Wall clock time and date at job start Mon Mar 30 2020 06:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46668 * 2 1 4 4 C 1.50691 * 109.47172 * 239.99357 * 2 1 3 5 5 H 1.08001 * 119.99744 * 240.00091 * 4 2 1 6 6 C 1.37881 * 120.00168 * 59.72996 * 4 2 1 7 7 N 1.31514 * 119.99648 * 0.27006 * 6 4 2 8 8 Si 1.86795 * 120.00005 * 180.27263 * 6 4 2 9 9 H 1.48500 * 109.47183 * 89.99570 * 8 6 4 10 10 H 1.48498 * 109.47272 * 209.99713 * 8 6 4 11 11 H 1.48504 * 109.47416 * 329.99744 * 8 6 4 12 12 N 1.46496 * 109.46851 * 119.99121 * 2 1 3 13 13 C 1.46509 * 119.99753 * 66.16457 * 12 2 1 14 14 C 1.39027 * 120.00446 * 246.16392 * 12 2 1 15 15 C 1.38989 * 119.62825 * 12.72440 * 14 12 2 16 16 C 1.39656 * 118.95234 * 179.80012 * 15 14 12 17 17 C 1.43195 * 120.88322 * 180.23784 * 16 15 14 18 18 N 5.95671 * 108.64411 * 34.16235 * 2 1 3 19 19 C 1.40071 * 118.23528 * 0.46340 * 16 15 14 20 20 C 1.38049 * 119.15146 * 359.75336 * 19 16 15 21 21 Cl 1.73603 * 119.51559 * 180.02562 * 20 19 16 22 22 N 1.32044 * 120.97486 * 0.02562 * 20 19 16 23 23 H 1.09004 * 109.47421 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47490 * 300.01051 * 1 2 3 25 25 H 1.09010 * 109.46892 * 60.00475 * 1 2 3 26 26 H 0.96999 * 119.99340 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.46766 * 90.00035 * 13 12 2 28 28 H 1.08999 * 109.46643 * 209.99857 * 13 12 2 29 29 H 1.09000 * 109.46984 * 329.99614 * 13 12 2 30 30 H 1.07996 * 120.52516 * 0.02562 * 15 14 12 31 31 H 1.08002 * 120.42531 * 179.73274 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6947 -0.2429 -2.4827 7 7 0.9386 0.8264 -2.6034 8 14 2.3111 -1.1281 -4.0077 9 1 1.3310 -2.1705 -4.4051 10 1 2.4722 -0.1522 -5.1153 11 1 3.6201 -1.7654 -3.7151 12 7 2.0182 -0.6904 1.1963 13 6 1.7789 -2.1263 1.3623 14 6 2.7087 0.0168 2.1740 15 6 2.7048 1.4064 2.1486 16 6 3.3995 2.1027 3.1401 17 6 3.4189 3.5344 3.1565 18 7 3.4343 4.6702 3.1694 19 6 4.0809 1.3632 4.1153 20 6 4.0379 -0.0157 4.0657 21 17 4.8785 -0.9414 5.2699 22 7 3.3670 -0.6409 3.1157 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7007 1.1551 -3.4845 27 1 2.6059 -2.6854 0.9245 28 1 1.7029 -2.3615 2.4238 29 1 0.8500 -2.4000 0.8620 30 1 2.1700 1.9395 1.3765 31 1 4.6331 1.8655 4.8959 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215550006.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:39 Heat of formation + Delta-G solvation = 70.467858 kcal Electronic energy + Delta-G solvation = -17209.200379 eV Core-core repulsion = 14324.199620 eV Total energy + Delta-G solvation = -2885.000759 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.22327 -37.09092 -36.76692 -35.99343 -33.26322 -32.39795 -30.35172 -29.19932 -26.13287 -25.40031 -23.93178 -23.11625 -20.41456 -18.55224 -16.99785 -16.28208 -15.99173 -15.55541 -14.91382 -14.84997 -14.63459 -13.64869 -13.60211 -13.10739 -13.04431 -12.96201 -12.57113 -11.94141 -11.70931 -11.59063 -11.41675 -11.23883 -11.13450 -10.97806 -10.78196 -10.45008 -10.26604 -9.84358 -9.51825 -9.36289 -9.08468 -8.61902 -7.03842 -6.25867 -4.35602 0.79075 1.33371 1.84184 2.63909 3.10603 3.17462 3.25435 3.28095 3.60028 3.81719 4.01668 4.26152 5.02961 5.08212 5.11125 5.12179 5.46745 5.71484 5.90768 6.14643 6.16610 6.37545 6.41392 6.54688 6.67284 6.79995 7.10328 7.33420 7.42784 7.54332 7.76590 7.88357 8.18475 8.28863 8.70838 9.32525 10.78071 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.019534 B = 0.005815 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.087354 B = 4813.863214 C = 5627.556573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.265 3.735 3 H 0.053 0.947 4 C -0.530 4.530 5 H 0.064 0.936 6 C 0.067 3.933 7 N -0.888 5.888 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.571 5.571 13 C 0.108 3.892 14 C 0.437 3.563 15 C -0.183 4.183 16 C 0.067 3.933 17 C 0.265 3.735 18 N -0.408 5.408 19 C -0.203 4.203 20 C 0.235 3.765 21 Cl -0.040 7.040 22 N -0.536 5.536 23 H 0.035 0.965 24 H 0.015 0.985 25 H 0.097 0.903 26 H 0.266 0.734 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.155 0.845 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.019 -2.221 10.711 11.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.165 3.835 3 H 0.071 0.929 4 C -0.569 4.569 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.278 5.278 13 C -0.035 4.035 14 C 0.198 3.802 15 C -0.212 4.212 16 C 0.056 3.944 17 C -0.051 4.051 18 N -0.083 5.083 19 C -0.230 4.230 20 C 0.069 3.931 21 Cl -0.011 7.011 22 N -0.258 5.258 23 H 0.054 0.946 24 H 0.034 0.966 25 H 0.115 0.885 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.172 0.828 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.859 -1.466 10.450 10.933 hybrid contribution 0.413 -0.215 -0.835 0.956 sum 3.272 -1.681 9.616 10.296 Atomic orbital electron populations 1.22168 0.97697 1.00130 1.01109 1.19151 0.91396 0.93342 0.79635 0.92935 1.21289 1.32212 1.13608 0.89765 0.91745 1.24881 0.94682 0.94928 0.99086 1.69846 1.35959 1.22537 1.24207 0.86435 0.79329 0.79363 0.82004 1.20444 1.21027 1.19783 1.47446 1.53276 1.08642 1.18391 1.21392 1.01014 0.80610 1.00497 1.18003 0.87916 0.87412 0.86875 1.21751 1.04632 0.93673 1.01105 1.15657 0.98279 0.84488 0.95963 1.25362 0.93817 0.92251 0.93634 1.81226 1.07708 1.11768 1.07629 1.21137 1.07177 0.92054 1.02683 1.20809 0.93967 0.87720 0.90647 1.98388 1.75041 1.75350 1.52331 1.66349 1.12844 1.41069 1.05497 0.94625 0.96604 0.88496 0.92410 0.93448 0.92293 0.91236 0.82775 0.83943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.04 37.16 0.34 -2.89 16 2 C 0.26 5.81 2.45 -69.09 -0.17 5.64 16 3 H 0.05 1.22 5.59 -51.93 -0.29 0.93 16 4 C -0.53 -13.00 8.30 -34.44 -0.29 -13.29 16 5 H 0.06 1.60 7.31 -52.49 -0.38 1.22 16 6 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -22.89 11.31 55.43 0.63 -22.26 16 8 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 N -0.57 -11.04 2.87 -175.45 -0.50 -11.55 16 13 C 0.11 1.87 9.36 59.85 0.56 2.43 16 14 C 0.44 7.82 7.30 -155.06 -1.13 6.69 16 15 C -0.18 -3.01 8.96 -38.77 -0.35 -3.36 16 16 C 0.07 0.96 5.75 -106.76 -0.61 0.35 16 17 C 0.27 3.90 15.40 -22.47 -0.35 3.55 16 18 N -0.41 -6.58 18.54 41.84 0.78 -5.80 16 19 C -0.20 -2.65 9.61 -38.96 -0.37 -3.03 16 20 C 0.23 3.41 7.26 -17.53 -0.13 3.28 16 21 Cl -0.04 -0.49 29.10 -51.86 -1.51 -2.00 16 22 N -0.54 -9.06 9.25 -9.62 -0.09 -9.15 16 23 H 0.03 0.72 6.92 -51.93 -0.36 0.36 16 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.10 2.28 6.06 -51.92 -0.31 1.96 16 26 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 27 H 0.05 0.83 7.99 -51.93 -0.42 0.42 16 28 H 0.06 0.93 7.61 -51.93 -0.40 0.53 16 29 H 0.07 1.18 6.77 -51.93 -0.35 0.83 16 30 H 0.15 2.62 6.05 -52.49 -0.32 2.31 16 31 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 289.47 15.07 4.36 4.36 Total: -1.00 -25.30 289.47 -6.76 -32.06 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -2.81 Total: -1.43 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -2.59 Total: 0.97 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.81 Total: -48.76 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.51 Total: -2.00 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -25.30 -6.76 -32.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215550006.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.530 kcal (2) G-P(sol) polarization free energy of solvation -25.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds