Wall clock time and date at job start Mon Mar 30 2020 06:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21281 * 119.99954 * 2 1 4 4 N 1.34776 * 119.99882 * 180.02562 * 2 1 3 5 5 C 1.46479 * 124.88016 * 354.92024 * 4 2 1 6 6 C 1.53734 * 105.28028 * 180.02562 * 5 4 2 7 7 C 1.51279 * 104.49703 * 359.79524 * 6 5 4 8 8 C 1.36430 * 130.78464 * 179.59125 * 7 6 5 9 9 C 1.40804 * 119.95820 * 180.32810 * 8 7 6 10 10 C 1.41108 * 120.34976 * 180.27147 * 9 8 7 11 11 H 1.07994 * 120.00561 * 209.63102 * 10 9 8 12 12 C 1.39902 * 119.99482 * 29.62966 * 10 9 8 13 13 N 1.30884 * 120.00129 * 9.96764 * 12 10 9 14 14 Si 1.86805 * 119.99798 * 189.96700 * 12 10 9 15 15 H 1.48492 * 109.46941 * 60.00108 * 14 12 10 16 16 H 1.48505 * 109.47108 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47210 * 300.00089 * 14 12 10 18 18 C 1.41026 * 119.30704 * 0.25081 * 9 8 7 19 19 Cl 1.73589 * 120.02507 * 179.97438 * 18 9 8 20 20 C 1.36220 * 119.94458 * 0.02562 * 18 9 8 21 21 C 1.39228 * 124.88116 * 174.95107 * 4 2 1 22 22 H 1.09002 * 109.46792 * 274.74500 * 1 2 3 23 23 H 1.09001 * 109.46662 * 34.74313 * 1 2 3 24 24 H 1.08990 * 109.47060 * 154.74293 * 1 2 3 25 25 H 1.09001 * 110.28402 * 298.97604 * 5 4 2 26 26 H 1.08998 * 110.28093 * 61.07511 * 5 4 2 27 27 H 1.08995 * 110.42863 * 118.75306 * 6 5 4 28 28 H 1.08998 * 110.42737 * 241.12956 * 6 5 4 29 29 H 1.08001 * 120.02405 * 0.59969 * 8 7 6 30 30 H 0.97009 * 119.99882 * 184.99122 * 13 12 10 31 31 H 1.08002 * 119.69258 * 180.02562 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5632 -2.4911 0.1053 6 6 2.7322 -3.4885 0.0598 7 6 3.9644 -2.6217 -0.0781 8 6 5.2846 -2.9560 -0.1592 9 6 6.2594 -1.9469 -0.2783 10 6 7.6267 -2.2836 -0.3685 11 1 8.3763 -1.6036 0.0082 12 6 8.0113 -3.4984 -0.9461 13 7 7.1290 -4.2321 -1.5757 14 14 9.7841 -4.0733 -0.8188 15 1 10.1544 -4.2229 0.6114 16 1 9.9313 -5.3804 -1.5081 17 1 10.6760 -3.0734 -1.4591 18 6 5.8548 -0.5963 -0.3070 19 17 7.0409 0.6628 -0.4527 20 6 4.5326 -0.2805 -0.2192 21 6 3.5643 -1.2879 -0.1011 22 1 -0.3633 0.0850 1.0242 23 1 -0.3633 0.8445 -0.5857 24 1 -0.3633 -0.9293 -0.4384 25 1 1.0249 -2.5827 1.0487 26 1 0.8885 -2.6614 -0.7337 27 1 2.7729 -4.0692 0.9813 28 1 2.6352 -4.1494 -0.8015 29 1 5.5816 -3.9941 -0.1364 30 1 7.3777 -5.1069 -1.9131 31 1 4.2273 0.7553 -0.2420 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216945707.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:44 Heat of formation + Delta-G solvation = -23.445891 kcal Electronic energy + Delta-G solvation = -17563.766214 eV Core-core repulsion = 14642.400298 eV Total energy + Delta-G solvation = -2921.365916 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.24188 -37.83212 -36.09526 -34.81760 -33.34762 -31.53891 -30.26072 -28.66579 -27.94880 -25.16288 -22.80988 -21.91090 -20.10836 -18.89867 -17.27698 -16.56616 -15.87554 -15.83998 -15.15335 -14.16351 -13.99083 -13.91254 -13.52510 -12.65421 -12.51063 -12.29675 -12.13625 -12.09894 -11.97813 -11.71693 -11.50155 -11.22277 -11.16800 -10.68831 -10.47055 -10.27806 -9.87607 -9.59570 -9.43234 -9.13503 -8.77197 -7.48864 -6.98601 -6.76191 -4.40463 2.33516 2.72060 2.98382 3.04070 3.08133 3.31453 3.33328 3.75970 3.89531 4.47738 4.79042 5.04617 5.15819 5.24753 5.40087 5.42046 5.57491 5.68974 5.90392 6.09666 6.25795 6.35328 6.58080 6.72862 6.93644 7.06370 7.29266 7.46866 7.59481 7.79804 8.01868 8.15804 8.39537 8.57980 8.69804 8.75670 10.10453 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025511 B = 0.006685 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.292087 B = 4187.489830 C = 5194.889068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.502 3.498 3 O -0.542 6.542 4 N -0.534 5.534 5 C 0.107 3.893 6 C -0.083 4.083 7 C -0.105 4.105 8 C -0.117 4.117 9 C 0.112 3.888 10 C -0.441 4.441 11 H 0.087 0.913 12 C 0.074 3.926 13 N -0.798 5.798 14 Si 0.913 3.087 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.263 1.263 18 C -0.115 4.115 19 Cl -0.110 7.110 20 C -0.079 4.079 21 C 0.006 3.994 22 H 0.089 0.911 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.131 0.869 30 H 0.283 0.717 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.875 -1.903 2.177 9.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.292 3.708 3 O -0.420 6.420 4 N -0.259 5.259 5 C -0.015 4.015 6 C -0.120 4.120 7 C -0.107 4.107 8 C -0.136 4.136 9 C 0.108 3.892 10 C -0.470 4.470 11 H 0.105 0.895 12 C -0.143 4.143 13 N -0.424 5.424 14 Si 0.737 3.263 15 H -0.188 1.188 16 H -0.203 1.203 17 H -0.188 1.188 18 C -0.143 4.143 19 Cl -0.081 7.081 20 C -0.100 4.100 21 C -0.086 4.086 22 H 0.108 0.892 23 H 0.109 0.891 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.149 0.851 30 H 0.094 0.906 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.562 -1.361 1.966 8.890 hybrid contribution 0.715 -0.295 -0.079 0.777 sum -7.848 -1.656 1.887 8.239 Atomic orbital electron populations 1.21845 0.91962 1.04359 1.04389 1.20510 0.90219 0.82493 0.77556 1.90665 1.70481 1.30760 1.50082 1.45368 1.05852 1.06092 1.68594 1.21976 0.96466 0.81924 1.01181 1.20985 0.91679 0.96762 1.02561 1.19536 0.94230 0.92014 1.04948 1.20303 0.88962 1.00147 1.04235 1.17350 0.94171 0.88259 0.89420 1.19538 0.92370 1.02514 1.32612 0.89531 1.25902 1.00047 0.96044 0.92307 1.69779 1.36395 1.10300 1.25890 0.86277 0.82064 0.78347 0.79626 1.18775 1.20304 1.18788 1.20232 0.87797 0.88662 1.17585 1.98212 1.59633 1.53198 1.97104 1.19896 0.90070 0.98237 1.01805 1.17552 0.81684 0.93906 1.15500 0.89211 0.89130 0.90503 0.91030 0.91001 0.90268 0.90079 0.85128 0.90633 0.86196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 9.93 36.01 0.36 -1.53 16 2 C 0.50 8.99 7.89 -10.98 -0.09 8.91 16 3 O -0.54 -12.02 15.22 5.56 0.08 -11.93 16 4 N -0.53 -9.92 3.11 -112.73 -0.35 -10.27 16 5 C 0.11 1.48 6.34 -3.67 -0.02 1.46 16 6 C -0.08 -1.31 6.94 -27.22 -0.19 -1.50 16 7 C -0.10 -2.27 6.17 -104.60 -0.65 -2.92 16 8 C -0.12 -2.83 8.60 -39.26 -0.34 -3.17 16 9 C 0.11 2.89 5.54 -106.78 -0.59 2.30 16 10 C -0.44 -11.31 8.45 -37.87 -0.32 -11.63 16 11 H 0.09 2.19 7.21 -52.49 -0.38 1.81 16 12 C 0.07 1.79 5.26 -17.33 -0.09 1.70 16 13 N -0.80 -19.52 10.86 55.55 0.60 -18.92 16 14 Si 0.91 18.23 29.57 -169.99 -5.03 13.21 16 15 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 16 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 17 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 18 C -0.11 -2.89 6.33 -39.25 -0.25 -3.13 16 19 Cl -0.11 -2.53 27.65 -51.86 -1.43 -3.96 16 20 C -0.08 -1.95 9.15 -39.56 -0.36 -2.31 16 21 C 0.01 0.14 6.64 -83.37 -0.55 -0.41 16 22 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.08 0.69 6.88 -51.93 -0.36 0.34 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.80 7.65 -51.93 -0.40 0.41 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.13 3.20 6.26 -52.49 -0.33 2.87 16 30 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 31 H 0.12 3.02 6.24 -52.49 -0.33 2.69 16 LS Contribution 278.22 15.07 4.19 4.19 Total: -1.00 -29.66 278.22 -8.06 -37.72 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -3.04 Total: 2.21 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -3.09 Total: -12.24 kcal Atomic # 7 Polarization: -29.45 SS G_CDS: 0.25 Total: -29.19 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.08 Total: -11.93 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.21 kcal Atomic # 17 Polarization: -2.53 SS G_CDS: -1.43 Total: -3.96 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.66 -8.06 -37.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216945707.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.275 kcal (2) G-P(sol) polarization free energy of solvation -29.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds