Wall clock time and date at job start Mon Mar 30 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35976 * 117.00058 * 2 1 4 4 C 1.38563 * 119.92206 * 359.97438 * 3 2 1 5 5 C 1.38237 * 120.35339 * 180.02562 * 4 3 2 6 6 C 1.38273 * 119.98015 * 359.93332 * 5 4 3 7 7 C 1.38629 * 120.01538 * 0.02562 * 6 5 4 8 8 C 1.39384 * 120.46635 * 0.10734 * 7 6 5 9 9 N 1.39495 * 121.57507 * 179.78031 * 8 7 6 10 10 C 1.33114 * 125.83602 * 22.04654 * 9 8 7 11 11 O 1.21299 * 118.28126 * 178.98747 * 10 9 8 12 12 C 1.50376 * 123.43968 * 359.26288 * 10 9 8 13 13 H 1.09001 * 109.55338 * 205.13636 * 12 10 9 14 14 C 1.50694 * 109.55121 * 84.83603 * 12 10 9 15 15 H 1.08004 * 120.00552 * 0.02562 * 14 12 10 16 16 C 1.37886 * 120.00266 * 180.02562 * 14 12 10 17 17 N 1.31515 * 119.99304 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00204 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47238 * 60.00374 * 18 16 14 20 20 H 1.48501 * 109.46894 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47119 * 300.00095 * 18 16 14 22 22 S 1.76433 * 120.16253 * 180.12417 * 7 6 5 23 23 H 1.09003 * 109.46928 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47238 * 300.00309 * 1 2 3 25 25 H 1.08997 * 109.47392 * 60.00244 * 1 2 3 26 26 H 1.08004 * 119.82596 * 0.02562 * 4 3 2 27 27 H 1.08004 * 120.01093 * 179.91109 * 5 4 3 28 28 H 1.08000 * 119.99407 * 179.97438 * 6 5 4 29 29 H 0.97004 * 117.08352 * 202.02394 * 9 8 7 30 30 H 0.97000 * 119.99427 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2901 2.3726 -0.0005 5 6 1.9084 3.6090 -0.0011 6 6 3.2887 3.6913 0.0003 7 6 4.0523 2.5343 0.0017 8 6 3.4390 1.2827 -0.0005 9 7 4.1847 0.1038 -0.0037 10 6 5.4470 -0.0210 0.4000 11 8 5.9590 -1.1197 0.3548 12 6 6.2698 1.1277 0.9148 13 1 7.3280 0.9158 0.7619 14 6 5.9996 1.3228 2.3844 15 1 5.3005 0.6773 2.8954 16 6 6.6449 2.3254 3.0769 17 7 7.4958 3.1117 2.4546 18 14 6.3094 2.5677 4.8985 19 1 6.6713 1.3313 5.6372 20 1 7.1228 3.7022 5.4049 21 1 4.8681 2.8618 5.1015 22 16 5.8138 2.6347 0.0068 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.2118 2.3114 -0.0005 27 1 1.3136 4.5105 -0.0029 28 1 3.7720 4.6571 -0.0005 29 1 3.7440 -0.6968 -0.3290 30 1 7.9495 3.8173 2.9417 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214240676.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:10 Heat of formation + Delta-G solvation = -65.339391 kcal Electronic energy + Delta-G solvation = -17871.566383 eV Core-core repulsion = 14950.427535 eV Total energy + Delta-G solvation = -2921.138848 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.75987 -40.46873 -38.34055 -36.15645 -35.41717 -31.53679 -31.13181 -30.47136 -28.06100 -26.25610 -24.23237 -23.27677 -21.28202 -19.63758 -19.04746 -18.55054 -18.36111 -16.90665 -16.87436 -16.59895 -16.52329 -15.96832 -15.66801 -15.02628 -14.64573 -14.49414 -14.19830 -13.89887 -13.18639 -13.12392 -12.82758 -12.63381 -12.50252 -12.18631 -12.07906 -11.98747 -11.70909 -11.50083 -10.88393 -10.61266 -10.02302 -8.82458 -8.57464 -7.87472 -6.53491 0.07060 0.37300 0.97819 1.37769 1.41429 1.47423 1.52154 1.81783 2.13543 2.32424 2.40825 2.77688 3.08772 3.57786 3.96945 4.01298 4.25786 4.44628 4.48176 4.51956 4.57471 4.68900 4.79674 5.04206 5.28564 5.40825 5.49411 5.55553 5.65533 5.71335 6.06273 6.39075 6.46704 6.90982 7.10044 8.67897 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.019350 B = 0.008234 C = 0.007679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.657042 B = 3399.519464 C = 3645.551044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.105 3.895 4 C -0.184 4.184 5 C -0.075 4.075 6 C -0.121 4.121 7 C -0.080 4.080 8 C 0.093 3.907 9 N -0.640 5.640 10 C 0.534 3.466 11 O -0.579 6.579 12 C 0.065 3.935 13 H 0.074 0.926 14 C -0.527 4.527 15 H 0.055 0.945 16 C 0.040 3.960 17 N -0.858 5.858 18 Si 0.970 3.030 19 H -0.271 1.271 20 H -0.267 1.267 21 H -0.267 1.267 22 S -0.172 6.172 23 H 0.116 0.884 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.172 0.828 27 H 0.172 0.828 28 H 0.136 0.864 29 H 0.410 0.590 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.277 2.327 -3.869 16.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.056 3.944 4 C -0.205 4.205 5 C -0.095 4.095 6 C -0.145 4.145 7 C -0.196 4.196 8 C -0.009 4.009 9 N -0.282 5.282 10 C 0.322 3.678 11 O -0.460 6.460 12 C -0.062 4.062 13 H 0.092 0.908 14 C -0.570 4.570 15 H 0.073 0.927 16 C -0.169 4.169 17 N -0.491 5.491 18 Si 0.793 3.207 19 H -0.196 1.196 20 H -0.191 1.191 21 H -0.192 1.192 22 S 0.078 5.922 23 H 0.134 0.866 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.190 0.810 27 H 0.189 0.811 28 H 0.154 0.846 29 H 0.247 0.753 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.718 2.718 -4.339 15.583 hybrid contribution -0.590 -1.214 1.182 1.794 sum -15.308 1.503 -3.157 15.702 Atomic orbital electron populations 1.23399 0.75602 1.05627 1.02810 1.85989 1.24217 1.26174 1.89095 1.18672 0.88799 0.86562 1.00369 1.21382 1.01348 0.90489 1.07294 1.21281 0.92780 0.98635 0.96817 1.20937 0.94505 0.96084 1.02971 1.21578 0.97872 0.94446 1.05671 1.17149 0.88650 0.85562 1.09532 1.42648 1.12122 1.11508 1.61885 1.20612 0.81793 0.90568 0.74829 1.90618 1.70810 1.27996 1.56574 1.21007 0.97405 0.88685 0.99117 0.90804 1.20855 1.27254 1.17680 0.91237 0.92721 1.25705 0.93661 0.94075 1.03457 1.70021 1.24071 1.16911 1.38131 0.85421 0.78921 0.78333 0.78012 1.19608 1.19134 1.19231 1.85558 0.97627 1.40878 1.68161 0.86567 0.91424 0.90653 0.81035 0.81093 0.84646 0.75305 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.34 -9.39 9.70 -93.28 -0.90 -10.29 16 3 C 0.10 3.29 6.70 22.64 0.15 3.45 16 4 C -0.18 -4.38 9.02 22.35 0.20 -4.18 16 5 C -0.07 -1.83 10.05 22.28 0.22 -1.61 16 6 C -0.12 -4.07 9.78 22.37 0.22 -3.85 16 7 C -0.08 -3.34 5.95 22.64 0.13 -3.21 16 8 C 0.09 3.73 6.56 38.49 0.25 3.98 16 9 N -0.64 -27.95 5.04 -305.40 -1.54 -29.49 16 10 C 0.53 27.44 6.80 87.81 0.60 28.03 16 11 O -0.58 -31.90 17.77 -3.09 -0.05 -31.96 16 12 C 0.07 3.56 2.67 29.00 0.08 3.64 16 13 H 0.07 4.40 8.14 -2.39 -0.02 4.38 16 14 C -0.53 -29.65 8.50 25.60 0.22 -29.44 16 15 H 0.05 3.13 7.74 -2.91 -0.02 3.11 16 16 C 0.04 2.15 5.28 84.66 0.45 2.59 16 17 N -0.86 -47.07 12.21 21.45 0.26 -46.81 16 18 Si 0.97 42.05 29.54 68.60 2.03 44.08 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 S -0.17 -8.47 20.31 -56.49 -1.15 -9.61 16 23 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.07 0.89 7.65 -2.39 -0.02 0.87 16 25 H 0.07 0.86 7.65 -2.39 -0.02 0.84 16 26 H 0.17 2.55 6.26 -2.91 -0.02 2.53 16 27 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 28 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 29 H 0.41 16.13 7.96 -92.71 -0.74 15.39 16 30 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -69.00 274.98 2.73 -66.27 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.45 Total: 16.99 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 3.63 Total: 0.83 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -1.28 Total: -76.30 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -0.96 Total: -42.25 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.15 Total: -9.61 kcal Total: -69.00 2.73 -66.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214240676.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.931 kcal (2) G-P(sol) polarization free energy of solvation -68.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds