Wall clock time and date at job start Mon Mar 30 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36002 * 116.99669 * 2 1 4 4 C 1.38722 * 119.85376 * 0.02748 * 3 2 1 5 5 C 1.38262 * 119.87581 * 179.89233 * 4 3 2 6 6 C 1.38504 * 119.99413 * 0.02562 * 5 4 3 7 7 C 1.39491 * 120.52164 * 0.15843 * 6 5 4 8 8 C 1.38497 * 119.85032 * 180.02562 * 3 2 1 9 9 N 1.39273 * 121.55575 * 179.71226 * 7 6 5 10 10 C 1.33106 * 125.86332 * 22.33563 * 9 7 6 11 11 O 1.21293 * 118.28734 * 179.11553 * 10 9 7 12 12 C 1.50389 * 123.43032 * 359.09288 * 10 9 7 13 13 H 1.09002 * 109.55852 * 205.15265 * 12 10 9 14 14 C 1.50697 * 109.55761 * 84.94303 * 12 10 9 15 15 H 1.08011 * 119.99940 * 0.20951 * 14 12 10 16 16 C 1.37878 * 120.00313 * 180.21377 * 14 12 10 17 17 N 1.31515 * 119.99830 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00084 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47264 * 59.99860 * 18 16 14 20 20 H 1.48503 * 109.46889 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47377 * 299.99757 * 18 16 14 22 22 S 1.76537 * 120.07565 * 180.44427 * 6 5 4 23 23 H 1.08999 * 109.47123 * 299.99713 * 1 2 3 24 24 H 1.08998 * 109.47191 * 59.99957 * 1 2 3 25 25 H 1.09001 * 109.46762 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.05765 * 359.90978 * 4 3 2 27 27 H 1.08004 * 119.99681 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.89295 * 0.03937 * 8 3 2 29 29 H 0.97006 * 117.07459 * 202.35901 * 9 7 6 30 30 H 0.96997 * 120.00352 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2878 2.3733 0.0006 5 6 1.9149 3.6055 0.0028 6 6 3.2981 3.6784 0.0040 7 6 4.0688 2.5158 -0.0005 8 6 3.4296 1.2808 -0.0005 9 7 5.4607 2.5641 -0.0054 10 6 6.2069 3.5877 0.4034 11 8 7.4136 3.4754 0.3534 12 6 5.6321 4.8764 0.9235 13 1 6.3503 5.6827 0.7744 14 6 5.3284 4.7366 2.3929 15 1 5.5352 3.8061 2.9009 16 6 4.7866 5.7964 3.0888 17 7 4.5352 6.9295 2.4703 18 14 4.4095 5.6228 4.9101 19 1 5.6606 5.3117 5.6472 20 1 3.8379 6.8948 5.4206 21 1 3.4307 4.5242 5.1104 22 16 4.1011 5.2505 0.0187 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2094 2.3150 -0.0004 27 1 1.3263 4.5110 0.0029 28 1 4.0138 0.3724 -0.0016 29 1 5.9284 1.7815 -0.3368 30 1 4.1544 7.6752 2.9599 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214240809.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:01 Heat of formation + Delta-G solvation = -65.347965 kcal Electronic energy + Delta-G solvation = -17622.159373 eV Core-core repulsion = 14701.020153 eV Total energy + Delta-G solvation = -2921.139220 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.66910 -40.64039 -38.57019 -35.84469 -35.38372 -31.97333 -31.18306 -30.18406 -28.07804 -26.22224 -23.92197 -23.80141 -21.29076 -19.42272 -19.04829 -18.59767 -18.07709 -17.41658 -16.87777 -16.56802 -16.43064 -16.05289 -15.44776 -14.89208 -14.68950 -14.44904 -14.31196 -14.00228 -13.31011 -13.13008 -13.04615 -12.61317 -12.44431 -12.34855 -12.18805 -11.91942 -11.50925 -11.43402 -10.86082 -10.55214 -9.74992 -9.34546 -8.49807 -7.73965 -6.50914 0.08709 0.30114 1.04069 1.39115 1.43246 1.48225 1.53400 1.81440 2.02429 2.33080 2.55331 2.73305 3.11012 3.58326 3.78748 4.09211 4.20057 4.39202 4.50905 4.51796 4.61962 4.74157 4.84636 4.91558 5.19965 5.33325 5.42080 5.45670 5.59537 5.65852 6.12843 6.41448 6.45045 6.87013 7.12469 8.69935 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.007805 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.177944 B = 3586.782899 C = 4165.269274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.146 3.854 4 C -0.203 4.203 5 C -0.039 4.039 6 C -0.147 4.147 7 C 0.179 3.821 8 C -0.178 4.178 9 N -0.644 5.644 10 C 0.540 3.460 11 O -0.570 6.570 12 C 0.064 3.936 13 H 0.074 0.926 14 C -0.528 4.528 15 H 0.056 0.944 16 C 0.041 3.959 17 N -0.858 5.858 18 Si 0.968 3.032 19 H -0.271 1.271 20 H -0.269 1.269 21 H -0.269 1.269 22 S -0.180 6.180 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.122 0.878 26 H 0.167 0.833 27 H 0.140 0.860 28 H 0.151 0.849 29 H 0.414 0.586 30 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.411 -10.816 -4.009 16.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.098 3.902 4 C -0.224 4.224 5 C -0.063 4.063 6 C -0.263 4.263 7 C 0.077 3.923 8 C -0.200 4.200 9 N -0.286 5.286 10 C 0.328 3.672 11 O -0.451 6.451 12 C -0.064 4.064 13 H 0.091 0.909 14 C -0.571 4.571 15 H 0.075 0.925 16 C -0.169 4.169 17 N -0.492 5.492 18 Si 0.791 3.209 19 H -0.196 1.196 20 H -0.194 1.194 21 H -0.193 1.193 22 S 0.067 5.933 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.140 0.860 26 H 0.184 0.816 27 H 0.158 0.842 28 H 0.169 0.831 29 H 0.252 0.748 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.086 -9.453 -4.466 15.239 hybrid contribution 0.608 -0.941 1.214 1.653 sum -10.478 -10.395 -3.252 15.113 Atomic orbital electron populations 1.23406 0.76125 1.05738 1.02559 1.86053 1.23693 1.25830 1.88557 1.18526 0.91143 0.84975 0.95594 1.21407 1.01432 0.90492 1.09056 1.20739 0.90944 0.98808 0.95781 1.21595 0.97616 0.95294 1.11796 1.17339 0.81838 0.93594 0.99553 1.19967 0.92937 0.95770 1.11358 1.42798 1.05166 1.18957 1.61729 1.20604 0.86421 0.85686 0.74531 1.90637 1.15433 1.82926 1.56068 1.20995 0.93612 0.92692 0.99071 0.90851 1.20866 1.44566 1.00332 0.91317 0.92532 1.25666 0.93795 0.94150 1.03240 1.70025 1.38134 1.03030 1.38004 0.85457 0.78828 0.78283 0.78328 1.19575 1.19373 1.19347 1.85537 1.27553 1.11528 1.68694 0.91768 0.91214 0.86024 0.81611 0.84196 0.83089 0.74778 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.33 -7.56 10.49 -93.57 -0.98 -8.54 16 3 C 0.15 4.04 6.68 22.45 0.15 4.19 16 4 C -0.20 -5.37 9.04 22.39 0.20 -5.17 16 5 C -0.04 -1.31 9.78 22.34 0.22 -1.09 16 6 C -0.15 -6.03 5.95 22.64 0.13 -5.89 16 7 C 0.18 6.77 6.54 38.46 0.25 7.02 16 8 C -0.18 -5.49 9.76 22.53 0.22 -5.27 16 9 N -0.64 -25.64 5.08 -305.78 -1.55 -27.19 16 10 C 0.54 26.17 6.80 87.82 0.60 26.77 16 11 O -0.57 -29.73 17.77 -3.07 -0.05 -29.78 16 12 C 0.06 3.38 2.67 29.00 0.08 3.46 16 13 H 0.07 4.27 8.14 -2.39 -0.02 4.25 16 14 C -0.53 -28.97 8.51 25.60 0.22 -28.75 16 15 H 0.06 3.14 7.74 -2.90 -0.02 3.11 16 16 C 0.04 2.14 5.28 84.65 0.45 2.58 16 17 N -0.86 -46.66 12.19 21.45 0.26 -46.40 16 18 Si 0.97 41.65 29.54 68.60 2.03 43.67 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 S -0.18 -8.69 20.30 -56.49 -1.15 -9.84 16 23 H 0.06 0.79 7.65 -2.39 -0.02 0.77 16 24 H 0.07 0.77 7.65 -2.39 -0.02 0.75 16 25 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.17 3.05 6.28 -2.91 -0.02 3.03 16 27 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 28 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 29 H 0.41 13.70 8.59 -92.70 -0.80 12.90 16 30 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -65.86 276.12 2.57 -63.29 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.39 Total: 15.63 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 3.63 Total: -0.84 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: -1.29 Total: -73.59 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -1.04 Total: -38.33 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.15 Total: -9.84 kcal Total: -65.86 2.57 -63.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214240809.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.060 kcal (2) G-P(sol) polarization free energy of solvation -65.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds