Wall clock time and date at job start Mon Mar 30 2020 06:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36009 * 117.00281 * 2 1 4 4 C 1.38235 * 119.61942 * 0.02562 * 3 2 1 5 5 C 1.38260 * 120.15195 * 180.02562 * 4 3 2 6 6 C 1.38029 * 119.65865 * 359.66951 * 5 4 3 7 7 C 1.50701 * 119.71021 * 180.02562 * 6 5 4 8 8 C 1.39195 * 120.57860 * 359.97438 * 6 5 4 9 9 C 1.38758 * 120.27919 * 0.64504 * 8 6 5 10 10 N 1.39453 * 124.91897 * 178.93688 * 9 8 6 11 11 C 1.45620 * 116.53601 * 24.95308 * 10 9 8 12 12 H 1.08999 * 109.52882 * 57.60013 * 11 10 9 13 13 C 1.50694 * 109.53651 * 177.75885 * 11 10 9 14 14 H 1.08000 * 120.00563 * 120.00064 * 13 11 10 15 15 C 1.37885 * 119.99902 * 300.00227 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.53741 * 109.08975 * 297.64226 * 11 10 9 22 22 S 1.76631 * 118.26960 * 180.91571 * 8 6 5 23 23 H 1.09004 * 109.47499 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47203 * 299.99797 * 1 2 3 25 25 H 1.09004 * 109.47272 * 59.99909 * 1 2 3 26 26 H 1.08000 * 119.92163 * 0.04809 * 4 3 2 27 27 H 1.07993 * 120.16908 * 179.64413 * 5 4 3 28 28 H 1.08998 * 109.46800 * 269.97870 * 7 6 5 29 29 H 1.09007 * 109.46840 * 29.97785 * 7 6 5 30 30 H 1.08997 * 109.47158 * 149.97469 * 7 6 5 31 31 H 1.00900 * 111.00897 * 153.32841 * 10 9 8 32 32 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 33 33 H 1.08999 * 109.98926 * 190.02095 * 21 11 10 34 34 H 1.08999 * 109.98800 * 311.39074 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2860 2.3662 0.0005 5 6 1.9023 3.6038 0.0000 6 6 3.2804 3.6806 0.0059 7 6 3.9533 5.0290 0.0059 8 6 4.0541 2.5235 0.0128 9 6 3.4469 1.2758 0.0005 10 7 4.1258 0.0578 -0.0153 11 6 5.4759 0.0584 0.5304 12 1 5.4517 0.4090 1.5622 13 6 6.0380 -1.3391 0.4861 14 1 6.9362 -1.5422 -0.0780 15 6 5.4054 -2.3585 1.1657 16 7 4.3118 -2.1110 1.8530 17 14 6.1018 -4.0909 1.1101 18 1 5.2436 -4.9955 1.9168 19 1 6.1370 -4.5653 -0.2966 20 1 7.4786 -4.0890 1.6665 21 6 6.3582 0.9944 -0.3117 22 16 5.8120 2.6927 0.0449 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.2080 2.3011 0.0017 27 1 1.3084 4.5058 -0.0054 28 1 4.1204 5.3517 -1.0218 29 1 3.3168 5.7527 0.5151 30 1 4.9094 4.9579 0.5244 31 1 3.5679 -0.6727 0.4009 32 1 3.8666 -2.8283 2.3308 33 1 7.4044 0.8728 -0.0309 34 1 6.2278 0.7757 -1.3715 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214256102.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:29 Heat of formation + Delta-G solvation = -35.164498 kcal Electronic energy + Delta-G solvation = -18222.333745 eV Core-core repulsion = 15438.336474 eV Total energy + Delta-G solvation = -2783.997272 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.21101 -38.69157 -37.74371 -34.51429 -32.73189 -32.02731 -29.55293 -28.61180 -27.37909 -26.61527 -23.90071 -22.39526 -21.47917 -19.24492 -18.78751 -17.79756 -17.07884 -16.81313 -16.59418 -16.55709 -15.77564 -15.34068 -14.99480 -14.69775 -14.36237 -14.11582 -13.83527 -13.56426 -13.24720 -12.98853 -12.83028 -12.70060 -12.68401 -12.46282 -12.18901 -12.07481 -11.93587 -11.52028 -10.97106 -10.82947 -10.62085 -10.05477 -8.46955 -8.28524 -7.92173 -6.47468 0.33123 0.58642 0.81023 1.38925 1.42997 1.46245 1.52041 2.35675 2.55445 2.73558 2.94350 3.57064 4.00343 4.04510 4.12456 4.24896 4.31691 4.42282 4.46255 4.53045 4.57176 4.67904 4.72722 4.88720 4.90521 5.07928 5.17878 5.25578 5.38927 5.60462 5.65310 5.80102 5.89476 6.40235 6.56949 6.72451 6.94691 7.25636 8.77009 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019537 B = 0.008172 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.823428 B = 3425.308145 C = 4705.377159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.344 6.344 3 C 0.047 3.953 4 C -0.172 4.172 5 C -0.121 4.121 6 C -0.079 4.079 7 C -0.102 4.102 8 C -0.141 4.141 9 C 0.102 3.898 10 N -0.641 5.641 11 C 0.225 3.775 12 H -0.017 1.017 13 C -0.539 4.539 14 H 0.073 0.927 15 C 0.022 3.978 16 N -0.920 5.920 17 Si 0.975 3.025 18 H -0.282 1.282 19 H -0.270 1.270 20 H -0.266 1.266 21 C -0.087 4.087 22 S -0.134 6.134 23 H 0.107 0.893 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.157 0.843 27 H 0.164 0.836 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.387 0.613 32 H 0.271 0.729 33 H 0.116 0.884 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.638 9.497 -3.165 12.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.258 6.258 3 C -0.002 4.002 4 C -0.193 4.193 5 C -0.142 4.142 6 C -0.085 4.085 7 C -0.159 4.159 8 C -0.258 4.258 9 C -0.007 4.007 10 N -0.270 5.270 11 C 0.118 3.882 12 H 0.001 0.999 13 C -0.578 4.578 14 H 0.091 0.909 15 C -0.179 4.179 16 N -0.559 5.559 17 Si 0.799 3.201 18 H -0.207 1.207 19 H -0.195 1.195 20 H -0.191 1.191 21 C -0.235 4.235 22 S 0.108 5.892 23 H 0.125 0.875 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.174 0.826 27 H 0.181 0.819 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.220 0.780 32 H 0.080 0.920 33 H 0.134 0.866 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.585 10.144 -3.412 12.072 hybrid contribution -0.881 -2.337 0.614 2.572 sum -6.467 7.807 -2.798 10.517 Atomic orbital electron populations 1.23246 0.76748 1.04848 1.02109 1.86057 1.23235 1.27070 1.89471 1.19107 0.90552 0.85888 1.04689 1.21261 1.00666 0.91300 1.06039 1.20874 0.92766 0.97731 1.02853 1.19777 0.93930 0.93808 1.00958 1.20733 1.00075 0.91839 1.03218 1.20967 0.96750 0.93914 1.14132 1.18655 0.90593 0.90640 1.00816 1.55723 1.07047 1.05358 1.58919 1.18932 0.83991 0.95400 0.89928 0.99929 1.21383 1.11424 0.92922 1.32091 0.90868 1.25938 0.94924 1.03753 0.93290 1.69768 1.19331 1.34700 1.32115 0.85356 0.78455 0.77940 0.78383 1.20715 1.19495 1.19063 1.24014 1.03339 0.92935 1.03241 1.84548 0.98783 1.15351 1.90546 0.87461 0.91827 0.91238 0.82585 0.81876 0.89961 0.88811 0.92418 0.78020 0.91963 0.86608 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.80 113.37 1.11 1.78 16 2 O -0.34 -14.15 9.26 -93.65 -0.87 -15.01 16 3 C 0.05 1.95 6.67 22.74 0.15 2.10 16 4 C -0.17 -5.46 9.00 22.27 0.20 -5.26 16 5 C -0.12 -3.52 9.70 22.23 0.22 -3.30 16 6 C -0.08 -2.66 5.90 -19.68 -0.12 -2.78 16 7 C -0.10 -2.62 9.51 71.24 0.68 -1.94 16 8 C -0.14 -5.96 6.05 22.62 0.14 -5.83 16 9 C 0.10 4.85 6.32 38.53 0.24 5.09 16 10 N -0.64 -34.07 5.88 -322.32 -1.89 -35.97 16 11 C 0.22 11.94 2.33 44.66 0.10 12.05 16 12 H -0.02 -1.01 8.05 -2.39 -0.02 -1.02 16 13 C -0.54 -29.62 8.76 25.60 0.22 -29.40 16 14 H 0.07 3.84 7.75 -2.91 -0.02 3.82 16 15 C 0.02 1.18 5.28 84.66 0.45 1.63 16 16 N -0.92 -52.52 11.50 21.45 0.25 -52.28 16 17 Si 0.97 42.76 29.54 68.60 2.03 44.78 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 C -0.09 -3.88 6.00 72.23 0.43 -3.44 16 22 S -0.13 -5.40 20.12 -56.49 -1.14 -6.53 16 23 H 0.11 2.50 8.14 -2.38 -0.02 2.48 16 24 H 0.06 1.48 7.64 -2.38 -0.02 1.46 16 25 H 0.07 1.53 7.64 -2.38 -0.02 1.51 16 26 H 0.16 3.73 6.22 -2.91 -0.02 3.71 16 27 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.09 1.82 8.08 -2.38 -0.02 1.81 16 30 H 0.06 1.62 6.59 -2.39 -0.02 1.60 16 31 H 0.39 22.06 5.23 -89.69 -0.47 21.59 16 32 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 33 H 0.12 4.74 8.12 -2.39 -0.02 4.72 16 34 H 0.08 3.65 8.14 -2.39 -0.02 3.63 16 Total: -1.00 -65.66 289.03 2.85 -62.80 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.65 Total: 31.51 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 3.83 Total: -29.30 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -1.65 Total: -88.24 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.87 Total: -15.01 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: -5.40 SS G_CDS: -1.14 Total: -6.53 kcal Total: -65.66 2.85 -62.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214256102.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.638 kcal (2) G-P(sol) polarization free energy of solvation -65.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds