Wall clock time and date at job start Mon Mar 30 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35976 * 117.00058 * 2 1 4 4 C 1.38563 * 119.92206 * 359.97438 * 3 2 1 5 5 C 1.38237 * 120.35339 * 180.02562 * 4 3 2 6 6 C 1.38273 * 119.98015 * 359.93332 * 5 4 3 7 7 C 1.38629 * 120.01538 * 0.02562 * 6 5 4 8 8 C 1.39384 * 120.46635 * 0.10734 * 7 6 5 9 9 N 1.39495 * 121.57507 * 179.78031 * 8 7 6 10 10 C 1.33114 * 125.83602 * 22.04654 * 9 8 7 11 11 O 1.21299 * 118.28126 * 178.98747 * 10 9 8 12 12 C 1.50376 * 123.43968 * 359.26288 * 10 9 8 13 13 H 1.09001 * 109.55338 * 205.13636 * 12 10 9 14 14 C 1.50694 * 109.55121 * 84.83603 * 12 10 9 15 15 H 1.08004 * 120.00552 * 0.02562 * 14 12 10 16 16 C 1.37886 * 120.00266 * 180.02562 * 14 12 10 17 17 N 1.31515 * 119.99304 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00204 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47238 * 60.00374 * 18 16 14 20 20 H 1.48501 * 109.46894 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47119 * 300.00095 * 18 16 14 22 22 S 1.76433 * 120.16253 * 180.12417 * 7 6 5 23 23 H 1.09003 * 109.46928 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47238 * 300.00309 * 1 2 3 25 25 H 1.08997 * 109.47392 * 60.00244 * 1 2 3 26 26 H 1.08004 * 119.82596 * 0.02562 * 4 3 2 27 27 H 1.08004 * 120.01093 * 179.91109 * 5 4 3 28 28 H 1.08000 * 119.99407 * 179.97438 * 6 5 4 29 29 H 0.97004 * 117.08352 * 202.02394 * 9 8 7 30 30 H 0.97000 * 119.99427 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2901 2.3726 -0.0005 5 6 1.9084 3.6090 -0.0011 6 6 3.2887 3.6913 0.0003 7 6 4.0523 2.5343 0.0017 8 6 3.4390 1.2827 -0.0005 9 7 4.1847 0.1038 -0.0037 10 6 5.4470 -0.0210 0.4000 11 8 5.9590 -1.1197 0.3548 12 6 6.2698 1.1277 0.9148 13 1 7.3280 0.9158 0.7619 14 6 5.9996 1.3228 2.3844 15 1 5.3005 0.6773 2.8954 16 6 6.6449 2.3254 3.0769 17 7 7.4958 3.1117 2.4546 18 14 6.3094 2.5677 4.8985 19 1 6.6713 1.3313 5.6372 20 1 7.1228 3.7022 5.4049 21 1 4.8681 2.8618 5.1015 22 16 5.8138 2.6347 0.0068 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.2118 2.3114 -0.0005 27 1 1.3136 4.5105 -0.0029 28 1 3.7720 4.6571 -0.0005 29 1 3.7440 -0.6968 -0.3290 30 1 7.9495 3.8173 2.9417 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214240676.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:10 Heat of formation + Delta-G solvation = -45.194024 kcal Electronic energy + Delta-G solvation = -17870.692814 eV Core-core repulsion = 14950.427535 eV Total energy + Delta-G solvation = -2920.265279 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.26086 -38.85944 -37.02268 -34.50083 -33.44450 -29.93809 -29.51555 -28.99916 -27.08915 -24.30273 -22.70916 -21.94505 -19.57870 -18.23495 -17.13680 -17.03231 -16.60657 -15.68019 -15.29662 -15.27542 -14.85205 -14.28148 -14.15529 -13.40591 -13.28799 -12.85070 -12.59864 -12.38049 -11.76499 -11.46577 -11.22715 -11.14134 -11.03240 -10.67524 -10.50955 -10.38092 -10.16291 -9.59200 -9.04267 -8.73250 -8.43587 -7.41364 -6.67165 -6.01456 -4.47650 1.53741 1.73600 2.66440 3.12802 3.20588 3.22567 3.28231 3.47131 3.73132 3.86933 4.13545 4.21987 5.01711 5.09630 5.17059 5.19534 5.27133 5.40595 5.45661 5.64781 5.79201 6.02558 6.35109 6.59018 6.70622 6.80640 6.93454 7.27765 7.45524 7.47510 7.57662 7.97631 8.44294 8.73034 9.11209 10.63039 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.019350 B = 0.008234 C = 0.007679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.657042 B = 3399.519464 C = 3645.551044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.322 6.322 3 C 0.099 3.901 4 C -0.200 4.200 5 C -0.096 4.096 6 C -0.109 4.109 7 C -0.054 4.054 8 C 0.131 3.869 9 N -0.651 5.651 10 C 0.536 3.464 11 O -0.547 6.547 12 C 0.066 3.934 13 H 0.108 0.892 14 C -0.499 4.499 15 H 0.069 0.931 16 C 0.078 3.922 17 N -0.832 5.832 18 Si 0.909 3.091 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.271 1.271 22 S -0.149 6.149 23 H 0.095 0.905 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.130 0.870 29 H 0.401 0.599 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.379 1.029 -4.182 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.236 6.236 3 C 0.050 3.950 4 C -0.223 4.223 5 C -0.117 4.117 6 C -0.133 4.133 7 C -0.171 4.171 8 C 0.028 3.972 9 N -0.294 5.294 10 C 0.324 3.676 11 O -0.426 6.426 12 C -0.060 4.060 13 H 0.126 0.874 14 C -0.543 4.543 15 H 0.087 0.913 16 C -0.134 4.134 17 N -0.465 5.465 18 Si 0.735 3.265 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.196 1.196 22 S 0.102 5.898 23 H 0.114 0.886 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.143 0.857 27 H 0.141 0.859 28 H 0.148 0.852 29 H 0.237 0.763 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.745 1.405 -4.639 11.787 hybrid contribution -1.527 -0.835 1.400 2.234 sum -12.272 0.571 -3.239 12.705 Atomic orbital electron populations 1.22969 0.78659 1.03443 1.01168 1.85988 1.21149 1.26937 1.89545 1.18557 0.89896 0.84762 1.01745 1.20808 0.99183 0.91816 1.10478 1.20754 0.94137 0.96593 1.00255 1.20685 0.92920 0.96977 1.02745 1.21523 1.00083 0.92672 1.02813 1.16852 0.87011 0.86477 1.06892 1.42906 1.13191 1.10366 1.62900 1.20834 0.80706 0.91392 0.74652 1.90661 1.69755 1.27356 1.54787 1.21345 0.98658 0.87242 0.98800 0.87430 1.20814 1.26230 1.16757 0.90525 0.91308 1.24978 0.94106 0.94736 0.99549 1.69922 1.23428 1.16494 1.36643 0.86352 0.78906 0.78183 0.83084 1.19644 1.20523 1.19615 1.85857 0.93589 1.42270 1.68050 0.88644 0.92785 0.92859 0.85679 0.85851 0.85213 0.76260 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -4.93 9.70 -19.66 -0.19 -5.12 16 3 C 0.10 1.70 6.70 -39.01 -0.26 1.44 16 4 C -0.20 -2.93 9.02 -39.46 -0.36 -3.29 16 5 C -0.10 -1.43 10.05 -39.57 -0.40 -1.83 16 6 C -0.11 -1.95 9.78 -39.42 -0.39 -2.34 16 7 C -0.05 -1.14 5.95 -39.01 -0.23 -1.37 16 8 C 0.13 2.67 6.56 -83.50 -0.55 2.12 16 9 N -0.65 -13.88 5.04 -10.17 -0.05 -13.93 16 10 C 0.54 13.07 6.80 -11.88 -0.08 12.99 16 11 O -0.55 -14.28 17.77 5.54 0.10 -14.19 16 12 C 0.07 1.69 2.67 -29.19 -0.08 1.61 16 13 H 0.11 2.93 8.14 -51.93 -0.42 2.51 16 14 C -0.50 -13.44 8.50 -34.44 -0.29 -13.73 16 15 H 0.07 1.88 7.74 -52.48 -0.41 1.48 16 16 C 0.08 2.04 5.28 -17.82 -0.09 1.95 16 17 N -0.83 -22.14 12.21 55.43 0.68 -21.46 16 18 Si 0.91 20.32 29.54 -169.99 -5.02 15.30 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 S -0.15 -3.54 20.31 -107.50 -2.18 -5.72 16 23 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 25 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 26 H 0.13 1.41 6.26 -52.48 -0.33 1.08 16 27 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 28 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 29 H 0.40 7.75 7.96 -40.82 -0.33 7.43 16 30 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 274.98 15.07 4.14 4.14 Total: -1.00 -29.91 274.98 -6.94 -36.86 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -2.68 Total: 5.25 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.74 Total: -1.13 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.63 Total: -35.39 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.09 Total: -19.31 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.18 Total: -5.72 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.91 -6.94 -36.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214240676.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.338 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds