Wall clock time and date at job start Mon Mar 30 2020 06:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46668 * 2 1 4 4 C 1.50691 * 109.47172 * 239.99357 * 2 1 3 5 5 H 1.08001 * 119.99744 * 240.00091 * 4 2 1 6 6 C 1.37881 * 120.00168 * 59.72996 * 4 2 1 7 7 N 1.31514 * 119.99648 * 0.27006 * 6 4 2 8 8 Si 1.86795 * 120.00005 * 180.27263 * 6 4 2 9 9 H 1.48500 * 109.47183 * 89.99570 * 8 6 4 10 10 H 1.48498 * 109.47272 * 209.99713 * 8 6 4 11 11 H 1.48504 * 109.47416 * 329.99744 * 8 6 4 12 12 N 1.46496 * 109.46851 * 119.99121 * 2 1 3 13 13 C 1.46509 * 119.99753 * 66.16457 * 12 2 1 14 14 C 1.39027 * 120.00446 * 246.16392 * 12 2 1 15 15 C 1.38989 * 119.62825 * 12.72440 * 14 12 2 16 16 C 1.39656 * 118.95234 * 179.80012 * 15 14 12 17 17 C 1.43195 * 120.88322 * 180.23784 * 16 15 14 18 18 N 5.95671 * 108.64411 * 34.16235 * 2 1 3 19 19 C 1.40071 * 118.23528 * 0.46340 * 16 15 14 20 20 C 1.38049 * 119.15146 * 359.75336 * 19 16 15 21 21 Cl 1.73603 * 119.51559 * 180.02562 * 20 19 16 22 22 N 1.32044 * 120.97486 * 0.02562 * 20 19 16 23 23 H 1.09004 * 109.47421 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47490 * 300.01051 * 1 2 3 25 25 H 1.09010 * 109.46892 * 60.00475 * 1 2 3 26 26 H 0.96999 * 119.99340 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.46766 * 90.00035 * 13 12 2 28 28 H 1.08999 * 109.46643 * 209.99857 * 13 12 2 29 29 H 1.09000 * 109.46984 * 329.99614 * 13 12 2 30 30 H 1.07996 * 120.52516 * 0.02562 * 15 14 12 31 31 H 1.08002 * 120.42531 * 179.73274 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6947 -0.2429 -2.4827 7 7 0.9386 0.8264 -2.6034 8 14 2.3111 -1.1281 -4.0077 9 1 1.3310 -2.1705 -4.4051 10 1 2.4722 -0.1522 -5.1153 11 1 3.6201 -1.7654 -3.7151 12 7 2.0182 -0.6904 1.1963 13 6 1.7789 -2.1263 1.3623 14 6 2.7087 0.0168 2.1740 15 6 2.7048 1.4064 2.1486 16 6 3.3995 2.1027 3.1401 17 6 3.4189 3.5344 3.1565 18 7 3.4343 4.6702 3.1694 19 6 4.0809 1.3632 4.1153 20 6 4.0379 -0.0157 4.0657 21 17 4.8785 -0.9414 5.2699 22 7 3.3670 -0.6409 3.1157 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7007 1.1551 -3.4845 27 1 2.6059 -2.6854 0.9245 28 1 1.7029 -2.3615 2.4238 29 1 0.8500 -2.4000 0.8620 30 1 2.1700 1.9395 1.3765 31 1 4.6331 1.8655 4.8959 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215550006.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:39 Heat of formation + Delta-G solvation = 58.849698 kcal Electronic energy + Delta-G solvation = -17209.704181 eV Core-core repulsion = 14324.199620 eV Total energy + Delta-G solvation = -2885.504560 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.50089 -38.47826 -37.94091 -37.26599 -34.93686 -33.75384 -31.78335 -30.72021 -27.47352 -27.26158 -25.21210 -24.50578 -21.95452 -19.88611 -18.55652 -17.81403 -17.41865 -16.89957 -16.36784 -16.13081 -16.06330 -15.14719 -14.98305 -14.50293 -14.37428 -14.24357 -14.00284 -13.43596 -13.17996 -13.03104 -12.91551 -12.73665 -12.62016 -12.41265 -12.25607 -12.17432 -12.01284 -11.24389 -10.95172 -10.73687 -10.53017 -10.42236 -8.48223 -8.10641 -6.29542 -0.44421 0.12163 0.70609 1.41866 1.42804 1.46142 1.53887 1.87775 2.20860 2.45383 2.57942 2.77741 3.13664 3.79052 3.88329 3.93972 4.23023 4.47145 4.56477 4.75501 4.81333 4.96512 5.00172 5.07296 5.10656 5.18352 5.43166 5.65817 5.81200 6.05215 6.18657 6.22598 6.66257 6.73526 6.99837 7.41974 8.87549 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.019534 B = 0.005815 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.087354 B = 4813.863214 C = 5627.556573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.272 3.728 3 H 0.037 0.963 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.026 3.974 7 N -0.910 5.910 8 Si 0.954 3.046 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.588 5.588 13 C 0.115 3.885 14 C 0.422 3.578 15 C -0.194 4.194 16 C 0.077 3.923 17 C 0.283 3.717 18 N -0.429 5.429 19 C -0.176 4.176 20 C 0.225 3.775 21 Cl -0.015 7.015 22 N -0.544 5.544 23 H 0.037 0.963 24 H 0.030 0.970 25 H 0.072 0.928 26 H 0.265 0.735 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.143 0.857 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.975 -2.500 12.148 13.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.171 3.829 3 H 0.054 0.946 4 C -0.577 4.577 5 H 0.074 0.926 6 C -0.175 4.175 7 N -0.549 5.549 8 Si 0.780 3.220 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.296 5.296 13 C -0.028 4.028 14 C 0.185 3.815 15 C -0.223 4.223 16 C 0.065 3.935 17 C -0.033 4.033 18 N -0.104 5.104 19 C -0.202 4.202 20 C 0.059 3.941 21 Cl 0.013 6.987 22 N -0.266 5.266 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.160 0.840 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.835 -1.748 11.926 12.649 hybrid contribution 0.217 -0.112 -1.112 1.139 sum 4.052 -1.860 10.814 11.697 Atomic orbital electron populations 1.21977 0.97322 1.00049 1.00544 1.18811 0.91588 0.92434 0.80097 0.94567 1.21542 1.31809 1.13321 0.91074 0.92607 1.25512 0.95004 0.95571 1.01369 1.69951 1.36898 1.23547 1.24514 0.85612 0.78731 0.78403 0.79229 1.19924 1.21077 1.19924 1.47191 1.54855 1.09154 1.18391 1.21363 1.00516 0.79689 1.01248 1.18024 0.88561 0.87719 0.87245 1.21650 1.05532 0.93388 1.01710 1.15587 0.97953 0.84217 0.95697 1.25227 0.93112 0.91987 0.92924 1.81256 1.08438 1.12378 1.08357 1.21491 1.05128 0.91515 1.02098 1.21126 0.93776 0.88607 0.90607 1.98401 1.74311 1.74943 1.51028 1.66333 1.12822 1.41700 1.05706 0.94382 0.95105 0.90951 0.92533 0.94304 0.90879 0.91426 0.83968 0.80482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.99 9.04 71.98 0.65 -5.34 16 2 C 0.27 12.12 2.45 44.24 0.11 12.23 16 3 H 0.04 1.74 5.59 -2.39 -0.01 1.72 16 4 C -0.54 -26.75 8.30 25.60 0.21 -26.53 16 5 H 0.06 2.81 7.31 -2.91 -0.02 2.78 16 6 C 0.03 1.31 5.30 84.66 0.45 1.76 16 7 N -0.91 -47.65 11.31 21.45 0.24 -47.41 16 8 Si 0.95 40.79 29.54 68.60 2.03 42.82 16 9 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 10 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 12 N -0.59 -22.70 2.87 -709.01 -2.04 -24.74 16 13 C 0.11 3.93 9.36 127.77 1.20 5.12 16 14 C 0.42 14.80 7.30 133.02 0.97 15.78 16 15 C -0.19 -6.28 8.96 22.79 0.20 -6.08 16 16 C 0.08 2.05 5.75 -21.25 -0.12 1.92 16 17 C 0.28 7.80 15.40 88.33 1.36 9.16 16 18 N -0.43 -13.17 18.54 19.00 0.35 -12.82 16 19 C -0.18 -4.02 9.61 22.67 0.22 -3.80 16 20 C 0.22 5.92 7.26 84.62 0.61 6.54 16 21 Cl -0.02 -0.34 29.10 -2.72 -0.08 -0.42 16 22 N -0.54 -17.51 9.25 -184.34 -1.71 -19.21 16 23 H 0.04 1.55 6.92 -2.38 -0.02 1.54 16 24 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.07 3.47 6.06 -2.38 -0.01 3.45 16 26 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 27 H 0.04 1.36 7.99 -2.39 -0.02 1.34 16 28 H 0.07 2.24 7.61 -2.39 -0.02 2.22 16 29 H 0.07 2.28 6.77 -2.39 -0.02 2.27 16 30 H 0.14 4.94 6.05 -2.91 -0.02 4.92 16 31 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -53.13 289.47 5.83 -47.30 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.17 Total: 3.73 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 5.86 Total: 10.76 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -3.15 Total: -104.18 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.08 Total: -0.42 kcal Total: -53.13 5.83 -47.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215550006.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.147 kcal (2) G-P(sol) polarization free energy of solvation -53.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds