Wall clock time and date at job start Mon Mar 30 2020 06:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36009 * 117.00281 * 2 1 4 4 C 1.38235 * 119.61942 * 0.02562 * 3 2 1 5 5 C 1.38260 * 120.15195 * 180.02562 * 4 3 2 6 6 C 1.38029 * 119.65865 * 359.66951 * 5 4 3 7 7 C 1.50701 * 119.71021 * 180.02562 * 6 5 4 8 8 C 1.39195 * 120.57860 * 359.97438 * 6 5 4 9 9 C 1.38758 * 120.27919 * 0.64504 * 8 6 5 10 10 N 1.39453 * 124.91897 * 178.93688 * 9 8 6 11 11 C 1.45620 * 116.53601 * 24.95308 * 10 9 8 12 12 H 1.08999 * 109.52882 * 57.60013 * 11 10 9 13 13 C 1.50694 * 109.53651 * 177.75885 * 11 10 9 14 14 H 1.08000 * 120.00563 * 120.00064 * 13 11 10 15 15 C 1.37885 * 119.99902 * 300.00227 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.53741 * 109.08975 * 297.64226 * 11 10 9 22 22 S 1.76631 * 118.26960 * 180.91571 * 8 6 5 23 23 H 1.09004 * 109.47499 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47203 * 299.99797 * 1 2 3 25 25 H 1.09004 * 109.47272 * 59.99909 * 1 2 3 26 26 H 1.08000 * 119.92163 * 0.04809 * 4 3 2 27 27 H 1.07993 * 120.16908 * 179.64413 * 5 4 3 28 28 H 1.08998 * 109.46800 * 269.97870 * 7 6 5 29 29 H 1.09007 * 109.46840 * 29.97785 * 7 6 5 30 30 H 1.08997 * 109.47158 * 149.97469 * 7 6 5 31 31 H 1.00900 * 111.00897 * 153.32841 * 10 9 8 32 32 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 33 33 H 1.08999 * 109.98926 * 190.02095 * 21 11 10 34 34 H 1.08999 * 109.98800 * 311.39074 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2860 2.3662 0.0005 5 6 1.9023 3.6038 0.0000 6 6 3.2804 3.6806 0.0059 7 6 3.9533 5.0290 0.0059 8 6 4.0541 2.5235 0.0128 9 6 3.4469 1.2758 0.0005 10 7 4.1258 0.0578 -0.0153 11 6 5.4759 0.0584 0.5304 12 1 5.4517 0.4090 1.5622 13 6 6.0380 -1.3391 0.4861 14 1 6.9362 -1.5422 -0.0780 15 6 5.4054 -2.3585 1.1657 16 7 4.3118 -2.1110 1.8530 17 14 6.1018 -4.0909 1.1101 18 1 5.2436 -4.9955 1.9168 19 1 6.1370 -4.5653 -0.2966 20 1 7.4786 -4.0890 1.6665 21 6 6.3582 0.9944 -0.3117 22 16 5.8120 2.6927 0.0449 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.2080 2.3011 0.0017 27 1 1.3084 4.5058 -0.0054 28 1 4.1204 5.3517 -1.0218 29 1 3.3168 5.7527 0.5151 30 1 4.9094 4.9579 0.5244 31 1 3.5679 -0.6727 0.4009 32 1 3.8666 -2.8283 2.3308 33 1 7.4044 0.8728 -0.0309 34 1 6.2278 0.7757 -1.3715 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214256102.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:29 Heat of formation + Delta-G solvation = -17.772526 kcal Electronic energy + Delta-G solvation = -18221.579573 eV Core-core repulsion = 15438.336474 eV Total energy + Delta-G solvation = -2783.243099 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.74369 -37.20606 -36.08012 -32.64404 -31.29094 -30.37153 -27.95949 -27.36670 -25.43408 -25.32353 -22.29577 -20.86316 -19.80793 -17.78640 -16.95638 -16.12751 -15.50661 -15.27316 -15.12709 -14.79600 -14.13569 -13.86540 -13.61190 -13.39426 -12.74882 -12.56959 -12.19452 -12.07121 -11.77124 -11.50433 -11.35957 -11.15629 -11.00332 -10.94496 -10.63637 -10.51130 -10.26741 -9.93423 -9.38457 -8.95124 -8.80018 -8.40920 -6.94961 -6.31394 -6.24517 -4.39946 1.81123 2.06633 2.39693 3.07611 3.21014 3.26089 3.29148 3.89219 4.21118 4.25161 4.81432 5.24711 5.26888 5.40005 5.44419 5.46429 5.71368 5.72456 5.81967 5.93219 5.96824 5.97944 6.07452 6.30368 6.33222 6.49703 6.60530 6.77750 7.04548 7.15474 7.21175 7.64651 7.73696 7.91433 8.42585 8.68364 8.74835 9.29494 10.77009 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019537 B = 0.008172 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.823428 B = 3425.308145 C = 4705.377159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.308 6.308 3 C 0.063 3.937 4 C -0.178 4.178 5 C -0.139 4.139 6 C -0.068 4.068 7 C -0.105 4.105 8 C -0.117 4.117 9 C 0.154 3.846 10 N -0.627 5.627 11 C 0.221 3.779 12 H 0.028 0.972 13 C -0.516 4.516 14 H 0.070 0.930 15 C 0.069 3.931 16 N -0.893 5.893 17 Si 0.908 3.092 18 H -0.285 1.285 19 H -0.273 1.273 20 H -0.274 1.274 21 C -0.087 4.087 22 S -0.162 6.162 23 H 0.093 0.907 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.402 0.598 32 H 0.271 0.729 33 H 0.104 0.896 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.324 7.841 -2.667 9.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.222 6.222 3 C 0.014 3.986 4 C -0.199 4.199 5 C -0.160 4.160 6 C -0.074 4.074 7 C -0.162 4.162 8 C -0.235 4.235 9 C 0.043 3.957 10 N -0.256 5.256 11 C 0.115 3.885 12 H 0.046 0.954 13 C -0.557 4.557 14 H 0.088 0.912 15 C -0.135 4.135 16 N -0.532 5.532 17 Si 0.735 3.265 18 H -0.210 1.210 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.235 4.235 22 S 0.080 5.920 23 H 0.111 0.889 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.239 0.761 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.262 8.440 -2.900 9.890 hybrid contribution -1.126 -1.972 0.431 2.312 sum -5.388 6.467 -2.469 8.772 Atomic orbital electron populations 1.22904 0.79587 1.03163 1.00430 1.86099 1.20142 1.26579 1.89331 1.18844 0.90907 0.84509 1.04365 1.20812 0.98968 0.92216 1.07938 1.20281 0.93092 0.96395 1.06246 1.19251 0.92982 0.93372 1.01822 1.20672 1.00326 0.93222 1.01999 1.20529 0.96017 0.93249 1.13669 1.18295 0.89009 0.90806 0.97638 1.55713 1.07531 1.04390 1.57990 1.19181 0.82609 0.95237 0.91523 0.95418 1.21031 1.11020 0.91812 1.31796 0.91210 1.25111 0.94719 0.99912 0.93751 1.69622 1.18273 1.33753 1.31509 0.86386 0.78946 0.82789 0.78371 1.21040 1.19878 1.19939 1.24168 1.03296 0.91828 1.04224 1.84834 0.98921 1.17800 1.90447 0.88860 0.93327 0.93403 0.86214 0.86460 0.91434 0.91985 0.91312 0.76126 0.91845 0.87762 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.80 101.05 0.99 1.48 16 2 O -0.31 -6.26 9.26 -19.77 -0.18 -6.44 16 3 C 0.06 1.32 6.67 -38.85 -0.26 1.06 16 4 C -0.18 -3.09 9.00 -39.57 -0.36 -3.44 16 5 C -0.14 -2.29 9.70 -39.65 -0.38 -2.67 16 6 C -0.07 -1.24 5.90 -104.34 -0.62 -1.85 16 7 C -0.11 -1.53 9.51 36.01 0.34 -1.19 16 8 C -0.12 -2.48 6.05 -39.03 -0.24 -2.72 16 9 C 0.15 3.56 6.32 -83.47 -0.53 3.03 16 10 N -0.63 -15.81 5.88 -53.23 -0.31 -16.12 16 11 C 0.22 5.57 2.33 -69.17 -0.16 5.41 16 12 H 0.03 0.78 8.05 -51.93 -0.42 0.36 16 13 C -0.52 -13.64 8.76 -34.44 -0.30 -13.94 16 14 H 0.07 1.77 7.75 -52.49 -0.41 1.37 16 15 C 0.07 1.82 5.28 -17.82 -0.09 1.72 16 16 N -0.89 -24.46 11.50 55.43 0.64 -23.82 16 17 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 C -0.09 -1.87 6.00 37.54 0.23 -1.64 16 22 S -0.16 -3.23 20.12 -107.50 -2.16 -5.40 16 23 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.05 0.62 7.64 -51.93 -0.40 0.22 16 25 H 0.05 0.59 7.64 -51.93 -0.40 0.19 16 26 H 0.12 1.70 6.22 -52.49 -0.33 1.37 16 27 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 30 H 0.07 1.05 6.59 -51.93 -0.34 0.70 16 31 H 0.40 10.82 5.23 -39.29 -0.21 10.62 16 32 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.10 2.07 8.12 -51.93 -0.42 1.64 16 34 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 LS Contribution 289.03 15.07 4.36 4.36 Total: -1.00 -28.61 289.03 -8.22 -36.83 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -4.16 Total: 9.95 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -1.38 Total: -14.75 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.32 Total: -39.95 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.18 Total: -6.44 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -2.16 Total: -5.40 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.61 -8.22 -36.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214256102.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.058 kcal (2) G-P(sol) polarization free energy of solvation -28.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds