Wall clock time and date at job start Mon Mar 30 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36002 * 116.99669 * 2 1 4 4 C 1.38722 * 119.85376 * 0.02748 * 3 2 1 5 5 C 1.38262 * 119.87581 * 179.89233 * 4 3 2 6 6 C 1.38504 * 119.99413 * 0.02562 * 5 4 3 7 7 C 1.39491 * 120.52164 * 0.15843 * 6 5 4 8 8 C 1.38497 * 119.85032 * 180.02562 * 3 2 1 9 9 N 1.39273 * 121.55575 * 179.71226 * 7 6 5 10 10 C 1.33106 * 125.86332 * 22.33563 * 9 7 6 11 11 O 1.21293 * 118.28734 * 179.11553 * 10 9 7 12 12 C 1.50389 * 123.43032 * 359.09288 * 10 9 7 13 13 H 1.09002 * 109.55852 * 205.15265 * 12 10 9 14 14 C 1.50697 * 109.55761 * 84.94303 * 12 10 9 15 15 H 1.08011 * 119.99940 * 0.20951 * 14 12 10 16 16 C 1.37878 * 120.00313 * 180.21377 * 14 12 10 17 17 N 1.31515 * 119.99830 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00084 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47264 * 59.99860 * 18 16 14 20 20 H 1.48503 * 109.46889 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47377 * 299.99757 * 18 16 14 22 22 S 1.76537 * 120.07565 * 180.44427 * 6 5 4 23 23 H 1.08999 * 109.47123 * 299.99713 * 1 2 3 24 24 H 1.08998 * 109.47191 * 59.99957 * 1 2 3 25 25 H 1.09001 * 109.46762 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.05765 * 359.90978 * 4 3 2 27 27 H 1.08004 * 119.99681 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.89295 * 0.03937 * 8 3 2 29 29 H 0.97006 * 117.07459 * 202.35901 * 9 7 6 30 30 H 0.96997 * 120.00352 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2878 2.3733 0.0006 5 6 1.9149 3.6055 0.0028 6 6 3.2981 3.6784 0.0040 7 6 4.0688 2.5158 -0.0005 8 6 3.4296 1.2808 -0.0005 9 7 5.4607 2.5641 -0.0054 10 6 6.2069 3.5877 0.4034 11 8 7.4136 3.4754 0.3534 12 6 5.6321 4.8764 0.9235 13 1 6.3503 5.6827 0.7744 14 6 5.3284 4.7366 2.3929 15 1 5.5352 3.8061 2.9009 16 6 4.7866 5.7964 3.0888 17 7 4.5352 6.9295 2.4703 18 14 4.4095 5.6228 4.9101 19 1 5.6606 5.3117 5.6472 20 1 3.8379 6.8948 5.4206 21 1 3.4307 4.5242 5.1104 22 16 4.1011 5.2505 0.0187 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2094 2.3150 -0.0004 27 1 1.3263 4.5110 0.0029 28 1 4.0138 0.3724 -0.0016 29 1 5.9284 1.7815 -0.3368 30 1 4.1544 7.6752 2.9599 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214240809.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:01 Heat of formation + Delta-G solvation = -45.793622 kcal Electronic energy + Delta-G solvation = -17621.311433 eV Core-core repulsion = 14701.020153 eV Total energy + Delta-G solvation = -2920.291280 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.14867 -39.19524 -37.17201 -34.26022 -33.44836 -30.56344 -29.35195 -28.75624 -27.16430 -24.29849 -22.51909 -22.33067 -19.71895 -17.98026 -17.10025 -16.93128 -16.61161 -15.96780 -15.62838 -15.40951 -14.68252 -14.36405 -13.84152 -13.37122 -13.16899 -13.05248 -12.65586 -12.41026 -12.21935 -11.50558 -11.30448 -11.17384 -10.86211 -10.80336 -10.55888 -10.35701 -10.00792 -9.59864 -9.01026 -8.68088 -8.32408 -7.85508 -6.61893 -5.93453 -4.47652 1.54920 1.69317 2.73718 3.16605 3.18559 3.21573 3.25036 3.29044 3.73485 3.90310 4.11106 4.20732 5.00586 5.09204 5.16242 5.18215 5.24042 5.37804 5.45221 5.61900 5.76873 6.11121 6.23816 6.52763 6.64989 6.70594 6.82052 7.18435 7.45120 7.52640 7.58230 7.83768 8.43502 8.61377 9.11492 10.63566 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.007805 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.177944 B = 3586.782899 C = 4165.269274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.134 3.866 4 C -0.219 4.219 5 C -0.036 4.036 6 C -0.117 4.117 7 C 0.198 3.802 8 C -0.179 4.179 9 N -0.658 5.658 10 C 0.539 3.461 11 O -0.543 6.543 12 C 0.067 3.933 13 H 0.108 0.892 14 C -0.502 4.502 15 H 0.068 0.932 16 C 0.079 3.921 17 N -0.832 5.832 18 Si 0.908 3.092 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.271 1.271 22 S -0.160 6.160 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.094 0.906 26 H 0.127 0.873 27 H 0.132 0.868 28 H 0.129 0.871 29 H 0.399 0.601 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.655 -8.624 -4.265 12.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.086 3.914 4 C -0.240 4.240 5 C -0.061 4.061 6 C -0.233 4.233 7 C 0.094 3.906 8 C -0.202 4.202 9 N -0.299 5.299 10 C 0.327 3.673 11 O -0.420 6.420 12 C -0.059 4.059 13 H 0.125 0.875 14 C -0.546 4.546 15 H 0.086 0.914 16 C -0.133 4.133 17 N -0.465 5.465 18 Si 0.734 3.266 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.196 1.196 22 S 0.089 5.911 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.113 0.887 26 H 0.144 0.856 27 H 0.150 0.850 28 H 0.147 0.853 29 H 0.234 0.766 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.279 -7.208 -4.710 11.945 hybrid contribution -0.034 -1.440 1.401 2.009 sum -8.313 -8.647 -3.309 12.443 Atomic orbital electron populations 1.22984 0.78832 1.03343 1.01373 1.86029 1.21000 1.27210 1.89282 1.18411 0.91345 0.83880 0.97794 1.21054 0.99476 0.91970 1.11496 1.20536 0.92078 0.97132 0.96306 1.21533 0.96367 0.96911 1.08481 1.17174 0.82450 0.92780 0.98171 1.19767 0.91901 0.96202 1.12341 1.43099 1.04619 1.19503 1.62702 1.20937 0.86643 0.85318 0.74380 1.90670 1.14528 1.82334 1.54512 1.21293 0.93307 0.92527 0.98818 0.87505 1.20789 1.42994 1.00273 0.90536 0.91392 1.24953 0.94261 0.94618 0.99460 1.69925 1.37474 1.02503 1.36569 0.86372 0.79104 0.77967 0.83181 1.19663 1.20555 1.19644 1.85795 1.28063 1.08357 1.68841 0.92710 0.92794 0.88725 0.85567 0.85042 0.85272 0.76568 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.46 10.49 -19.75 -0.21 -4.66 16 3 C 0.13 2.11 6.68 -39.31 -0.26 1.84 16 4 C -0.22 -3.33 9.04 -39.39 -0.36 -3.69 16 5 C -0.04 -0.64 9.78 -39.47 -0.39 -1.03 16 6 C -0.12 -2.42 5.95 -39.02 -0.23 -2.65 16 7 C 0.20 3.83 6.54 -83.71 -0.55 3.29 16 8 C -0.18 -3.01 9.76 -39.18 -0.38 -3.39 16 9 N -0.66 -13.04 5.08 -10.29 -0.05 -13.09 16 10 C 0.54 12.62 6.80 -11.88 -0.08 12.54 16 11 O -0.54 -13.63 17.77 5.55 0.10 -13.53 16 12 C 0.07 1.69 2.67 -29.19 -0.08 1.61 16 13 H 0.11 2.88 8.14 -51.93 -0.42 2.45 16 14 C -0.50 -13.32 8.51 -34.44 -0.29 -13.62 16 15 H 0.07 1.82 7.74 -52.48 -0.41 1.42 16 16 C 0.08 2.05 5.28 -17.82 -0.09 1.95 16 17 N -0.83 -22.05 12.19 55.43 0.68 -21.37 16 18 Si 0.91 20.21 29.54 -169.99 -5.02 15.19 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 S -0.16 -3.74 20.30 -107.50 -2.18 -5.92 16 23 H 0.05 0.49 7.65 -51.93 -0.40 0.09 16 24 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.13 1.52 6.28 -52.49 -0.33 1.19 16 27 H 0.13 2.18 8.06 -52.48 -0.42 1.76 16 28 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.40 6.68 8.59 -40.82 -0.35 6.33 16 30 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 276.12 15.07 4.16 4.16 Total: -1.00 -29.62 276.12 -6.95 -36.57 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -2.71 Total: 4.52 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -1.72 Total: -1.88 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.62 Total: -34.46 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.11 Total: -18.19 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -2.18 Total: -5.92 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.62 -6.95 -36.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214240809.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.219 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds