Wall clock time and date at job start Mon Mar 30 2020 06:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36017 * 117.00154 * 2 1 4 4 C 1.38247 * 119.61875 * 359.72367 * 3 2 1 5 5 C 1.38255 * 120.13972 * 179.43222 * 4 3 2 6 6 C 1.38029 * 119.66843 * 0.81628 * 5 4 3 7 7 C 1.50707 * 119.71140 * 179.91252 * 6 5 4 8 8 C 1.39196 * 120.57591 * 359.93460 * 6 5 4 9 9 C 1.38757 * 120.27011 * 359.33076 * 8 6 5 10 10 N 1.39458 * 124.88276 * 181.56014 * 9 8 6 11 11 C 1.45626 * 116.47856 * 334.43827 * 10 9 8 12 12 H 1.08999 * 109.53684 * 302.73363 * 11 10 9 13 13 C 1.50694 * 109.53937 * 182.48401 * 11 10 9 14 14 H 1.08001 * 120.00452 * 240.00257 * 13 11 10 15 15 C 1.37873 * 120.00011 * 59.99931 * 13 11 10 16 16 N 1.31510 * 120.00109 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00050 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47006 * 60.00424 * 17 15 13 19 19 H 1.48506 * 109.47229 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47178 * 299.99975 * 17 15 13 21 21 C 1.53744 * 109.06909 * 62.60768 * 11 10 9 22 22 S 1.76626 * 118.27467 * 178.96355 * 8 6 5 23 23 H 1.09002 * 109.47382 * 300.00360 * 1 2 3 24 24 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46926 * 60.00467 * 1 2 3 26 26 H 1.08000 * 119.92666 * 359.66095 * 4 3 2 27 27 H 1.08007 * 120.16526 * 180.55239 * 5 4 3 28 28 H 1.08999 * 109.47259 * 270.02658 * 7 6 5 29 29 H 1.09002 * 109.47086 * 30.02416 * 7 6 5 30 30 H 1.08998 * 109.46714 * 150.02288 * 7 6 5 31 31 H 1.00895 * 111.00672 * 206.11611 * 10 9 8 32 32 H 0.97002 * 120.00335 * 180.02562 * 16 15 13 33 33 H 1.08994 * 109.98613 * 48.67687 * 21 11 10 34 34 H 1.09004 * 109.98138 * 170.03362 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2119 0.0000 4 6 1.2860 2.3663 -0.0058 5 6 1.9023 3.6038 0.0060 6 6 3.2805 3.6807 0.0065 7 6 3.9534 5.0291 0.0173 8 6 4.0542 2.5236 -0.0034 9 6 3.4468 1.2760 0.0001 10 7 4.1262 0.0583 0.0221 11 6 5.4775 0.0588 -0.5206 12 1 5.4561 0.4114 -1.5517 13 6 6.0392 -1.3389 -0.4757 14 1 6.9361 -1.5425 0.0904 15 6 5.4080 -2.3577 -1.1572 16 7 4.3160 -2.1097 -1.8469 17 14 6.1046 -4.0901 -1.1021 18 1 6.1376 -4.5659 0.3043 19 1 5.2479 -4.9941 -1.9110 20 1 7.4823 -4.0875 -1.6563 21 6 6.3578 0.9940 0.3244 22 16 5.8121 2.6928 -0.0303 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 0.2080 2.3013 -0.0158 27 1 1.3084 4.5059 0.0105 28 1 4.1151 5.3628 -1.0077 29 1 3.3195 5.7474 0.5374 30 1 4.9121 4.9526 0.5301 31 1 3.5699 -0.6738 -0.3934 32 1 3.8717 -2.8266 -2.3261 33 1 6.2256 0.7739 1.3837 34 1 7.4046 0.8731 0.0455 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214256159.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:30 Heat of formation + Delta-G solvation = -35.321352 kcal Electronic energy + Delta-G solvation = -18222.077916 eV Core-core repulsion = 15438.073843 eV Total energy + Delta-G solvation = -2784.004073 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.20893 -38.69007 -37.74286 -34.51444 -32.73025 -32.02599 -29.55013 -28.61135 -27.38028 -26.61328 -23.89685 -22.39768 -21.47810 -19.24532 -18.78842 -17.79157 -17.07636 -16.81668 -16.59858 -16.55272 -15.77882 -15.34330 -14.97299 -14.66700 -14.37275 -14.13403 -13.85087 -13.54380 -13.28332 -12.97280 -12.82388 -12.69478 -12.68251 -12.47696 -12.18680 -12.07385 -11.92753 -11.51306 -10.96916 -10.84127 -10.63505 -10.02606 -8.47725 -8.28890 -7.91914 -6.47513 0.33949 0.57881 0.81455 1.38943 1.42996 1.46354 1.52052 2.35685 2.55527 2.73678 2.94177 3.56911 4.00492 4.04921 4.12598 4.24898 4.32058 4.42290 4.46296 4.53255 4.57334 4.68336 4.73051 4.88079 4.90862 5.08152 5.17979 5.26294 5.39020 5.60556 5.65608 5.79967 5.89632 6.40187 6.56962 6.72356 6.94531 7.25647 8.77021 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019540 B = 0.008172 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.619348 B = 3425.578100 C = 4706.147419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.344 6.344 3 C 0.047 3.953 4 C -0.172 4.172 5 C -0.121 4.121 6 C -0.079 4.079 7 C -0.105 4.105 8 C -0.141 4.141 9 C 0.102 3.898 10 N -0.641 5.641 11 C 0.225 3.775 12 H -0.017 1.017 13 C -0.539 4.539 14 H 0.073 0.927 15 C 0.022 3.978 16 N -0.920 5.920 17 Si 0.974 3.026 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.266 1.266 21 C -0.087 4.087 22 S -0.132 6.132 23 H 0.069 0.931 24 H 0.107 0.893 25 H 0.063 0.937 26 H 0.157 0.843 27 H 0.164 0.836 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.386 0.614 32 H 0.271 0.729 33 H 0.081 0.919 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.596 9.469 3.153 11.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.258 6.258 3 C -0.002 4.002 4 C -0.193 4.193 5 C -0.142 4.142 6 C -0.085 4.085 7 C -0.162 4.162 8 C -0.258 4.258 9 C -0.007 4.007 10 N -0.270 5.270 11 C 0.117 3.883 12 H 0.001 0.999 13 C -0.578 4.578 14 H 0.091 0.909 15 C -0.179 4.179 16 N -0.559 5.559 17 Si 0.798 3.202 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.236 4.236 22 S 0.110 5.890 23 H 0.088 0.912 24 H 0.125 0.875 25 H 0.082 0.918 26 H 0.174 0.826 27 H 0.181 0.819 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.220 0.780 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.541 10.117 3.406 12.027 hybrid contribution -0.893 -2.334 -0.635 2.579 sum -6.434 7.783 2.771 10.471 Atomic orbital electron populations 1.23245 0.76753 1.04844 1.02105 1.86059 1.23230 1.27067 1.89480 1.19105 0.90559 0.85881 1.04704 1.21263 1.00662 0.91303 1.06029 1.20874 0.92778 0.97721 1.02860 1.19772 0.93918 0.93827 1.00947 1.20769 1.00612 0.91852 1.02974 1.20969 0.96755 0.93906 1.14170 1.18658 0.90607 0.90663 1.00797 1.55768 1.07009 1.05286 1.58931 1.18934 0.83981 0.95390 0.89947 0.99916 1.21379 1.11551 0.92918 1.31967 0.90860 1.25932 0.94919 1.03748 0.93292 1.69765 1.19438 1.34717 1.32000 0.85359 0.78461 0.77949 0.78381 1.19491 1.20720 1.19060 1.24013 1.03365 0.92939 1.03253 1.84551 0.98764 1.15283 1.90416 0.91246 0.87461 0.91829 0.82592 0.81901 0.90602 0.88659 0.91719 0.78041 0.91961 0.90030 0.86585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.80 113.37 1.11 1.78 16 2 O -0.34 -14.15 9.27 -93.74 -0.87 -15.02 16 3 C 0.05 1.95 6.67 22.74 0.15 2.10 16 4 C -0.17 -5.47 9.00 22.28 0.20 -5.27 16 5 C -0.12 -3.53 9.69 22.22 0.22 -3.32 16 6 C -0.08 -2.66 5.90 -19.68 -0.12 -2.77 16 7 C -0.11 -2.71 9.48 71.24 0.68 -2.03 16 8 C -0.14 -5.98 6.05 22.62 0.14 -5.84 16 9 C 0.10 4.84 6.32 38.52 0.24 5.08 16 10 N -0.64 -34.03 5.88 -322.31 -1.90 -35.93 16 11 C 0.22 11.93 2.33 44.66 0.10 12.04 16 12 H -0.02 -1.00 8.05 -2.39 -0.02 -1.02 16 13 C -0.54 -29.59 8.76 25.60 0.22 -29.37 16 14 H 0.07 3.84 7.75 -2.91 -0.02 3.82 16 15 C 0.02 1.19 5.28 84.65 0.45 1.63 16 16 N -0.92 -52.50 11.50 21.45 0.25 -52.26 16 17 Si 0.97 42.73 29.54 68.60 2.03 44.75 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 C -0.09 -3.89 6.00 72.23 0.43 -3.45 16 22 S -0.13 -5.31 20.14 -56.49 -1.14 -6.45 16 23 H 0.07 1.53 7.65 -2.39 -0.02 1.51 16 24 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 25 H 0.06 1.48 7.62 -2.38 -0.02 1.46 16 26 H 0.16 3.74 6.22 -2.91 -0.02 3.72 16 27 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 28 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.09 1.83 8.08 -2.39 -0.02 1.81 16 30 H 0.06 1.78 6.64 -2.39 -0.02 1.76 16 31 H 0.39 22.04 5.23 -89.70 -0.47 21.57 16 32 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.08 3.64 8.14 -2.39 -0.02 3.62 16 34 H 0.12 4.74 8.13 -2.38 -0.02 4.72 16 Total: -1.00 -65.55 289.08 2.85 -62.70 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.65 Total: 31.62 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: 3.83 Total: -29.42 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: -1.65 Total: -88.18 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.87 Total: -15.02 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -1.14 Total: -6.45 kcal Total: -65.55 2.85 -62.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214256159.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.382 kcal (2) G-P(sol) polarization free energy of solvation -65.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds