Wall clock time and date at job start Mon Mar 30 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35962 * 117.00136 * 2 1 4 4 C 1.38755 * 120.08981 * 359.71978 * 3 2 1 5 5 C 1.38069 * 120.35586 * 179.70610 * 4 3 2 6 6 C 1.39049 * 120.32411 * 0.51893 * 5 4 3 7 7 C 1.39525 * 119.12931 * 359.86083 * 6 5 4 8 8 C 1.38521 * 120.48901 * 359.81697 * 7 6 5 9 9 S 1.76444 * 119.36744 * 179.64661 * 7 6 5 10 10 C 1.81708 * 101.81713 * 329.43846 * 9 7 6 11 11 H 1.08997 * 109.63751 * 164.67714 * 10 9 7 12 12 C 1.50695 * 109.54097 * 284.92724 * 10 9 7 13 13 H 1.07998 * 120.00729 * 119.49016 * 12 10 9 14 14 C 1.37884 * 119.99785 * 299.49785 * 12 10 9 15 15 N 1.31512 * 119.99975 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00063 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46848 * 59.99808 * 16 14 12 18 18 H 1.48502 * 109.46897 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47070 * 299.99716 * 16 14 12 20 20 C 1.50374 * 108.98063 * 44.77368 * 10 9 7 21 21 O 1.21302 * 118.27570 * 144.96891 * 20 10 9 22 22 N 1.33105 * 123.44728 * 324.97745 * 20 10 9 23 23 H 1.09001 * 109.47103 * 300.00468 * 1 2 3 24 24 H 1.09004 * 109.47054 * 59.99972 * 1 2 3 25 25 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.82277 * 359.94454 * 4 3 2 27 27 H 1.07999 * 119.84050 * 180.26307 * 5 4 3 28 28 H 1.07995 * 120.05692 * 180.14953 * 8 7 6 29 29 H 0.97001 * 120.00210 * 180.02562 * 15 14 12 30 30 H 0.96998 * 117.09048 * 179.09460 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2925 2.3763 -0.0059 5 6 1.9136 3.6094 0.0002 6 6 3.3013 3.6965 0.0014 7 6 4.0555 2.5226 -0.0006 8 6 3.4311 1.2861 0.0000 9 16 5.8169 2.6258 -0.0086 10 6 6.0948 4.1754 -0.9159 11 1 7.1219 4.5083 -0.7665 12 6 5.8460 3.9509 -2.3851 13 1 5.0760 4.5113 -2.8944 14 6 6.6014 3.0296 -3.0793 15 7 7.5393 2.3473 -2.4593 16 14 6.2935 2.7516 -4.9007 17 1 6.5097 4.0220 -5.6387 18 1 7.2313 1.7185 -5.4092 19 1 4.8954 2.2939 -5.1022 20 6 5.1464 5.2217 -0.3990 21 8 5.5306 6.3711 -0.3490 22 7 3.9076 4.9527 0.0067 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2141 2.3182 -0.0113 27 1 1.3187 4.5108 -0.0001 28 1 4.0217 0.3820 0.0008 29 1 8.0710 1.6994 -2.9477 30 1 3.3793 5.6966 0.3359 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214240589.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:07 Heat of formation + Delta-G solvation = -65.491371 kcal Electronic energy + Delta-G solvation = -17631.174462 eV Core-core repulsion = 14710.029024 eV Total energy + Delta-G solvation = -2921.145438 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.59216 -40.61174 -38.56767 -35.66030 -35.34686 -32.24255 -31.29175 -29.99521 -27.94869 -26.22809 -23.94280 -23.71139 -21.24199 -19.44635 -19.04178 -18.78597 -18.40024 -16.91704 -16.85910 -16.53962 -16.36827 -16.03477 -15.52576 -14.82927 -14.55370 -14.47809 -14.16665 -13.92426 -13.55702 -13.15211 -13.05427 -12.61803 -12.51891 -12.40357 -12.23186 -11.86618 -11.44597 -11.09711 -10.90213 -10.64077 -10.24868 -8.85006 -8.53693 -7.86596 -6.53066 0.09967 0.29449 0.95397 1.38140 1.41909 1.48153 1.53439 1.88521 2.12341 2.32238 2.52794 2.74108 3.09856 3.60719 3.77753 4.09048 4.20512 4.40823 4.50945 4.52190 4.63862 4.79128 4.90864 4.99486 5.07265 5.28754 5.41336 5.51925 5.58263 5.74069 6.16690 6.40182 6.51988 6.94712 7.10733 8.67747 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.017724 B = 0.008330 C = 0.006781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.442695 B = 3360.732808 C = 4128.388564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.120 3.880 4 C -0.177 4.177 5 C -0.088 4.088 6 C 0.097 3.903 7 C -0.071 4.071 8 C -0.127 4.127 9 S -0.181 6.181 10 C 0.064 3.936 11 H 0.075 0.925 12 C -0.525 4.525 13 H 0.060 0.940 14 C 0.038 3.962 15 N -0.859 5.859 16 Si 0.969 3.031 17 H -0.267 1.267 18 H -0.271 1.271 19 H -0.268 1.268 20 C 0.537 3.463 21 O -0.575 6.575 22 N -0.640 5.640 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.117 0.883 26 H 0.173 0.827 27 H 0.167 0.833 28 H 0.125 0.875 29 H 0.276 0.724 30 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.022 -3.812 3.871 16.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.249 6.249 3 C 0.072 3.928 4 C -0.199 4.199 5 C -0.110 4.110 6 C -0.004 4.004 7 C -0.187 4.187 8 C -0.152 4.152 9 S 0.068 5.932 10 C -0.063 4.063 11 H 0.092 0.908 12 C -0.568 4.568 13 H 0.078 0.922 14 C -0.171 4.171 15 N -0.493 5.493 16 Si 0.792 3.208 17 H -0.192 1.192 18 H -0.195 1.195 19 H -0.193 1.193 20 C 0.324 3.676 21 O -0.456 6.456 22 N -0.283 5.283 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.135 0.865 26 H 0.191 0.809 27 H 0.184 0.816 28 H 0.143 0.857 29 H 0.085 0.915 30 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -14.402 -4.417 4.339 15.677 hybrid contribution -0.660 1.022 -1.185 1.699 sum -15.063 -3.395 3.154 15.759 Atomic orbital electron populations 1.23406 0.76089 1.05650 1.02663 1.86067 1.23785 1.26210 1.88838 1.18806 0.91000 0.85488 0.97476 1.21284 1.01522 0.90089 1.06985 1.20929 0.90036 0.99843 1.00157 1.17742 0.93073 0.83355 1.06254 1.21359 0.97308 0.94751 1.05297 1.19913 0.92581 0.95821 1.06851 1.85683 0.99038 1.40206 1.68257 1.21034 0.96914 0.89301 0.99037 0.90773 1.20895 1.20544 1.24064 0.91300 0.92171 1.25728 0.93837 0.94118 1.03437 1.70025 1.18969 1.22139 1.38122 0.85435 0.78703 0.78475 0.78185 1.19226 1.19541 1.19340 1.20480 0.82531 0.89733 0.74861 1.90635 1.76222 1.22313 1.56439 1.42710 1.13930 1.09776 1.61917 0.90951 0.91493 0.86457 0.80925 0.81590 0.85722 0.91466 0.74725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -8.74 10.50 -93.13 -0.98 -9.72 16 3 C 0.12 3.59 6.69 22.50 0.15 3.74 16 4 C -0.18 -4.23 9.03 22.35 0.20 -4.02 16 5 C -0.09 -2.33 9.82 22.42 0.22 -2.11 16 6 C 0.10 3.54 6.55 38.43 0.25 3.79 16 7 C -0.07 -2.99 5.95 22.65 0.13 -2.86 16 8 C -0.13 -4.78 9.73 22.44 0.22 -4.56 16 9 S -0.18 -8.96 20.31 -56.49 -1.15 -10.11 16 10 C 0.06 3.42 2.67 29.00 0.08 3.50 16 11 H 0.07 4.33 8.14 -2.39 -0.02 4.31 16 12 C -0.53 -28.87 8.50 25.60 0.22 -28.65 16 13 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 14 C 0.04 2.02 5.28 84.66 0.45 2.47 16 15 N -0.86 -47.47 12.21 21.45 0.26 -47.21 16 16 Si 0.97 42.04 29.54 68.60 2.03 44.07 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 18 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 20 C 0.54 25.78 6.80 87.81 0.60 26.38 16 21 O -0.58 -29.74 17.77 -3.10 -0.06 -29.80 16 22 N -0.64 -24.66 5.09 -305.62 -1.56 -26.21 16 23 H 0.07 0.78 7.68 -2.39 -0.02 0.76 16 24 H 0.07 0.81 7.65 -2.38 -0.02 0.79 16 25 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.17 2.55 6.29 -2.91 -0.02 2.53 16 27 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 28 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 29 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.41 12.87 8.59 -92.71 -0.80 12.08 16 Total: -1.00 -68.16 276.20 2.57 -65.59 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.39 Total: 14.36 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 3.63 Total: -0.97 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -1.29 Total: -73.42 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -1.03 Total: -39.52 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.15 Total: -10.11 kcal Total: -68.16 2.57 -65.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214240589.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.100 kcal (2) G-P(sol) polarization free energy of solvation -68.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds