Wall clock time and date at job start Mon Mar 30 2020 06:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35981 * 116.99586 * 2 1 4 4 C 1.38555 * 119.92631 * 359.97438 * 3 2 1 5 5 C 1.38245 * 120.35429 * 179.97438 * 4 3 2 6 6 C 1.38276 * 119.97481 * 359.92045 * 5 4 3 7 7 C 1.38623 * 120.01556 * 0.06537 * 6 5 4 8 8 C 1.39378 * 120.47078 * 359.78813 * 7 6 5 9 9 N 1.39513 * 121.56684 * 179.26540 * 8 7 6 10 10 C 1.33115 * 125.70305 * 22.94838 * 9 8 7 11 11 O 1.21309 * 118.29012 * 178.86573 * 10 9 8 12 12 C 1.50378 * 123.42142 * 358.88895 * 10 9 8 13 13 H 1.08992 * 109.63982 * 84.81531 * 12 10 9 14 14 C 1.50702 * 109.55635 * 205.07716 * 12 10 9 15 15 H 1.07997 * 119.99889 * 359.47886 * 14 12 10 16 16 C 1.37883 * 120.00091 * 179.48388 * 14 12 10 17 17 N 1.31506 * 119.99677 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99891 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46959 * 59.99810 * 18 16 14 20 20 H 1.48494 * 109.46816 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46928 * 299.99862 * 18 16 14 22 22 S 1.76445 * 120.16660 * 180.17893 * 7 6 5 23 23 H 1.09000 * 109.47187 * 300.00193 * 1 2 3 24 24 H 1.09001 * 109.46558 * 60.00241 * 1 2 3 25 25 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.82141 * 359.97438 * 4 3 2 27 27 H 1.07993 * 120.00908 * 179.90569 * 5 4 3 28 28 H 1.08006 * 119.98764 * 180.02562 * 6 5 4 29 29 H 0.96994 * 117.19099 * 202.67016 * 9 8 7 30 30 H 0.97010 * 120.00019 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2901 2.3726 -0.0005 5 6 1.9084 3.6091 0.0000 6 6 3.2887 3.6913 0.0027 7 6 4.0523 2.5343 0.0036 8 6 3.4390 1.2827 0.0061 9 7 4.1849 0.1038 -0.0082 10 6 5.4467 -0.0221 0.3968 11 8 5.9606 -1.1196 0.3442 12 6 6.2681 1.1253 0.9166 13 1 6.0719 1.2643 1.9797 14 6 7.7317 0.8333 0.7077 15 1 8.0370 -0.0967 0.2513 16 6 8.6811 1.7533 1.0992 17 7 8.3093 2.8859 1.6545 18 14 10.4953 1.3910 0.8409 19 1 10.7599 1.1966 -0.6074 20 1 11.3040 2.5308 1.3427 21 1 10.8640 0.1577 1.5814 22 16 5.8139 2.6345 0.0118 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2118 2.3113 -0.0014 27 1 1.3136 4.5104 -0.0020 28 1 3.7720 4.6572 0.0036 29 1 3.7450 -0.6950 -0.3386 30 1 8.9772 3.5332 1.9304 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214240734.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:11 Heat of formation + Delta-G solvation = -64.868096 kcal Electronic energy + Delta-G solvation = -17574.686676 eV Core-core repulsion = 14653.568265 eV Total energy + Delta-G solvation = -2921.118411 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.75721 -40.47440 -38.37387 -36.14094 -35.42256 -31.49801 -31.14660 -30.52288 -28.08254 -26.41052 -24.10093 -23.25951 -21.29797 -19.71437 -18.93288 -18.56871 -18.05675 -17.13130 -16.84642 -16.60867 -16.45027 -16.27847 -15.64566 -15.03871 -14.65359 -14.44537 -14.30820 -13.92911 -13.18433 -13.02287 -12.82313 -12.63106 -12.30161 -12.18072 -12.03710 -11.76360 -11.70918 -11.61619 -10.75345 -10.74973 -10.05423 -8.85705 -8.45592 -8.08301 -6.53262 0.03758 0.34358 0.86874 1.39952 1.44566 1.47447 1.53012 1.89049 2.09935 2.34937 2.40638 2.71795 3.03964 3.57325 3.94096 3.99023 4.24597 4.44644 4.47153 4.50728 4.58057 4.63663 4.78890 5.02293 5.26758 5.43882 5.47055 5.50876 5.69034 5.73179 6.07956 6.43853 6.48988 6.94326 7.08769 8.63287 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.032855 B = 0.006461 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.021546 B = 4332.359569 C = 5073.341804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.106 3.894 4 C -0.182 4.182 5 C -0.073 4.073 6 C -0.118 4.118 7 C -0.113 4.113 8 C 0.086 3.914 9 N -0.646 5.646 10 C 0.522 3.478 11 O -0.558 6.558 12 C 0.071 3.929 13 H 0.052 0.948 14 C -0.508 4.508 15 H 0.072 0.928 16 C 0.028 3.972 17 N -0.865 5.865 18 Si 0.978 3.022 19 H -0.269 1.269 20 H -0.267 1.267 21 H -0.267 1.267 22 S -0.157 6.157 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.116 0.884 26 H 0.173 0.827 27 H 0.173 0.827 28 H 0.138 0.862 29 H 0.410 0.590 30 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.846 2.277 -2.848 17.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.058 3.942 4 C -0.203 4.203 5 C -0.094 4.094 6 C -0.142 4.142 7 C -0.229 4.229 8 C -0.016 4.016 9 N -0.290 5.290 10 C 0.309 3.691 11 O -0.437 6.437 12 C -0.056 4.056 13 H 0.070 0.930 14 C -0.552 4.552 15 H 0.090 0.910 16 C -0.181 4.181 17 N -0.499 5.499 18 Si 0.800 3.200 19 H -0.194 1.194 20 H -0.191 1.191 21 H -0.192 1.192 22 S 0.093 5.907 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.134 0.866 26 H 0.190 0.810 27 H 0.190 0.810 28 H 0.155 0.845 29 H 0.247 0.753 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.473 2.712 -3.150 16.021 hybrid contribution -0.040 -1.341 0.424 1.407 sum -15.512 1.372 -2.727 15.810 Atomic orbital electron populations 1.23410 0.75538 1.05662 1.02861 1.86001 1.24261 1.26174 1.89038 1.18680 0.88742 0.86583 1.00235 1.21408 1.01396 0.90471 1.07050 1.21324 0.92840 0.98645 0.96571 1.20962 0.94445 0.96057 1.02722 1.22146 0.99841 0.94563 1.06310 1.17213 0.88764 0.85599 1.10003 1.42830 1.12158 1.11684 1.62287 1.20728 0.81071 0.90922 0.76389 1.90602 1.69748 1.27788 1.55588 1.20813 0.98151 0.89410 0.97223 0.93016 1.20947 0.87614 1.04729 1.41894 0.91026 1.25969 1.04735 0.94199 0.93149 1.70043 1.36517 1.07589 1.35792 0.85293 0.77107 0.78465 0.79100 1.19394 1.19142 1.19208 1.86667 0.94510 1.38532 1.70948 0.91156 0.90798 0.86593 0.80980 0.81001 0.84467 0.75291 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -8.87 9.70 -93.34 -0.91 -9.78 16 3 C 0.11 3.16 6.70 22.64 0.15 3.31 16 4 C -0.18 -3.99 9.02 22.35 0.20 -3.79 16 5 C -0.07 -1.65 10.05 22.28 0.22 -1.43 16 6 C -0.12 -3.72 9.78 22.37 0.22 -3.50 16 7 C -0.11 -4.58 5.99 22.64 0.14 -4.45 16 8 C 0.09 3.32 6.55 38.49 0.25 3.57 16 9 N -0.65 -27.68 5.04 -305.38 -1.54 -29.22 16 10 C 0.52 26.80 7.37 87.81 0.65 27.45 16 11 O -0.56 -31.08 16.37 -3.12 -0.05 -31.14 16 12 C 0.07 3.92 2.77 29.00 0.08 4.00 16 13 H 0.05 3.04 8.14 -2.39 -0.02 3.03 16 14 C -0.51 -29.46 8.31 25.60 0.21 -29.25 16 15 H 0.07 4.31 6.96 -2.91 -0.02 4.29 16 16 C 0.03 1.51 5.28 84.66 0.45 1.96 16 17 N -0.87 -48.10 12.18 21.45 0.26 -47.84 16 18 Si 0.98 43.20 29.54 68.60 2.03 45.23 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 S -0.16 -7.85 20.26 -56.49 -1.14 -8.99 16 23 H 0.07 0.79 7.65 -2.39 -0.02 0.77 16 24 H 0.07 0.77 7.65 -2.39 -0.02 0.75 16 25 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.17 2.25 6.26 -2.91 -0.02 2.23 16 27 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 28 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 29 H 0.41 15.89 7.97 -92.71 -0.74 15.15 16 30 H 0.28 14.38 8.31 -92.70 -0.77 13.61 16 Total: -1.00 -70.16 273.25 2.78 -67.38 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.45 Total: 15.10 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 3.68 Total: -0.74 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -1.28 Total: -77.06 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -0.96 Total: -40.91 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -1.14 Total: -8.99 kcal Total: -70.16 2.78 -67.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214240734.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.511 kcal (2) G-P(sol) polarization free energy of solvation -70.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds