16 7 C -0.05 -1.00 5.95 -39.00 -0.23 -1.24 16 8 C -0.11 -2.03 9.73 -39.31 -0.38 -2.41 16 9 S -0.15 -3.52 20.31 -107.50 -2.18 -5.70 16 10 C 0.07 1.65 2.67 -29.20 -0.08 1.57 16 11 H 0.11 2.91 8.14 -51.93 -0.42 2.49 16 12 C -0.50 -13.27 8.50 -34.44 -0.29 -13.57 16 13 H 0.07 1.84 7.74 -52.49 -0.41 1.43 16 14 C 0.08 2.04 5.28 -17.82 -0.09 1.94 16 15 N -0.83 -22.10 12.21 55.43 0.68 -21.42 16 16 Si 0.91 20.27 29.54 -169.99 -5.02 15.25 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 C 0.54 12.54 6.80 -11.89 -0.08 12.46 16 21 O -0.55 -13.75 17.77 5.54 0.10 -13.66 16 22 N -0.66 -12.89 5.09 -10.24 -0.05 -12.94 16 23 H 0.05 0.44 7.68 -51.93 -0.40 0.04 16 24 H 0.05 0.47 7.65 -51.93 -0.40 0.08 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.13 1.41 6.29 -52.49 -0.33 1.08 16 27 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.14 2.56 8.06 -52.49 -0.42 2.13 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.40 6.52 8.59 -40.82 -0.35 6.17 16 LS Contribution 276.20 15.07 4.16 4.16 Total: -1.00 -29.74 276.20 -6.95 -36.70 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -2.71 Total: 4.38 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.72 Total: -1.86 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.62 Total: -34.36 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.11 Total: -18.58 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.18 Total: -5.70 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.74 -6.95 -36.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214240589.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.767 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds